HEADER NUCLEAR PROTEIN 05-JAN-21 7DTH TITLE SOLUTION STRUCTURE OF RPB6, COMMON SUBUNIT OF RNA POLYMERASES I, II, TITLE 2 AND III COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA POLYMERASES I,II,AND III SUBUNIT ABC2,DNA-DIRECTED RNA COMPND 5 POLYMERASE II SUBUNIT F,DNA-DIRECTED RNA POLYMERASES I,AND III 14.4 COMPND 6 KDA POLYPEPTIDE,RPABC14.4,RPB14.4,RPB6 HOMOLOG,RPC15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLR2F, POLRF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA POLYMERASE, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 4 15-MAY-24 7DTH 1 REMARK REVDAT 3 14-JUN-23 7DTH 1 REMARK REVDAT 2 03-AUG-22 7DTH 1 JRNL REVDAT 1 19-JAN-22 7DTH 0 JRNL AUTH M.OKUDA,T.SUWA,H.SUZUKI,Y.YAMAGUCHI,Y.NISHIMURA JRNL TITL THREE HUMAN RNA POLYMERASES INTERACT WITH TFIIH VIA A COMMON JRNL TITL 2 RPB6 SUBUNIT. JRNL REF NUCLEIC ACIDS RES. V. 50 1 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 34268577 JRNL DOI 10.1093/NAR/GKAB612 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300019880. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-100% 13C; U-100% 15N] REMARK 210 RPB6, 90% H2O/10% D2O; 2.0 MM [U- REMARK 210 100% 13C; U-100% 15N] RPB6, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D CBCANH; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HBHA(CO)NH; 3D REMARK 210 HBHANH; 3D HN(CO)HB; 3D HNHB; 3D REMARK 210 HN(CO)CG; 3D HNCG; 3D CC(CO)NH; REMARK 210 3D HCC(CO)NH; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP A 88 HD12 LEU A 91 1.23 REMARK 500 HG22 VAL A 36 HE1 TYR A 60 1.27 REMARK 500 HZ1 LYS A 98 OD1 ASP A 127 1.52 REMARK 500 H MET A 1 OD1 ASP A 6 1.52 REMARK 500 HH22 ARG A 51 OE1 GLU A 122 1.58 REMARK 500 H ILE A 106 O TRP A 118 1.59 REMARK 500 HH22 ARG A 44 OE1 GLU A 122 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 37.63 -96.08 REMARK 500 1 ASN A 27 96.19 -166.82 REMARK 500 1 ALA A 28 93.36 -166.08 REMARK 500 1 ARG A 44 86.25 67.12 REMARK 500 1 THR A 58 -177.03 -65.71 REMARK 500 1 CYS A 76 39.19 71.81 REMARK 500 1 GLU A 84 38.25 -96.54 REMARK 500 1 THR A 87 -11.91 -150.26 REMARK 500 1 SER A 114 -159.59 -94.53 REMARK 500 2 ASP A 3 -72.17 -108.32 REMARK 500 2 ASN A 27 101.25 -168.68 REMARK 500 2 ALA A 28 28.14 -169.94 REMARK 500 2 ARG A 44 137.35 79.28 REMARK 500 2 ASN A 48 20.05 -144.22 REMARK 500 2 CYS A 76 39.82 70.76 REMARK 500 2 GLU A 84 38.30 -95.97 REMARK 500 2 THR A 87 -12.30 -151.17 REMARK 500 3 ASP A 3 -64.80 -104.30 REMARK 500 3 GLU A 17 97.48 -68.73 REMARK 500 3 GLU A 20 116.19 -163.45 REMARK 500 3 LEU A 25 -69.52 -91.25 REMARK 500 3 GLU A 43 -36.12 -136.16 REMARK 500 3 ARG A 44 84.91 64.33 REMARK 500 3 ASN A 48 30.76 -93.47 REMARK 500 3 THR A 58 -179.00 -67.59 REMARK 500 3 CYS A 76 39.77 73.17 REMARK 500 3 GLU A 84 38.13 -94.94 REMARK 500 3 THR A 87 -9.83 -151.11 REMARK 500 4 GLU A 26 140.43 72.93 REMARK 500 4 GLU A 34 -167.91 -129.89 REMARK 500 4 ARG A 44 89.69 78.55 REMARK 500 4 ASN A 48 39.45 -82.80 REMARK 500 4 CYS A 76 40.19 70.47 REMARK 500 4 THR A 87 -12.15 -151.27 REMARK 500 5 GLU A 26 137.85 -175.12 REMARK 500 5 ASN A 27 45.03 -161.49 REMARK 500 5 GLU A 43 96.96 170.02 REMARK 500 5 PRO A 45 171.42 -55.92 REMARK 500 5 ALA A 47 144.33 -38.61 REMARK 500 5 ASN A 48 41.65 -65.88 REMARK 500 5 GLN A 49 177.08 -55.95 REMARK 500 5 LYS A 50 96.86 -51.93 REMARK 500 5 CYS A 76 33.49 74.01 REMARK 500 5 GLU A 84 38.48 -96.58 REMARK 500 5 THR A 87 -11.82 -151.01 REMARK 500 6 ASN A 7 44.17 -97.79 REMARK 500 6 ASP A 12 38.20 -90.04 REMARK 500 6 GLU A 26 152.68 73.12 REMARK 500 6 GLU A 31 -179.75 -65.49 REMARK 500 6 SER A 41 103.64 -56.13 REMARK 500 REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36405 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF RPB6, COMMON SUBUNIT OF RNA POLYMERASES I, II, REMARK 900 AND III DBREF 7DTH A 1 127 UNP P61218 RPAB2_HUMAN 1 127 SEQADV 7DTH GLY A -2 UNP P61218 EXPRESSION TAG SEQADV 7DTH SER A -1 UNP P61218 EXPRESSION TAG SEQADV 7DTH HIS A 0 UNP P61218 EXPRESSION TAG SEQRES 1 A 130 GLY SER HIS MET SER ASP ASN GLU ASP ASN PHE ASP GLY SEQRES 2 A 130 ASP ASP PHE ASP ASP VAL GLU GLU ASP GLU GLY LEU ASP SEQRES 3 A 130 ASP LEU GLU ASN ALA GLU GLU GLU GLY GLN GLU ASN VAL SEQRES 4 A 130 GLU ILE LEU PRO SER GLY GLU ARG PRO GLN ALA ASN GLN SEQRES 5 A 130 LYS ARG ILE THR THR PRO TYR MET THR LYS TYR GLU ARG SEQRES 6 A 130 ALA ARG VAL LEU GLY THR ARG ALA LEU GLN ILE ALA MET SEQRES 7 A 130 CYS ALA PRO VAL MET VAL GLU LEU GLU GLY GLU THR ASP SEQRES 8 A 130 PRO LEU LEU ILE ALA MET LYS GLU LEU LYS ALA ARG LYS SEQRES 9 A 130 ILE PRO ILE ILE ILE ARG ARG TYR LEU PRO ASP GLY SER SEQRES 10 A 130 TYR GLU ASP TRP GLY VAL ASP GLU LEU ILE ILE THR ASP HELIX 1 AA1 SER A 2 ASN A 7 1 6 HELIX 2 AA2 THR A 58 MET A 75 1 18 HELIX 3 AA3 ASP A 88 ALA A 99 1 12 HELIX 4 AA4 ASP A 121 LEU A 123 5 3 SHEET 1 AA1 3 VAL A 36 LEU A 39 0 SHEET 2 AA1 3 ILE A 105 TYR A 109 -1 O ILE A 105 N LEU A 39 SHEET 3 AA1 3 TYR A 115 GLY A 119 -1 O TRP A 118 N ILE A 106 SHEET 1 AA2 2 TYR A 56 MET A 57 0 SHEET 2 AA2 2 ILE A 124 ILE A 125 1 O ILE A 124 N MET A 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1