HEADER VIRAL PROTEIN 21-DEC-20 7DPU TITLE SARS-COV-2 3CL PROTEASE (3CLPRO) IN COMPLEX WITH 7-O-METHYL-MYRICETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO, 3CLP, MAIN PROTEASE, MPRO, NON-STRUCTURAL PROTEIN COMPND 5 5, NSP5, SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SARS-COV-2, 3CLPRO, INHIBITOR, COMPLEX, MYRICETIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.X.SU,W.F.ZHAO,H.XIE,M.J.LI,Y.C.XU REVDAT 4 09-OCT-24 7DPU 1 REMARK REVDAT 3 29-NOV-23 7DPU 1 REMARK REVDAT 2 21-JUL-21 7DPU 1 JRNL REVDAT 1 12-MAY-21 7DPU 0 JRNL AUTH H.SU,S.YAO,W.ZHAO,Y.ZHANG,J.LIU,Q.SHAO,Q.WANG,M.LI,H.XIE, JRNL AUTH 2 W.SHANG,C.KE,L.FENG,X.JIANG,J.SHEN,G.XIAO,H.JIANG,L.ZHANG, JRNL AUTH 3 Y.YE,Y.XU JRNL TITL IDENTIFICATION OF PYROGALLOL AS A WARHEAD IN DESIGN OF JRNL TITL 2 COVALENT INHIBITORS FOR THE SARS-COV-2 3CL PROTEASE. JRNL REF NAT COMMUN V. 12 3623 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34131140 JRNL DOI 10.1038/S41467-021-23751-3 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 52603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5700 - 4.5800 0.99 2943 138 0.1708 0.1813 REMARK 3 2 4.5800 - 3.6400 0.99 2863 138 0.1410 0.1629 REMARK 3 3 3.6300 - 3.1800 0.99 2829 159 0.1500 0.1796 REMARK 3 4 3.1800 - 2.8800 0.99 2838 146 0.1655 0.1838 REMARK 3 5 2.8800 - 2.6800 0.99 2833 125 0.1697 0.1824 REMARK 3 6 2.6800 - 2.5200 0.99 2854 142 0.1711 0.2219 REMARK 3 7 2.5200 - 2.3900 0.98 2777 141 0.1707 0.2234 REMARK 3 8 2.3900 - 2.2900 0.98 2828 137 0.1669 0.2397 REMARK 3 9 2.2900 - 2.2000 0.98 2757 156 0.1614 0.2065 REMARK 3 10 2.2000 - 2.1300 0.98 2781 154 0.1627 0.2065 REMARK 3 11 2.1300 - 2.0600 0.98 2761 153 0.1647 0.2165 REMARK 3 12 2.0600 - 2.0000 0.97 2749 127 0.1646 0.2078 REMARK 3 13 2.0000 - 1.9500 0.97 2764 157 0.1676 0.2022 REMARK 3 14 1.9500 - 1.9000 0.97 2748 159 0.1715 0.2274 REMARK 3 15 1.9000 - 1.8600 0.97 2731 140 0.1825 0.2371 REMARK 3 16 1.8600 - 1.8200 0.97 2746 147 0.1890 0.2263 REMARK 3 17 1.8200 - 1.7800 0.96 2742 132 0.2057 0.2424 REMARK 3 18 1.7800 - 1.7500 0.88 2473 135 0.2302 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8102 20.4778 37.7158 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.1376 REMARK 3 T33: 0.1223 T12: -0.0037 REMARK 3 T13: 0.0169 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.0912 L22: 1.6642 REMARK 3 L33: 2.3009 L12: -0.1040 REMARK 3 L13: 0.9719 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.1202 S12: 0.1183 S13: 0.1314 REMARK 3 S21: -0.0385 S22: 0.0319 S23: -0.1335 REMARK 3 S31: -0.2046 S32: 0.1750 S33: 0.0809 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5236 22.1872 49.6299 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.2637 REMARK 3 T33: 0.3291 T12: -0.0372 REMARK 3 T13: -0.0341 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.4753 L22: 3.8520 REMARK 3 L33: 3.7906 L12: -0.4859 REMARK 3 L13: 1.0578 L23: -1.3452 REMARK 3 S TENSOR REMARK 3 S11: -0.2359 S12: 0.1494 S13: 0.3730 REMARK 3 S21: 0.1847 S22: 0.0447 S23: -0.7678 REMARK 3 S31: -0.2834 S32: 0.5452 S33: 0.2020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0702 18.5646 40.6963 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1189 REMARK 3 T33: 0.1122 T12: -0.0035 REMARK 3 T13: 0.0137 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.9712 L22: 3.2020 REMARK 3 L33: 1.9828 L12: 0.1449 REMARK 3 L13: 0.8616 L23: 0.3832 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.0803 S13: 0.1128 REMARK 3 S21: -0.0222 S22: 0.0843 S23: -0.0930 REMARK 3 S31: -0.1892 S32: 0.1316 S33: -0.0206 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6845 6.1209 44.3039 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.1126 REMARK 3 T33: 0.1053 T12: 0.0146 REMARK 3 T13: 0.0201 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.4778 L22: 1.3026 REMARK 3 L33: 0.8991 L12: 1.1150 REMARK 3 L13: 0.8467 L23: 0.4098 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: 0.0377 S13: -0.1557 REMARK 3 S21: 0.1046 S22: -0.0184 S23: -0.1621 REMARK 3 S31: 0.0258 S32: 0.0965 S33: -0.0694 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4390 -7.1951 42.5194 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.1845 REMARK 3 T33: 0.2084 T12: -0.0254 REMARK 3 T13: -0.0052 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.4062 L22: 2.4302 REMARK 3 L33: 2.5165 L12: -0.4416 REMARK 3 L13: 0.0919 L23: 0.4245 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: -0.1209 S13: -0.3339 REMARK 3 S21: 0.0983 S22: 0.0369 S23: 0.1973 REMARK 3 S31: 0.3394 S32: -0.3002 S33: -0.0889 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9414 -5.0309 35.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1571 REMARK 3 T33: 0.1139 T12: 0.0051 REMARK 3 T13: -0.0070 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.9939 L22: 3.2109 REMARK 3 L33: 3.7327 L12: 0.2282 REMARK 3 L13: 0.2791 L23: 0.2168 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: 0.2668 S13: -0.1636 REMARK 3 S21: -0.2439 S22: -0.0577 S23: 0.0420 REMARK 3 S31: 0.2999 S32: -0.0174 S33: -0.0273 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2046 16.5964 31.3212 REMARK 3 T TENSOR REMARK 3 T11: 1.0594 T22: 0.6654 REMARK 3 T33: 1.0941 T12: 0.3712 REMARK 3 T13: 0.4308 T23: 0.1709 REMARK 3 L TENSOR REMARK 3 L11: 0.1837 L22: 0.8564 REMARK 3 L33: 0.0117 L12: 0.3966 REMARK 3 L13: -0.0464 L23: -0.1001 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.1244 S13: -0.0410 REMARK 3 S21: 0.0982 S22: -0.0398 S23: 0.0459 REMARK 3 S31: 0.0216 S32: -0.0856 S33: 0.1167 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6902 23.3150 13.2007 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1096 REMARK 3 T33: 0.0996 T12: 0.0199 REMARK 3 T13: 0.0236 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.1651 L22: 2.1509 REMARK 3 L33: 1.4734 L12: -0.6020 REMARK 3 L13: 0.5271 L23: -0.5296 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0478 S13: 0.0855 REMARK 3 S21: 0.0127 S22: 0.0305 S23: 0.1909 REMARK 3 S31: -0.1270 S32: -0.1579 S33: 0.0127 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7858 12.2807 17.0556 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.1260 REMARK 3 T33: 0.1189 T12: 0.0188 REMARK 3 T13: -0.0025 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.3903 L22: 3.8774 REMARK 3 L33: 2.2951 L12: -0.4858 REMARK 3 L13: 0.8840 L23: -0.1456 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: -0.0085 S13: -0.0771 REMARK 3 S21: 0.0249 S22: 0.0156 S23: -0.0556 REMARK 3 S31: 0.0770 S32: 0.0433 S33: 0.0029 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9162 5.1195 12.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.1494 REMARK 3 T33: 0.1238 T12: 0.0117 REMARK 3 T13: 0.0134 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.1057 L22: 1.4189 REMARK 3 L33: 0.8018 L12: -1.1754 REMARK 3 L13: 0.7947 L23: -0.4912 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: -0.0021 S13: -0.1967 REMARK 3 S21: -0.1626 S22: -0.0149 S23: 0.1747 REMARK 3 S31: 0.0759 S32: -0.0046 S33: -0.0980 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8906 -7.5360 17.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1578 REMARK 3 T33: 0.1256 T12: 0.0532 REMARK 3 T13: 0.0214 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.5255 L22: 1.9756 REMARK 3 L33: 2.0319 L12: 0.6291 REMARK 3 L13: 0.1718 L23: -0.4851 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.0002 S13: -0.1761 REMARK 3 S21: -0.0303 S22: -0.0319 S23: -0.0146 REMARK 3 S31: 0.2343 S32: 0.2109 S33: 0.0015 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4509 19.3115 24.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.3901 T22: 0.3415 REMARK 3 T33: 0.3255 T12: -0.0656 REMARK 3 T13: 0.0109 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.0009 L22: 5.1580 REMARK 3 L33: 9.5310 L12: 4.1182 REMARK 3 L13: 2.5556 L23: -4.8092 REMARK 3 S TENSOR REMARK 3 S11: -0.5204 S12: 0.1106 S13: 0.1888 REMARK 3 S21: -0.1322 S22: -0.2637 S23: -0.0874 REMARK 3 S31: -0.6669 S32: -0.2543 S33: 0.7734 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.07100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH6, 20% PEG6000, 3% DMSO, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.89900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 MET A 235 CG SD CE REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 TYR B 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 MET B 235 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -131.88 50.50 REMARK 500 ASN A 51 70.92 -155.93 REMARK 500 ASN A 84 -120.48 52.01 REMARK 500 TYR A 154 -99.03 58.01 REMARK 500 ASP B 33 -130.19 52.20 REMARK 500 HIS B 41 3.28 -69.86 REMARK 500 ASN B 51 77.34 -157.36 REMARK 500 ASN B 84 -120.07 52.31 REMARK 500 TYR B 154 -86.37 53.89 REMARK 500 ARG B 217 -3.12 -150.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DPU A 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 DBREF 7DPU B 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET HER A 401 24 HET HER B 401 24 HET GOL B 402 6 HETNAM HER 7-METHOXY-3,5-BIS(OXIDANYL)-2-[3,4,5-TRIS(OXIDANYL) HETNAM 2 HER PHENYL]CHROMEN-4-ONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HER 2(C16 H12 O8) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *410(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 THR A 45 MET A 49 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 SER A 62 HIS A 64 5 3 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 GLY A 302 1 11 HELIX 12 AB3 SER B 10 GLY B 15 1 6 HELIX 13 AB4 HIS B 41 CYS B 44 5 4 HELIX 14 AB5 THR B 45 MET B 49 5 5 HELIX 15 AB6 ASN B 53 ARG B 60 1 8 HELIX 16 AB7 SER B 62 HIS B 64 5 3 HELIX 17 AB8 ILE B 200 ASN B 214 1 15 HELIX 18 AB9 THR B 226 TYR B 237 1 12 HELIX 19 AC1 THR B 243 LEU B 250 1 8 HELIX 20 AC2 LEU B 250 GLY B 258 1 9 HELIX 21 AC3 ALA B 260 GLY B 275 1 16 HELIX 22 AC4 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK SG CYS A 145 C5 HER A 401 1555 1555 1.77 LINK SG CYS B 145 C5 HER B 401 1555 1555 1.77 CRYST1 44.258 53.798 115.062 90.00 100.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022595 0.000000 0.004376 0.00000 SCALE2 0.000000 0.018588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008852 0.00000