HEADER TRANSPORT PROTEIN 24-DEC-20 7DQK TITLE A NICOTINE MATE TRANSPORTER, NICOTIANA TABACUM MATE2 (NTMATE2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DETOXIFICATION; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: NTMATE2, LOC107807968; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SMD1163; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC9K KEYWDS MULTIDRUG EFFLUX TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,T.TSUKAZAKI,A.SASAKI,S.IWAKI REVDAT 3 29-NOV-23 7DQK 1 REMARK REVDAT 2 11-AUG-21 7DQK 1 JRNL REVDAT 1 09-JUN-21 7DQK 0 JRNL AUTH Y.TANAKA,S.IWAKI,A.SASAKI,T.TSUKAZAKI JRNL TITL CRYSTAL STRUCTURES OF A NICOTINE MATE TRANSPORTER PROVIDE JRNL TITL 2 INSIGHT INTO ITS MECHANISM OF SUBSTRATE TRANSPORT. JRNL REF FEBS LETT. V. 595 1902 2021 JRNL REFN ISSN 0014-5793 JRNL PMID 34050946 JRNL DOI 10.1002/1873-3468.14136 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC6_4061 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2000 - 8.0000 0.99 1341 149 0.2021 0.2557 REMARK 3 2 8.0000 - 6.3600 1.00 1262 140 0.2456 0.2817 REMARK 3 3 6.3600 - 5.5500 1.00 1243 138 0.2844 0.3564 REMARK 3 4 5.5500 - 5.0500 1.00 1239 139 0.2619 0.3082 REMARK 3 5 5.0500 - 4.6900 1.00 1217 136 0.2499 0.2968 REMARK 3 6 4.6900 - 4.4100 0.99 1224 136 0.2635 0.3219 REMARK 3 7 4.4100 - 4.1900 1.00 1226 136 0.2592 0.2973 REMARK 3 8 4.1900 - 4.0100 1.00 1205 133 0.2751 0.3396 REMARK 3 9 4.0100 - 3.8500 1.00 1209 134 0.2858 0.3393 REMARK 3 10 3.8500 - 3.7200 1.00 1212 134 0.3048 0.3988 REMARK 3 11 3.7200 - 3.6000 1.00 1202 133 0.3215 0.3470 REMARK 3 12 3.6000 - 3.5000 1.00 1226 136 0.3745 0.4258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.567 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7541 REMARK 3 ANGLE : 0.438 10253 REMARK 3 CHIRALITY : 0.033 1198 REMARK 3 PLANARITY : 0.003 1246 REMARK 3 DIHEDRAL : 4.403 1042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1418 -52.5684 -17.2266 REMARK 3 T TENSOR REMARK 3 T11: 1.5096 T22: 1.2358 REMARK 3 T33: 1.1361 T12: 0.4422 REMARK 3 T13: -0.2671 T23: -0.2475 REMARK 3 L TENSOR REMARK 3 L11: 3.5110 L22: 0.2866 REMARK 3 L33: 3.2772 L12: 0.2713 REMARK 3 L13: 2.2524 L23: 0.0451 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: -0.3458 S13: 0.6085 REMARK 3 S21: 0.3131 S22: -0.1383 S23: -0.5231 REMARK 3 S31: 0.7317 S32: 0.5375 S33: 0.3527 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8413 -42.7563 -26.4663 REMARK 3 T TENSOR REMARK 3 T11: 0.7218 T22: 0.6393 REMARK 3 T33: 0.6363 T12: 0.0673 REMARK 3 T13: 0.0553 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.2087 L22: 1.2961 REMARK 3 L33: 1.2428 L12: 0.1106 REMARK 3 L13: -0.0124 L23: 0.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: -0.0433 S13: -0.0387 REMARK 3 S21: -0.1118 S22: -0.0770 S23: -0.2551 REMARK 3 S31: 0.4703 S32: 0.1038 S33: 0.0847 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9422 -38.6614 -30.0699 REMARK 3 T TENSOR REMARK 3 T11: 0.9046 T22: 0.6290 REMARK 3 T33: 0.7068 T12: 0.0428 REMARK 3 T13: -0.0448 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 2.4052 L22: 0.4519 REMARK 3 L33: 2.0042 L12: -0.1282 REMARK 3 L13: -0.1561 L23: -0.9285 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.1535 S13: 0.0509 REMARK 3 S21: 0.2469 S22: 0.0695 S23: 0.0059 REMARK 3 S31: 0.1705 S32: 0.1740 S33: -0.1284 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1598 -18.7444 -20.0722 REMARK 3 T TENSOR REMARK 3 T11: 0.9003 T22: 0.9553 REMARK 3 T33: 0.7220 T12: -0.0877 REMARK 3 T13: -0.0124 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.0368 L22: 1.5908 REMARK 3 L33: 0.2318 L12: -0.4365 REMARK 3 L13: 0.4525 L23: -0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.2366 S12: -0.3001 S13: 0.2459 REMARK 3 S21: 0.1635 S22: 0.2737 S23: -0.2346 REMARK 3 S31: -0.2012 S32: -0.5218 S33: -0.0647 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7761 -4.9256 -33.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.7854 T22: 0.8507 REMARK 3 T33: 0.6530 T12: -0.0091 REMARK 3 T13: 0.0157 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.6517 L22: 1.1408 REMARK 3 L33: 1.9458 L12: 0.0532 REMARK 3 L13: -0.4398 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0335 S13: 0.0970 REMARK 3 S21: -0.0066 S22: 0.1053 S23: 0.0735 REMARK 3 S31: -0.3935 S32: -0.1314 S33: -0.1277 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 405 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5006 -8.1311 -26.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.5802 T22: 0.9439 REMARK 3 T33: 0.8162 T12: 0.1119 REMARK 3 T13: -0.0605 T23: 0.1212 REMARK 3 L TENSOR REMARK 3 L11: 0.9449 L22: 1.2127 REMARK 3 L33: 1.3640 L12: 0.5254 REMARK 3 L13: -0.9598 L23: -1.1359 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: -0.1744 S13: 1.0315 REMARK 3 S21: 0.3044 S22: -0.5511 S23: -0.3085 REMARK 3 S31: -0.0685 S32: 0.8481 S33: -0.0404 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3888 -9.5868 -29.0748 REMARK 3 T TENSOR REMARK 3 T11: 0.6593 T22: 0.7008 REMARK 3 T33: 0.6489 T12: 0.0948 REMARK 3 T13: 0.0376 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.9386 L22: 1.5994 REMARK 3 L33: 3.0784 L12: 0.5763 REMARK 3 L13: 1.3253 L23: -0.3335 REMARK 3 S TENSOR REMARK 3 S11: 0.2804 S12: -0.0369 S13: 0.0643 REMARK 3 S21: 0.0184 S22: 0.0665 S23: -0.2898 REMARK 3 S31: -0.5095 S32: 0.0358 S33: 0.0304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16478 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 34.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MONOOLEIN (NU-CHEK-PREP), PEG 300 REMARK 280 (SIGMA-ALDRICH), NH4H2PO4, HEPES-NA, 2.5 MM NICOTINE, PH 7.5, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.48000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.48000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 LYS A 494 REMARK 465 GLY A 495 REMARK 465 PRO A 496 REMARK 465 LEU A 497 REMARK 465 ASN A 498 REMARK 465 LYS A 499 REMARK 465 GLU A 500 REMARK 465 GLU A 501 REMARK 465 PHE A 502 REMARK 465 PRO A 503 REMARK 465 GLY A 504 REMARK 465 GLU A 505 REMARK 465 ASN A 506 REMARK 465 LEU A 507 REMARK 465 TYR A 508 REMARK 465 PHE A 509 REMARK 465 GLN A 510 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 MET B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 GLU B 8 REMARK 465 VAL B 9 REMARK 465 GLU B 10 REMARK 465 GLN B 11 REMARK 465 PRO B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 LYS B 494 REMARK 465 GLY B 495 REMARK 465 PRO B 496 REMARK 465 LEU B 497 REMARK 465 ASN B 498 REMARK 465 LYS B 499 REMARK 465 GLU B 500 REMARK 465 GLU B 501 REMARK 465 PHE B 502 REMARK 465 PRO B 503 REMARK 465 GLY B 504 REMARK 465 GLU B 505 REMARK 465 ASN B 506 REMARK 465 LEU B 507 REMARK 465 TYR B 508 REMARK 465 PHE B 509 REMARK 465 GLN B 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 195 75.81 -104.82 REMARK 500 PHE B 379 -61.30 -90.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 708 DISTANCE = 5.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 602 DBREF 7DQK A 1 500 UNP A3KDM5 A3KDM5_TOBAC 1 500 DBREF 7DQK B 1 500 UNP A3KDM5 A3KDM5_TOBAC 1 500 SEQADV 7DQK GLU A 501 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK PHE A 502 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK PRO A 503 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLY A 504 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLU A 505 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK ASN A 506 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK LEU A 507 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK TYR A 508 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK PHE A 509 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLN A 510 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLU B 501 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK PHE B 502 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK PRO B 503 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLY B 504 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLU B 505 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK ASN B 506 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK LEU B 507 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK TYR B 508 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK PHE B 509 UNP A3KDM5 EXPRESSION TAG SEQADV 7DQK GLN B 510 UNP A3KDM5 EXPRESSION TAG SEQRES 1 A 510 MET GLY LYS SER MET LYS SER GLU VAL GLU GLN PRO LEU SEQRES 2 A 510 LEU ALA ALA ALA HIS GLY GLY SER SER GLU LEU GLU GLU SEQRES 3 A 510 VAL LEU SER ASP SER GLN LEU PRO TYR PHE ARG ARG LEU SEQRES 4 A 510 ARG TYR ALA SER TRP ILE GLU PHE GLN LEU LEU TYR ARG SEQRES 5 A 510 LEU ALA ALA PRO SER VAL ALA VAL TYR MET ILE ASN ASN SEQRES 6 A 510 ALA MET SER MET SER THR ARG ILE PHE SER GLY GLN LEU SEQRES 7 A 510 GLY ASN LEU GLN LEU ALA ALA ALA SER LEU GLY ASN GLN SEQRES 8 A 510 GLY ILE GLN LEU PHE ALA TYR GLY LEU MET LEU GLY MET SEQRES 9 A 510 GLY SER ALA VAL GLU THR LEU CYS GLY GLN ALA TYR GLY SEQRES 10 A 510 ALA HIS ARG TYR GLU MET LEU GLY VAL TYR LEU GLN ARG SEQRES 11 A 510 ALA THR VAL VAL LEU SER LEU THR GLY ILE PRO LEU ALA SEQRES 12 A 510 VAL VAL TYR LEU PHE SER LYS ASN ILE LEU LEU ALA LEU SEQRES 13 A 510 GLY GLU SER LYS LEU VAL ALA SER ALA ALA ALA VAL PHE SEQRES 14 A 510 VAL TYR GLY LEU ILE PRO GLN ILE PHE ALA TYR ALA VAL SEQRES 15 A 510 ASN PHE PRO ILE GLN LYS PHE LEU GLN SER GLN SER ILE SEQRES 16 A 510 VAL ALA PRO SER ALA PHE ILE SER LEU GLY THR LEU PHE SEQRES 17 A 510 VAL HIS ILE LEU LEU SER TRP VAL VAL VAL TYR LYS ILE SEQRES 18 A 510 GLY LEU GLY LEU LEU GLY ALA SER LEU VAL LEU SER PHE SEQRES 19 A 510 SER TRP TRP ILE ILE VAL VAL ALA GLN PHE ILE TYR ILE SEQRES 20 A 510 LEU LYS SER GLU ARG CYS LYS ALA THR TRP ALA GLY PHE SEQRES 21 A 510 ARG TRP GLU ALA PHE SER GLY LEU TRP GLN PHE VAL LYS SEQRES 22 A 510 LEU SER ALA GLY SER ALA VAL MET LEU CYS LEU GLU THR SEQRES 23 A 510 TRP TYR PHE GLN ILE LEU VAL LEU LEU SER GLY LEU LEU SEQRES 24 A 510 LYS ASN PRO GLU ILE ALA LEU ALA SER ILE SER VAL CYS SEQRES 25 A 510 LEU ALA VAL ASN GLY LEU MET PHE MET VAL ALA VAL GLY SEQRES 26 A 510 PHE ASN ALA ALA ALA SER VAL ARG VAL SER ASN GLU LEU SEQRES 27 A 510 GLY ALA ALA HIS PRO LYS SER ALA ALA PHE SER VAL PHE SEQRES 28 A 510 MET VAL THR PHE ILE SER PHE LEU ILE ALA VAL VAL GLU SEQRES 29 A 510 ALA ILE ILE VAL LEU SER LEU ARG ASN VAL ILE SER TYR SEQRES 30 A 510 ALA PHE THR GLU GLY GLU VAL VAL ALA LYS GLU VAL SER SEQRES 31 A 510 SER LEU CYS PRO TYR LEU ALA VAL THR LEU ILE LEU ASN SEQRES 32 A 510 GLY ILE GLN PRO VAL LEU SER GLY VAL ALA VAL GLY CYS SEQRES 33 A 510 GLY TRP GLN ALA PHE VAL ALA TYR VAL ASN VAL GLY CYS SEQRES 34 A 510 TYR TYR GLY VAL GLY ILE PRO LEU GLY CYS LEU LEU GLY SEQRES 35 A 510 PHE LYS PHE ASP PHE GLY ALA LYS GLY ILE TRP THR GLY SEQRES 36 A 510 MET ILE GLY GLY THR VAL MET GLN THR ILE ILE LEU LEU SEQRES 37 A 510 TRP VAL THR PHE SER THR ASP TRP ASN LYS GLU VAL GLU SEQRES 38 A 510 SER ALA ARG LYS ARG LEU ASP LYS TRP GLU ASN LEU LYS SEQRES 39 A 510 GLY PRO LEU ASN LYS GLU GLU PHE PRO GLY GLU ASN LEU SEQRES 40 A 510 TYR PHE GLN SEQRES 1 B 510 MET GLY LYS SER MET LYS SER GLU VAL GLU GLN PRO LEU SEQRES 2 B 510 LEU ALA ALA ALA HIS GLY GLY SER SER GLU LEU GLU GLU SEQRES 3 B 510 VAL LEU SER ASP SER GLN LEU PRO TYR PHE ARG ARG LEU SEQRES 4 B 510 ARG TYR ALA SER TRP ILE GLU PHE GLN LEU LEU TYR ARG SEQRES 5 B 510 LEU ALA ALA PRO SER VAL ALA VAL TYR MET ILE ASN ASN SEQRES 6 B 510 ALA MET SER MET SER THR ARG ILE PHE SER GLY GLN LEU SEQRES 7 B 510 GLY ASN LEU GLN LEU ALA ALA ALA SER LEU GLY ASN GLN SEQRES 8 B 510 GLY ILE GLN LEU PHE ALA TYR GLY LEU MET LEU GLY MET SEQRES 9 B 510 GLY SER ALA VAL GLU THR LEU CYS GLY GLN ALA TYR GLY SEQRES 10 B 510 ALA HIS ARG TYR GLU MET LEU GLY VAL TYR LEU GLN ARG SEQRES 11 B 510 ALA THR VAL VAL LEU SER LEU THR GLY ILE PRO LEU ALA SEQRES 12 B 510 VAL VAL TYR LEU PHE SER LYS ASN ILE LEU LEU ALA LEU SEQRES 13 B 510 GLY GLU SER LYS LEU VAL ALA SER ALA ALA ALA VAL PHE SEQRES 14 B 510 VAL TYR GLY LEU ILE PRO GLN ILE PHE ALA TYR ALA VAL SEQRES 15 B 510 ASN PHE PRO ILE GLN LYS PHE LEU GLN SER GLN SER ILE SEQRES 16 B 510 VAL ALA PRO SER ALA PHE ILE SER LEU GLY THR LEU PHE SEQRES 17 B 510 VAL HIS ILE LEU LEU SER TRP VAL VAL VAL TYR LYS ILE SEQRES 18 B 510 GLY LEU GLY LEU LEU GLY ALA SER LEU VAL LEU SER PHE SEQRES 19 B 510 SER TRP TRP ILE ILE VAL VAL ALA GLN PHE ILE TYR ILE SEQRES 20 B 510 LEU LYS SER GLU ARG CYS LYS ALA THR TRP ALA GLY PHE SEQRES 21 B 510 ARG TRP GLU ALA PHE SER GLY LEU TRP GLN PHE VAL LYS SEQRES 22 B 510 LEU SER ALA GLY SER ALA VAL MET LEU CYS LEU GLU THR SEQRES 23 B 510 TRP TYR PHE GLN ILE LEU VAL LEU LEU SER GLY LEU LEU SEQRES 24 B 510 LYS ASN PRO GLU ILE ALA LEU ALA SER ILE SER VAL CYS SEQRES 25 B 510 LEU ALA VAL ASN GLY LEU MET PHE MET VAL ALA VAL GLY SEQRES 26 B 510 PHE ASN ALA ALA ALA SER VAL ARG VAL SER ASN GLU LEU SEQRES 27 B 510 GLY ALA ALA HIS PRO LYS SER ALA ALA PHE SER VAL PHE SEQRES 28 B 510 MET VAL THR PHE ILE SER PHE LEU ILE ALA VAL VAL GLU SEQRES 29 B 510 ALA ILE ILE VAL LEU SER LEU ARG ASN VAL ILE SER TYR SEQRES 30 B 510 ALA PHE THR GLU GLY GLU VAL VAL ALA LYS GLU VAL SER SEQRES 31 B 510 SER LEU CYS PRO TYR LEU ALA VAL THR LEU ILE LEU ASN SEQRES 32 B 510 GLY ILE GLN PRO VAL LEU SER GLY VAL ALA VAL GLY CYS SEQRES 33 B 510 GLY TRP GLN ALA PHE VAL ALA TYR VAL ASN VAL GLY CYS SEQRES 34 B 510 TYR TYR GLY VAL GLY ILE PRO LEU GLY CYS LEU LEU GLY SEQRES 35 B 510 PHE LYS PHE ASP PHE GLY ALA LYS GLY ILE TRP THR GLY SEQRES 36 B 510 MET ILE GLY GLY THR VAL MET GLN THR ILE ILE LEU LEU SEQRES 37 B 510 TRP VAL THR PHE SER THR ASP TRP ASN LYS GLU VAL GLU SEQRES 38 B 510 SER ALA ARG LYS ARG LEU ASP LYS TRP GLU ASN LEU LYS SEQRES 39 B 510 GLY PRO LEU ASN LYS GLU GLU PHE PRO GLY GLU ASN LEU SEQRES 40 B 510 TYR PHE GLN HET PEG A 601 7 HET OLC A 602 25 HET PO4 A 603 5 HET CL B 601 1 HET PO4 B 602 5 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 3 PEG C4 H10 O3 FORMUL 4 OLC C21 H40 O4 FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 CL CL 1- FORMUL 8 HOH *15(H2 O) HELIX 1 AA1 GLY A 19 ASP A 30 1 12 HELIX 2 AA2 PRO A 34 GLN A 77 1 44 HELIX 3 AA3 GLY A 79 GLY A 92 1 14 HELIX 4 AA4 ILE A 93 GLY A 105 1 13 HELIX 5 AA5 SER A 106 ALA A 118 1 13 HELIX 6 AA6 ARG A 120 GLU A 122 5 3 HELIX 7 AA7 MET A 123 GLY A 139 1 17 HELIX 8 AA8 ILE A 140 PHE A 148 1 9 HELIX 9 AA9 PHE A 148 LEU A 156 1 9 HELIX 10 AB1 SER A 159 GLY A 172 1 14 HELIX 11 AB2 LEU A 173 GLN A 193 1 21 HELIX 12 AB3 VAL A 196 LYS A 220 1 25 HELIX 13 AB4 LEU A 223 SER A 250 1 28 HELIX 14 AB5 ARG A 261 SER A 266 5 6 HELIX 15 AB6 GLY A 267 LEU A 299 1 33 HELIX 16 AB7 ASN A 301 ALA A 340 1 40 HELIX 17 AB8 HIS A 342 LEU A 371 1 30 HELIX 18 AB9 ASN A 373 THR A 380 1 8 HELIX 19 AC1 GLY A 382 ASN A 403 1 22 HELIX 20 AC2 ILE A 405 CYS A 416 1 12 HELIX 21 AC3 TRP A 418 TYR A 431 1 14 HELIX 22 AC4 VAL A 433 PHE A 443 1 11 HELIX 23 AC5 GLY A 448 SER A 473 1 26 HELIX 24 AC6 ASP A 475 LEU A 493 1 19 HELIX 25 AC7 GLU B 23 SER B 31 1 9 HELIX 26 AC8 PRO B 34 LEU B 78 1 45 HELIX 27 AC9 GLY B 79 ILE B 93 1 15 HELIX 28 AD1 ILE B 93 ALA B 118 1 26 HELIX 29 AD2 TYR B 121 PHE B 148 1 28 HELIX 30 AD3 PHE B 148 GLY B 157 1 10 HELIX 31 AD4 SER B 159 GLY B 172 1 14 HELIX 32 AD5 ILE B 174 GLN B 193 1 20 HELIX 33 AD6 VAL B 196 LYS B 220 1 25 HELIX 34 AD7 GLY B 224 ILE B 247 1 24 HELIX 35 AD8 SER B 250 LYS B 254 5 5 HELIX 36 AD9 ARG B 261 SER B 266 5 6 HELIX 37 AE1 GLY B 267 SER B 278 1 12 HELIX 38 AE2 SER B 278 GLY B 297 1 20 HELIX 39 AE3 ILE B 304 ALA B 340 1 37 HELIX 40 AE4 HIS B 342 LEU B 371 1 30 HELIX 41 AE5 VAL B 374 THR B 380 1 7 HELIX 42 AE6 GLY B 382 ASN B 403 1 22 HELIX 43 AE7 ILE B 405 GLY B 417 1 13 HELIX 44 AE8 TRP B 418 TYR B 431 1 14 HELIX 45 AE9 VAL B 433 PHE B 443 1 11 HELIX 46 AF1 GLY B 448 THR B 474 1 27 HELIX 47 AF2 ASP B 475 LEU B 493 1 19 SITE 1 AC1 5 LEU A 128 THR A 132 VAL A 182 PHE A 244 SITE 2 AC1 5 PHE A 260 SITE 1 AC2 9 VAL A 133 SER A 136 TRP A 262 PHE A 265 SITE 2 AC2 9 SER A 266 LEU A 268 PHE B 348 PHE B 351 SITE 3 AC2 9 PHE B 355 SITE 1 AC3 2 TYR A 61 ASN A 65 SITE 1 AC4 2 LYS A 160 ARG B 372 SITE 1 AC5 4 SER B 68 ASN B 90 GLN B 94 TYR B 180 CRYST1 61.000 89.370 228.960 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004368 0.00000