data_7DQ0 # _entry.id 7DQ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DQ0 pdb_00007dq0 10.2210/pdb7dq0/pdb WWPDB D_1300019902 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DQ0 _pdbx_database_status.recvd_initial_deposition_date 2020-12-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Satange, R.B.' 1 ? 'Hou, M.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Synergistic binding of actinomycin D and echinomycin to DNA mismatch sites and their combined anti-tumour effects.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkad156 _citation.pdbx_database_id_PubMed 36919604 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Satange, R.' 1 0000-0002-5150-9363 primary 'Chang, C.C.' 2 ? primary 'Li, L.Y.' 3 ? primary 'Lin, S.H.' 4 ? primary 'Neidle, S.' 5 0000-0003-0622-6548 primary 'Hou, M.H.' 6 0000-0003-4170-1527 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7DQ0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.188 _cell.length_a_esd ? _cell.length_b 30.188 _cell.length_b_esd ? _cell.length_c 137.608 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*GP*CP*TP*CP*GP*T)-3') ; 2113.410 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*GP*CP*TP*CP*GP*T)-3') ; 2113.410 1 ? ? ? ? 3 polymer nat 'Actinomycin D' 1259.447 1 ? ? ? ? 4 polymer nat Echinomycin 809.008 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 7 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 2 ? ? ? ? 8 water nat water 18.015 25 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DT)(DC)(DG)(DT)' AGCTCGT A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DT)(DG)(DC)(DT)' ACGTGCT B ? 3 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV C ? 4 'polypeptide(L)' no yes '(DSN)A(N2C)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DT n 3 1 THR n 3 2 DVA n 3 3 PRO n 3 4 SAR n 3 5 MVA n 3 6 PXZ n 3 7 THR n 3 8 DVA n 3 9 PRO n 3 10 SAR n 3 11 MVA n 4 1 DSN n 4 2 ALA n 4 3 N2C n 4 4 MVA n 4 5 DSN n 4 6 ALA n 4 7 NCY n 4 8 MVA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 3 1 sample 1 11 ? 'Streptomyces sp.' 1931 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 1 8 ? 'Streptomyces sp.' 1931 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 7 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7DQ0 7DQ0 ? 1 ? 1 2 PDB 7DQ0 7DQ0 ? 2 ? 1 3 NOR 7DQ0 NOR00228 ? 3 ? 1 4 NOR 7DQ0 NOR01126 ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7DQ0 A 1 ? 7 ? 7DQ0 1 ? 7 ? 1 7 2 2 7DQ0 B 1 ? 7 ? 7DQ0 1 ? 7 ? 1 7 3 3 7DQ0 C 1 ? 11 ? 7DQ0 1 ? 11 ? 1 11 4 4 7DQ0 D 1 ? 8 ? 7DQ0 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 N2C 'L-peptide linking' . N,S-DIMETHYLCYSTEINE ? 'C5 H11 N O2 S' 149.211 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O4' 296.277 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DQ0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.38 _exptl_crystal.description 'The entry contains friedel pairs in F_plus/minus columns and I_plus/minus columns' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;2.5 mM Sodium Cacodylate, 1 mM Magnesium chloride, 1 mM Spermine tetrahydrochloride, 1.5 mM Zinc Chloride, 1% PEG 200 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-19 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7DQ0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7257 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.700 _reflns.pdbx_Rmerge_I_obs 0.033 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.831 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.035 _reflns.pdbx_Rpim_I_all 0.012 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.000 2.070 ? ? ? ? ? ? 445 98.500 ? ? ? ? 0.230 ? ? ? ? ? ? ? ? 8.300 ? 0.767 ? ? 0.244 0.081 ? 1 1 0.996 ? ? 2.070 2.150 ? ? ? ? ? ? 481 99.600 ? ? ? ? 0.222 ? ? ? ? ? ? ? ? 9.900 ? 0.733 ? ? 0.235 0.074 ? 2 1 0.998 ? ? 2.150 2.250 ? ? ? ? ? ? 458 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 11.300 ? 0.762 ? ? 0.194 0.058 ? 3 1 0.999 ? ? 2.250 2.370 ? ? ? ? ? ? 467 99.800 ? ? ? ? 0.157 ? ? ? ? ? ? ? ? 11.700 ? 0.778 ? ? 0.165 0.049 ? 4 1 0.998 ? ? 2.370 2.520 ? ? ? ? ? ? 487 99.800 ? ? ? ? 0.111 ? ? ? ? ? ? ? ? 11.500 ? 0.845 ? ? 0.117 0.035 ? 5 1 0.998 ? ? 2.520 2.710 ? ? ? ? ? ? 472 99.800 ? ? ? ? 0.081 ? ? ? ? ? ? ? ? 11.100 ? 0.850 ? ? 0.085 0.026 ? 6 1 0.998 ? ? 2.710 2.990 ? ? ? ? ? ? 474 99.600 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 10.600 ? 0.773 ? ? 0.049 0.015 ? 7 1 1.000 ? ? 2.990 3.420 ? ? ? ? ? ? 487 97.000 ? ? ? ? 0.027 ? ? ? ? ? ? ? ? 9.100 ? 0.902 ? ? 0.029 0.011 ? 8 1 0.999 ? ? 3.420 4.310 ? ? ? ? ? ? 506 97.900 ? ? ? ? 0.021 ? ? ? ? ? ? ? ? 7.900 ? 0.977 ? ? 0.023 0.008 ? 9 1 1.000 ? ? 4.310 30.000 ? ? ? ? ? ? 553 96.300 ? ? ? ? 0.016 ? ? ? ? ? ? ? ? 6.300 ? 1.015 ? ? 0.017 0.007 ? 10 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 98.570 _refine.B_iso_mean 28.3076 _refine.B_iso_min 11.960 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'The entry contains friedel pairs in F_plus/minus columns and I_plus/minus columns' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DQ0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 25.2200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7257 _refine.ls_number_reflns_R_free 716 _refine.ls_number_reflns_R_work 6541 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 88.0100 _refine.ls_percent_reflns_R_free 9.8700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2333 _refine.ls_R_factor_R_free 0.2494 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2316 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model '5YTZ, 1MNV' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.6600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 25.2200 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 482 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 34 _refine_hist.pdbx_B_iso_mean_ligand 26.68 _refine_hist.pdbx_B_iso_mean_solvent 26.61 _refine_hist.pdbx_number_atoms_protein 155 _refine_hist.pdbx_number_atoms_nucleic_acid 286 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0000 2.1500 984 . 98 886 59.0000 . . . 0.2730 0.0000 0.2844 . . . . . . . 5 . . . 'X-RAY DIFFRACTION' 2.1500 2.3700 1385 . 134 1251 85.0000 . . . 0.2876 0.0000 0.2659 . . . . . . . 5 . . . 'X-RAY DIFFRACTION' 2.3700 2.7100 1653 . 164 1489 100.0000 . . . 0.3098 0.0000 0.2662 . . . . . . . 5 . . . 'X-RAY DIFFRACTION' 2.7100 3.4100 1621 . 161 1460 99.0000 . . . 0.2507 0.0000 0.2436 . . . . . . . 5 . . . 'X-RAY DIFFRACTION' 3.4100 25.2200 1614 . 159 1455 98.0000 . . . 0.2085 0.0000 0.1922 . . . . . . . 5 . . . # _struct.entry_id 7DQ0 _struct.title 'Crystal structure of actinomycin D-echinomycin-d(ACGTGCT/AGCTCGT) complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DQ0 _struct_keywords.text 'Drug-DNA complex, DNA mismatch, DNA unwinding, DNA deformation, DNA, ANTIBIOTIC-DNA complex' _struct_keywords.pdbx_keywords ANTIBIOTIC/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 5 ? I N N 7 ? J N N 7 ? K N N 8 ? L N N 8 ? M N N 8 ? N N N 8 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? D N2C 3 SG ? ? ? 1_555 D NCY 7 SG ? ? D N2C 3 D NCY 7 1_555 ? ? ? ? ? ? ? 2.607 ? ? covale1 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? C THR 1 C DVA 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? C THR 1 C MVA 5 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale3 covale one ? C THR 1 N ? ? ? 1_555 C PXZ 6 "C0'" ? ? C THR 1 C PXZ 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale4 covale both ? C DVA 2 C ? ? ? 1_555 C PRO 3 N ? ? C DVA 2 C PRO 3 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale5 covale both ? C PRO 3 C ? ? ? 1_555 C SAR 4 N ? ? C PRO 3 C SAR 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? C SAR 4 C MVA 5 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale one ? C PXZ 6 C0 ? ? ? 1_555 C THR 7 N ? ? C PXZ 6 C THR 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale8 covale both ? C THR 7 C ? ? ? 1_555 C DVA 8 N ? ? C THR 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale9 covale one ? C THR 7 OG1 ? ? ? 1_555 C MVA 11 C ? ? C THR 7 C MVA 11 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale10 covale both ? C DVA 8 C ? ? ? 1_555 C PRO 9 N ? ? C DVA 8 C PRO 9 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale11 covale both ? C PRO 9 C ? ? ? 1_555 C SAR 10 N ? ? C PRO 9 C SAR 10 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? C SAR 10 C ? ? ? 1_555 C MVA 11 N ? ? C SAR 10 C MVA 11 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? D DSN 1 C ? ? ? 1_555 D ALA 2 N ? ? D DSN 1 D ALA 2 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale14 covale one ? D DSN 1 OG ? ? ? 1_555 D MVA 8 C ? ? D DSN 1 D MVA 8 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale15 covale both ? D DSN 1 N ? ? ? 1_555 J QUI . C ? ? D DSN 1 D QUI 102 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale16 covale both ? D ALA 2 C ? ? ? 1_555 D N2C 3 N ? ? D ALA 2 D N2C 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale17 covale both ? D N2C 3 C ? ? ? 1_555 D MVA 4 N ? ? D N2C 3 D MVA 4 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale18 covale both ? D N2C 3 CB ? ? ? 1_555 D NCY 7 SG ? ? D N2C 3 D NCY 7 1_555 ? ? ? ? ? ? ? 1.769 ? ? covale19 covale one ? D MVA 4 C ? ? ? 1_555 D DSN 5 OG ? ? D MVA 4 D DSN 5 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale20 covale both ? D DSN 5 C ? ? ? 1_555 D ALA 6 N ? ? D DSN 5 D ALA 6 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale21 covale both ? D DSN 5 N ? ? ? 1_555 I QUI . C ? ? D DSN 5 D QUI 101 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale22 covale both ? D ALA 6 C ? ? ? 1_555 D NCY 7 N ? ? D ALA 6 D NCY 7 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale23 covale both ? D NCY 7 C ? ? ? 1_555 D MVA 8 N ? ? D NCY 7 D MVA 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? metalc1 metalc ? ? A DA 1 N7 ? ? ? 1_555 E ZN . ZN ? ? A DA 1 A ZN 101 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc2 metalc ? ? A DT 4 OP2 ? ? ? 1_555 F ZN . ZN ? ? A DT 4 A ZN 102 7_555 ? ? ? ? ? ? ? 1.945 ? ? metalc3 metalc ? ? A DG 6 N7 ? ? ? 1_555 F ZN . ZN ? ? A DG 6 A ZN 102 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 K HOH . O ? ? A ZN 101 A HOH 205 1_555 ? ? ? ? ? ? ? 1.722 ? ? metalc5 metalc ? ? E ZN . ZN ? ? ? 1_555 K HOH . O ? ? A ZN 101 A HOH 213 3_545 ? ? ? ? ? ? ? 1.892 ? ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 K HOH . O ? ? A ZN 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 K HOH . O ? ? A ZN 102 A HOH 209 7_555 ? ? ? ? ? ? ? 2.479 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DT 4 N3 ? ? A DC 3 B DT 4 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DT 4 O4 ? ? A DC 3 B DT 4 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog8 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DT 4 O2 ? ? A DT 4 B DT 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DT 4 N3 ? ? A DT 4 B DT 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 C . ? DVA 2 C PRO 3 C ? PRO 3 C 1 10.60 2 PRO 3 C . ? PRO 3 C SAR 4 C ? SAR 4 C 1 -3.44 3 DVA 8 C . ? DVA 8 C PRO 9 C ? PRO 9 C 1 11.27 4 PRO 9 C . ? PRO 9 C SAR 10 C ? SAR 10 C 1 -3.67 # _atom_sites.entry_id 7DQ0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.033126 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033126 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007267 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DT 7 7 7 DT DT B . n C 3 1 THR 1 1 1 THR THR C . n C 3 2 DVA 2 2 2 DVA DVA C . n C 3 3 PRO 3 3 3 PRO PRO C . n C 3 4 SAR 4 4 4 SAR SAR C . n C 3 5 MVA 5 5 5 MVA MVA C . n C 3 6 PXZ 6 6 6 PXZ PXF C . n C 3 7 THR 7 7 7 THR THR C . n C 3 8 DVA 8 8 8 DVA DVA C . n C 3 9 PRO 9 9 9 PRO PRO C . n C 3 10 SAR 10 10 10 SAR SAR C . n C 3 11 MVA 11 11 11 MVA MVA C . n D 4 1 DSN 1 1 1 DSN DSN D . n D 4 2 ALA 2 2 2 ALA ALA D . n D 4 3 N2C 3 3 3 N2C N2C D . n D 4 4 MVA 4 4 4 MVA MVA D . n D 4 5 DSN 5 5 5 DSN DSN D . n D 4 6 ALA 6 6 6 ALA ALA D . n D 4 7 NCY 7 7 7 NCY NCY D . n D 4 8 MVA 8 8 8 MVA MVA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN 1 101 5 ZN ZN A . F 5 ZN 1 102 6 ZN ZN A . G 6 CL 1 103 1 CL CL A . H 5 ZN 1 101 1 ZN ZN B . I 7 QUI 1 101 102 QUI QUI D . J 7 QUI 1 102 101 QUI QUI D . K 8 HOH 1 201 21 HOH HOH A . K 8 HOH 2 202 78 HOH HOH A . K 8 HOH 3 203 91 HOH HOH A . K 8 HOH 4 204 87 HOH HOH A . K 8 HOH 5 205 97 HOH HOH A . K 8 HOH 6 206 86 HOH HOH A . K 8 HOH 7 207 9 HOH HOH A . K 8 HOH 8 208 95 HOH HOH A . K 8 HOH 9 209 93 HOH HOH A . K 8 HOH 10 210 17 HOH HOH A . K 8 HOH 11 211 36 HOH HOH A . K 8 HOH 12 212 5 HOH HOH A . K 8 HOH 13 213 96 HOH HOH A . K 8 HOH 14 214 59 HOH HOH A . K 8 HOH 15 215 52 HOH HOH A . K 8 HOH 16 216 45 HOH HOH A . L 8 HOH 1 201 94 HOH HOH B . L 8 HOH 2 202 82 HOH HOH B . L 8 HOH 3 203 7 HOH HOH B . L 8 HOH 4 204 81 HOH HOH B . L 8 HOH 5 205 89 HOH HOH B . L 8 HOH 6 206 49 HOH HOH B . L 8 HOH 7 207 27 HOH HOH B . M 8 HOH 1 101 44 HOH HOH C . N 8 HOH 1 201 15 HOH HOH D . # loop_ _pdbx_molecule_features.prd_id _pdbx_molecule_features.name _pdbx_molecule_features.type _pdbx_molecule_features.class _pdbx_molecule_features.details PRD_000001 'Actinomycin D' Polypeptide Antibiotic ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; PRD_000491 Echinomycin 'Cyclic depsipeptide' Antibiotic ;ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000491 D 1 PRD_000491 I 1 PRD_000491 J 2 PRD_000001 C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4870 ? 1 MORE -72 ? 1 'SSA (A^2)' 2790 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id ZN _pdbx_struct_special_symmetry.auth_seq_id 101 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id ZN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 78.8 ? 2 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 O ? K HOH . ? A HOH 213 ? 3_545 104.1 ? 3 O ? K HOH . ? A HOH 205 ? 1_555 ZN ? E ZN . ? A ZN 101 ? 1_555 O ? K HOH . ? A HOH 213 ? 3_545 162.2 ? 4 OP2 ? A DT 4 ? A DT 4 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 7_555 N7 ? A DG 6 ? A DG 6 ? 1_555 133.2 ? 5 OP2 ? A DT 4 ? A DT 4 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 7_555 O ? K HOH . ? A HOH 203 ? 1_555 145.0 ? 6 N7 ? A DG 6 ? A DG 6 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 7_555 O ? K HOH . ? A HOH 203 ? 1_555 11.8 ? 7 OP2 ? A DT 4 ? A DT 4 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 7_555 O ? K HOH . ? A HOH 209 ? 7_555 128.7 ? 8 N7 ? A DG 6 ? A DG 6 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 7_555 O ? K HOH . ? A HOH 209 ? 7_555 13.8 ? 9 O ? K HOH . ? A HOH 203 ? 1_555 ZN ? F ZN . ? A ZN 102 ? 7_555 O ? K HOH . ? A HOH 209 ? 7_555 19.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-12-29 2 'Structure model' 1 1 2023-03-29 3 'Structure model' 2 0 2023-11-15 4 'Structure model' 2 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_site 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' struct_conn 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_atom_site.auth_atom_id' 11 3 'Structure model' '_atom_site.label_atom_id' 12 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 5 # _pdbx_entry_details.entry_id 7DQ0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) THE ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, ECHINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) QUI. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 C THR 7 ? ? O C MVA 11 ? ? 1.90 2 1 CA D DSN 5 ? ? C D QUI 101 ? ? 2.09 3 1 OG1 C THR 1 ? ? CA C MVA 5 ? ? 2.16 4 1 OG1 C THR 1 ? ? O C MVA 5 ? ? 2.19 5 1 OG D DSN 1 ? ? O D MVA 8 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.42 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.12 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 CL CL CL N N 14 DA OP3 O N N 15 DA P P N N 16 DA OP1 O N N 17 DA OP2 O N N 18 DA "O5'" O N N 19 DA "C5'" C N N 20 DA "C4'" C N R 21 DA "O4'" O N N 22 DA "C3'" C N S 23 DA "O3'" O N N 24 DA "C2'" C N N 25 DA "C1'" C N R 26 DA N9 N Y N 27 DA C8 C Y N 28 DA N7 N Y N 29 DA C5 C Y N 30 DA C6 C Y N 31 DA N6 N N N 32 DA N1 N Y N 33 DA C2 C Y N 34 DA N3 N Y N 35 DA C4 C Y N 36 DA HOP3 H N N 37 DA HOP2 H N N 38 DA "H5'" H N N 39 DA "H5''" H N N 40 DA "H4'" H N N 41 DA "H3'" H N N 42 DA "HO3'" H N N 43 DA "H2'" H N N 44 DA "H2''" H N N 45 DA "H1'" H N N 46 DA H8 H N N 47 DA H61 H N N 48 DA H62 H N N 49 DA H2 H N N 50 DC OP3 O N N 51 DC P P N N 52 DC OP1 O N N 53 DC OP2 O N N 54 DC "O5'" O N N 55 DC "C5'" C N N 56 DC "C4'" C N R 57 DC "O4'" O N N 58 DC "C3'" C N S 59 DC "O3'" O N N 60 DC "C2'" C N N 61 DC "C1'" C N R 62 DC N1 N N N 63 DC C2 C N N 64 DC O2 O N N 65 DC N3 N N N 66 DC C4 C N N 67 DC N4 N N N 68 DC C5 C N N 69 DC C6 C N N 70 DC HOP3 H N N 71 DC HOP2 H N N 72 DC "H5'" H N N 73 DC "H5''" H N N 74 DC "H4'" H N N 75 DC "H3'" H N N 76 DC "HO3'" H N N 77 DC "H2'" H N N 78 DC "H2''" H N N 79 DC "H1'" H N N 80 DC H41 H N N 81 DC H42 H N N 82 DC H5 H N N 83 DC H6 H N N 84 DG OP3 O N N 85 DG P P N N 86 DG OP1 O N N 87 DG OP2 O N N 88 DG "O5'" O N N 89 DG "C5'" C N N 90 DG "C4'" C N R 91 DG "O4'" O N N 92 DG "C3'" C N S 93 DG "O3'" O N N 94 DG "C2'" C N N 95 DG "C1'" C N R 96 DG N9 N Y N 97 DG C8 C Y N 98 DG N7 N Y N 99 DG C5 C Y N 100 DG C6 C N N 101 DG O6 O N N 102 DG N1 N N N 103 DG C2 C N N 104 DG N2 N N N 105 DG N3 N N N 106 DG C4 C Y N 107 DG HOP3 H N N 108 DG HOP2 H N N 109 DG "H5'" H N N 110 DG "H5''" H N N 111 DG "H4'" H N N 112 DG "H3'" H N N 113 DG "HO3'" H N N 114 DG "H2'" H N N 115 DG "H2''" H N N 116 DG "H1'" H N N 117 DG H8 H N N 118 DG H1 H N N 119 DG H21 H N N 120 DG H22 H N N 121 DSN N N N N 122 DSN CA C N R 123 DSN C C N N 124 DSN O O N N 125 DSN OXT O N N 126 DSN CB C N N 127 DSN OG O N N 128 DSN H H N N 129 DSN H2 H N N 130 DSN HA H N N 131 DSN HXT H N N 132 DSN HB2 H N N 133 DSN HB3 H N N 134 DSN HG H N N 135 DT OP3 O N N 136 DT P P N N 137 DT OP1 O N N 138 DT OP2 O N N 139 DT "O5'" O N N 140 DT "C5'" C N N 141 DT "C4'" C N R 142 DT "O4'" O N N 143 DT "C3'" C N S 144 DT "O3'" O N N 145 DT "C2'" C N N 146 DT "C1'" C N R 147 DT N1 N N N 148 DT C2 C N N 149 DT O2 O N N 150 DT N3 N N N 151 DT C4 C N N 152 DT O4 O N N 153 DT C5 C N N 154 DT C7 C N N 155 DT C6 C N N 156 DT HOP3 H N N 157 DT HOP2 H N N 158 DT "H5'" H N N 159 DT "H5''" H N N 160 DT "H4'" H N N 161 DT "H3'" H N N 162 DT "HO3'" H N N 163 DT "H2'" H N N 164 DT "H2''" H N N 165 DT "H1'" H N N 166 DT H3 H N N 167 DT H71 H N N 168 DT H72 H N N 169 DT H73 H N N 170 DT H6 H N N 171 DVA N N N N 172 DVA CA C N R 173 DVA CB C N N 174 DVA CG1 C N N 175 DVA CG2 C N N 176 DVA C C N N 177 DVA O O N N 178 DVA OXT O N N 179 DVA H H N N 180 DVA H2 H N N 181 DVA HA H N N 182 DVA HB H N N 183 DVA HG11 H N N 184 DVA HG12 H N N 185 DVA HG13 H N N 186 DVA HG21 H N N 187 DVA HG22 H N N 188 DVA HG23 H N N 189 DVA HXT H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 MVA N N N N 194 MVA CN C N N 195 MVA CA C N S 196 MVA CB C N N 197 MVA CG1 C N N 198 MVA CG2 C N N 199 MVA C C N N 200 MVA O O N N 201 MVA OXT O N N 202 MVA H H N N 203 MVA HN1 H N N 204 MVA HN2 H N N 205 MVA HN3 H N N 206 MVA HA H N N 207 MVA HB H N N 208 MVA HG11 H N N 209 MVA HG12 H N N 210 MVA HG13 H N N 211 MVA HG21 H N N 212 MVA HG22 H N N 213 MVA HG23 H N N 214 MVA HXT H N N 215 N2C N N N N 216 N2C CA C N R 217 N2C CB C N N 218 N2C SG S N N 219 N2C CD C N N 220 N2C CN C N N 221 N2C C C N N 222 N2C O O N N 223 N2C OXT O N N 224 N2C H H N N 225 N2C HA H N N 226 N2C HB2 H N N 227 N2C HB3 H N N 228 N2C HD1 H N N 229 N2C HD2 H N N 230 N2C HD3 H N N 231 N2C HN1 H N N 232 N2C HN2 H N N 233 N2C HN3 H N N 234 N2C HXT H N N 235 NCY N N N N 236 NCY CA C N R 237 NCY CB C N N 238 NCY SG S N N 239 NCY CN C N N 240 NCY C C N N 241 NCY O O N N 242 NCY OXT O N N 243 NCY H H N N 244 NCY HA H N N 245 NCY HB2 H N N 246 NCY HB3 H N N 247 NCY HG H N N 248 NCY HCN1 H N N 249 NCY HCN2 H N N 250 NCY HCN3 H N N 251 NCY HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 PXZ C1 C Y N 270 PXZ C0 C N N 271 PXZ O1 O N N 272 PXZ C2 C Y N 273 PXZ N2 N N N 274 PXZ C3 C Y N 275 PXZ O3 O N N 276 PXZ C4 C Y N 277 PXZ O5 O Y N 278 PXZ C6 C Y N 279 PXZ C7 C Y N 280 PXZ C8 C Y N 281 PXZ C9 C Y N 282 PXZ "C0'" C N N 283 PXZ "O1'" O N N 284 PXZ N10 N Y N 285 PXZ C11 C Y N 286 PXZ C12 C Y N 287 PXZ C13 C Y N 288 PXZ C14 C Y N 289 PXZ C15 C N N 290 PXZ C16 C N N 291 PXZ H1 H N N 292 PXZ HN21 H N N 293 PXZ HN22 H N N 294 PXZ H7 H N N 295 PXZ H8 H N N 296 PXZ "H1'" H N N 297 PXZ H151 H N N 298 PXZ H152 H N N 299 PXZ H153 H N N 300 PXZ H161 H N N 301 PXZ H162 H N N 302 PXZ H163 H N N 303 QUI N1 N Y N 304 QUI C2 C Y N 305 QUI C3 C Y N 306 QUI N4 N Y N 307 QUI C5 C Y N 308 QUI C6 C Y N 309 QUI C7 C Y N 310 QUI C8 C Y N 311 QUI C9 C Y N 312 QUI C10 C Y N 313 QUI C C N N 314 QUI O1 O N N 315 QUI O2 O N N 316 QUI H3 H N N 317 QUI H5 H N N 318 QUI H6 H N N 319 QUI H7 H N N 320 QUI H8 H N N 321 QUI HO2 H N N 322 SAR N N N N 323 SAR CA C N N 324 SAR C C N N 325 SAR O O N N 326 SAR CN C N N 327 SAR OXT O N N 328 SAR H H N N 329 SAR HA2 H N N 330 SAR HA3 H N N 331 SAR HN1 H N N 332 SAR HN2 H N N 333 SAR HN3 H N N 334 SAR HXT H N N 335 THR N N N N 336 THR CA C N S 337 THR C C N N 338 THR O O N N 339 THR CB C N R 340 THR OG1 O N N 341 THR CG2 C N N 342 THR OXT O N N 343 THR H H N N 344 THR H2 H N N 345 THR HA H N N 346 THR HB H N N 347 THR HG1 H N N 348 THR HG21 H N N 349 THR HG22 H N N 350 THR HG23 H N N 351 THR HXT H N N 352 ZN ZN ZN N N 353 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DA OP3 P sing N N 13 DA OP3 HOP3 sing N N 14 DA P OP1 doub N N 15 DA P OP2 sing N N 16 DA P "O5'" sing N N 17 DA OP2 HOP2 sing N N 18 DA "O5'" "C5'" sing N N 19 DA "C5'" "C4'" sing N N 20 DA "C5'" "H5'" sing N N 21 DA "C5'" "H5''" sing N N 22 DA "C4'" "O4'" sing N N 23 DA "C4'" "C3'" sing N N 24 DA "C4'" "H4'" sing N N 25 DA "O4'" "C1'" sing N N 26 DA "C3'" "O3'" sing N N 27 DA "C3'" "C2'" sing N N 28 DA "C3'" "H3'" sing N N 29 DA "O3'" "HO3'" sing N N 30 DA "C2'" "C1'" sing N N 31 DA "C2'" "H2'" sing N N 32 DA "C2'" "H2''" sing N N 33 DA "C1'" N9 sing N N 34 DA "C1'" "H1'" sing N N 35 DA N9 C8 sing Y N 36 DA N9 C4 sing Y N 37 DA C8 N7 doub Y N 38 DA C8 H8 sing N N 39 DA N7 C5 sing Y N 40 DA C5 C6 sing Y N 41 DA C5 C4 doub Y N 42 DA C6 N6 sing N N 43 DA C6 N1 doub Y N 44 DA N6 H61 sing N N 45 DA N6 H62 sing N N 46 DA N1 C2 sing Y N 47 DA C2 N3 doub Y N 48 DA C2 H2 sing N N 49 DA N3 C4 sing Y N 50 DC OP3 P sing N N 51 DC OP3 HOP3 sing N N 52 DC P OP1 doub N N 53 DC P OP2 sing N N 54 DC P "O5'" sing N N 55 DC OP2 HOP2 sing N N 56 DC "O5'" "C5'" sing N N 57 DC "C5'" "C4'" sing N N 58 DC "C5'" "H5'" sing N N 59 DC "C5'" "H5''" sing N N 60 DC "C4'" "O4'" sing N N 61 DC "C4'" "C3'" sing N N 62 DC "C4'" "H4'" sing N N 63 DC "O4'" "C1'" sing N N 64 DC "C3'" "O3'" sing N N 65 DC "C3'" "C2'" sing N N 66 DC "C3'" "H3'" sing N N 67 DC "O3'" "HO3'" sing N N 68 DC "C2'" "C1'" sing N N 69 DC "C2'" "H2'" sing N N 70 DC "C2'" "H2''" sing N N 71 DC "C1'" N1 sing N N 72 DC "C1'" "H1'" sing N N 73 DC N1 C2 sing N N 74 DC N1 C6 sing N N 75 DC C2 O2 doub N N 76 DC C2 N3 sing N N 77 DC N3 C4 doub N N 78 DC C4 N4 sing N N 79 DC C4 C5 sing N N 80 DC N4 H41 sing N N 81 DC N4 H42 sing N N 82 DC C5 C6 doub N N 83 DC C5 H5 sing N N 84 DC C6 H6 sing N N 85 DG OP3 P sing N N 86 DG OP3 HOP3 sing N N 87 DG P OP1 doub N N 88 DG P OP2 sing N N 89 DG P "O5'" sing N N 90 DG OP2 HOP2 sing N N 91 DG "O5'" "C5'" sing N N 92 DG "C5'" "C4'" sing N N 93 DG "C5'" "H5'" sing N N 94 DG "C5'" "H5''" sing N N 95 DG "C4'" "O4'" sing N N 96 DG "C4'" "C3'" sing N N 97 DG "C4'" "H4'" sing N N 98 DG "O4'" "C1'" sing N N 99 DG "C3'" "O3'" sing N N 100 DG "C3'" "C2'" sing N N 101 DG "C3'" "H3'" sing N N 102 DG "O3'" "HO3'" sing N N 103 DG "C2'" "C1'" sing N N 104 DG "C2'" "H2'" sing N N 105 DG "C2'" "H2''" sing N N 106 DG "C1'" N9 sing N N 107 DG "C1'" "H1'" sing N N 108 DG N9 C8 sing Y N 109 DG N9 C4 sing Y N 110 DG C8 N7 doub Y N 111 DG C8 H8 sing N N 112 DG N7 C5 sing Y N 113 DG C5 C6 sing N N 114 DG C5 C4 doub Y N 115 DG C6 O6 doub N N 116 DG C6 N1 sing N N 117 DG N1 C2 sing N N 118 DG N1 H1 sing N N 119 DG C2 N2 sing N N 120 DG C2 N3 doub N N 121 DG N2 H21 sing N N 122 DG N2 H22 sing N N 123 DG N3 C4 sing N N 124 DSN N CA sing N N 125 DSN N H sing N N 126 DSN N H2 sing N N 127 DSN CA C sing N N 128 DSN CA CB sing N N 129 DSN CA HA sing N N 130 DSN C O doub N N 131 DSN C OXT sing N N 132 DSN OXT HXT sing N N 133 DSN CB OG sing N N 134 DSN CB HB2 sing N N 135 DSN CB HB3 sing N N 136 DSN OG HG sing N N 137 DT OP3 P sing N N 138 DT OP3 HOP3 sing N N 139 DT P OP1 doub N N 140 DT P OP2 sing N N 141 DT P "O5'" sing N N 142 DT OP2 HOP2 sing N N 143 DT "O5'" "C5'" sing N N 144 DT "C5'" "C4'" sing N N 145 DT "C5'" "H5'" sing N N 146 DT "C5'" "H5''" sing N N 147 DT "C4'" "O4'" sing N N 148 DT "C4'" "C3'" sing N N 149 DT "C4'" "H4'" sing N N 150 DT "O4'" "C1'" sing N N 151 DT "C3'" "O3'" sing N N 152 DT "C3'" "C2'" sing N N 153 DT "C3'" "H3'" sing N N 154 DT "O3'" "HO3'" sing N N 155 DT "C2'" "C1'" sing N N 156 DT "C2'" "H2'" sing N N 157 DT "C2'" "H2''" sing N N 158 DT "C1'" N1 sing N N 159 DT "C1'" "H1'" sing N N 160 DT N1 C2 sing N N 161 DT N1 C6 sing N N 162 DT C2 O2 doub N N 163 DT C2 N3 sing N N 164 DT N3 C4 sing N N 165 DT N3 H3 sing N N 166 DT C4 O4 doub N N 167 DT C4 C5 sing N N 168 DT C5 C7 sing N N 169 DT C5 C6 doub N N 170 DT C7 H71 sing N N 171 DT C7 H72 sing N N 172 DT C7 H73 sing N N 173 DT C6 H6 sing N N 174 DVA N CA sing N N 175 DVA N H sing N N 176 DVA N H2 sing N N 177 DVA CA CB sing N N 178 DVA CA C sing N N 179 DVA CA HA sing N N 180 DVA CB CG1 sing N N 181 DVA CB CG2 sing N N 182 DVA CB HB sing N N 183 DVA CG1 HG11 sing N N 184 DVA CG1 HG12 sing N N 185 DVA CG1 HG13 sing N N 186 DVA CG2 HG21 sing N N 187 DVA CG2 HG22 sing N N 188 DVA CG2 HG23 sing N N 189 DVA C O doub N N 190 DVA C OXT sing N N 191 DVA OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 MVA N CN sing N N 195 MVA N CA sing N N 196 MVA N H sing N N 197 MVA CN HN1 sing N N 198 MVA CN HN2 sing N N 199 MVA CN HN3 sing N N 200 MVA CA CB sing N N 201 MVA CA C sing N N 202 MVA CA HA sing N N 203 MVA CB CG1 sing N N 204 MVA CB CG2 sing N N 205 MVA CB HB sing N N 206 MVA CG1 HG11 sing N N 207 MVA CG1 HG12 sing N N 208 MVA CG1 HG13 sing N N 209 MVA CG2 HG21 sing N N 210 MVA CG2 HG22 sing N N 211 MVA CG2 HG23 sing N N 212 MVA C O doub N N 213 MVA C OXT sing N N 214 MVA OXT HXT sing N N 215 N2C N CA sing N N 216 N2C N CN sing N N 217 N2C N H sing N N 218 N2C CA CB sing N N 219 N2C CA C sing N N 220 N2C CA HA sing N N 221 N2C CB SG sing N N 222 N2C CB HB2 sing N N 223 N2C CB HB3 sing N N 224 N2C SG CD sing N N 225 N2C CD HD1 sing N N 226 N2C CD HD2 sing N N 227 N2C CD HD3 sing N N 228 N2C CN HN1 sing N N 229 N2C CN HN2 sing N N 230 N2C CN HN3 sing N N 231 N2C C O doub N N 232 N2C C OXT sing N N 233 N2C OXT HXT sing N N 234 NCY N CA sing N N 235 NCY N CN sing N N 236 NCY N H sing N N 237 NCY CA CB sing N N 238 NCY CA C sing N N 239 NCY CA HA sing N N 240 NCY CB SG sing N N 241 NCY CB HB2 sing N N 242 NCY CB HB3 sing N N 243 NCY SG HG sing N N 244 NCY CN HCN1 sing N N 245 NCY CN HCN2 sing N N 246 NCY CN HCN3 sing N N 247 NCY C O doub N N 248 NCY C OXT sing N N 249 NCY OXT HXT sing N N 250 PRO N CA sing N N 251 PRO N CD sing N N 252 PRO N H sing N N 253 PRO CA C sing N N 254 PRO CA CB sing N N 255 PRO CA HA sing N N 256 PRO C O doub N N 257 PRO C OXT sing N N 258 PRO CB CG sing N N 259 PRO CB HB2 sing N N 260 PRO CB HB3 sing N N 261 PRO CG CD sing N N 262 PRO CG HG2 sing N N 263 PRO CG HG3 sing N N 264 PRO CD HD2 sing N N 265 PRO CD HD3 sing N N 266 PRO OXT HXT sing N N 267 PXZ C1 C0 sing N N 268 PXZ C1 C2 doub Y N 269 PXZ C1 C11 sing Y N 270 PXZ C0 O1 doub N N 271 PXZ C0 H1 sing N N 272 PXZ C2 N2 sing N N 273 PXZ C2 C3 sing Y N 274 PXZ N2 HN21 sing N N 275 PXZ N2 HN22 sing N N 276 PXZ C3 O3 doub N N 277 PXZ C3 C4 sing Y N 278 PXZ C4 C12 doub Y N 279 PXZ C4 C15 sing N N 280 PXZ O5 C12 sing Y N 281 PXZ O5 C13 sing Y N 282 PXZ C6 C7 doub Y N 283 PXZ C6 C13 sing Y N 284 PXZ C6 C16 sing N N 285 PXZ C7 C8 sing Y N 286 PXZ C7 H7 sing N N 287 PXZ C8 C9 doub Y N 288 PXZ C8 H8 sing N N 289 PXZ C9 "C0'" sing N N 290 PXZ C9 C14 sing Y N 291 PXZ "C0'" "O1'" doub N N 292 PXZ "C0'" "H1'" sing N N 293 PXZ N10 C11 doub Y N 294 PXZ N10 C14 sing Y N 295 PXZ C11 C12 sing Y N 296 PXZ C13 C14 doub Y N 297 PXZ C15 H151 sing N N 298 PXZ C15 H152 sing N N 299 PXZ C15 H153 sing N N 300 PXZ C16 H161 sing N N 301 PXZ C16 H162 sing N N 302 PXZ C16 H163 sing N N 303 QUI N1 C2 doub Y N 304 QUI N1 C9 sing Y N 305 QUI C2 C3 sing Y N 306 QUI C2 C sing N N 307 QUI C3 N4 doub Y N 308 QUI C3 H3 sing N N 309 QUI N4 C10 sing Y N 310 QUI C5 C6 doub Y N 311 QUI C5 C10 sing Y N 312 QUI C5 H5 sing N N 313 QUI C6 C7 sing Y N 314 QUI C6 H6 sing N N 315 QUI C7 C8 doub Y N 316 QUI C7 H7 sing N N 317 QUI C8 C9 sing Y N 318 QUI C8 H8 sing N N 319 QUI C9 C10 doub Y N 320 QUI C O1 doub N N 321 QUI C O2 sing N N 322 QUI O2 HO2 sing N N 323 SAR N CA sing N N 324 SAR N CN sing N N 325 SAR N H sing N N 326 SAR CA C sing N N 327 SAR CA HA2 sing N N 328 SAR CA HA3 sing N N 329 SAR C O doub N N 330 SAR C OXT sing N N 331 SAR CN HN1 sing N N 332 SAR CN HN2 sing N N 333 SAR CN HN3 sing N N 334 SAR OXT HXT sing N N 335 THR N CA sing N N 336 THR N H sing N N 337 THR N H2 sing N N 338 THR CA C sing N N 339 THR CA CB sing N N 340 THR CA HA sing N N 341 THR C O doub N N 342 THR C OXT sing N N 343 THR CB OG1 sing N N 344 THR CB CG2 sing N N 345 THR CB HB sing N N 346 THR OG1 HG1 sing N N 347 THR CG2 HG21 sing N N 348 THR CG2 HG22 sing N N 349 THR CG2 HG23 sing N N 350 THR OXT HXT sing N N 351 # _ndb_struct_conf_na.entry_id 7DQ0 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 7 1_555 0.041 -0.044 -0.201 -12.002 -3.750 5.845 1 A_DA1:DT7_B A 1 ? B 7 ? 20 1 1 A DG 2 1_555 B DC 6 1_555 -0.358 -0.021 0.377 5.036 5.136 3.176 2 A_DG2:DC6_B A 2 ? B 6 ? 19 1 1 A DC 3 1_555 B DG 5 1_555 0.219 -0.119 0.835 -15.030 5.598 2.880 3 A_DC3:DG5_B A 3 ? B 5 ? 19 1 1 A DT 4 1_555 B DT 4 1_555 -2.266 -1.871 0.369 11.029 -0.984 8.691 4 A_DT4:DT4_B A 4 ? B 4 ? 16 1 1 A DC 5 1_555 B DG 3 1_555 0.282 -0.021 0.581 -26.165 -11.780 -1.180 5 A_DC5:DG3_B A 5 ? B 3 ? 19 1 1 A DG 6 1_555 B DC 2 1_555 -0.282 -0.209 0.547 17.793 -1.640 -0.816 6 A_DG6:DC2_B A 6 ? B 2 ? 19 1 1 A DT 7 1_555 B DA 1 1_555 -0.132 -0.140 0.393 -15.525 4.568 4.562 7 A_DT7:DA1_B A 7 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 7 1_555 A DG 2 1_555 B DC 6 1_555 -0.103 0.187 3.004 -2.405 6.957 25.215 -1.331 -0.376 2.946 15.519 5.365 26.251 1 AA_DA1DG2:DC6DT7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 3 1_555 B DG 5 1_555 A DT 4 1_555 B DT 4 1_555 -0.059 1.364 2.836 3.575 8.978 11.588 -2.231 3.183 2.978 37.107 -14.778 15.078 2 AA_DC3DT4:DT4DG5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A DC 5 1_555 B DG 3 1_555 A DG 6 1_555 B DC 2 1_555 0.915 1.201 2.499 -0.664 4.185 -3.320 -29.268 7.130 0.721 -51.296 -8.140 -5.382 3 AA_DC5DG6:DC2DG3_BB A 5 ? B 3 ? A 6 ? B 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'ZINC ION' ZN 6 'CHLORIDE ION' CL 7 2-CARBOXYQUINOXALINE QUI 8 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 5YTZ '5YTZ, 1MNV' 2 ? 'experimental model' PDB 1MNV '5YTZ, 1MNV' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #