HEADER PROTEIN BINDING 07-JAN-21 7DU3 TITLE THIL IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE-MONOPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIAMINE-PHOSPHATE KINASE; COMPND 5 EC: 2.7.4.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: THIL, CAZ10_30480, DY930_26150, FDK04_05055, IPC116_27470, SOURCE 5 IPC1323_04495, IPC1509_03965, IPC582_16370, IPC620_29520, SOURCE 6 NCTC13621_06786; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.Q.LIN,J.LESCAR REVDAT 2 29-NOV-23 7DU3 1 REMARK REVDAT 1 09-MAR-22 7DU3 0 JRNL AUTH J.Q.LIN,J.LESCAR JRNL TITL THIL IN COMPLEX WITH AMP-PNP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5900 - 6.8900 1.00 2615 142 0.1403 0.1972 REMARK 3 2 6.8900 - 5.4700 1.00 2625 140 0.1840 0.1626 REMARK 3 3 5.4700 - 4.7800 1.00 2602 139 0.1446 0.1954 REMARK 3 4 4.7800 - 4.3500 1.00 2623 137 0.1327 0.1630 REMARK 3 5 4.3500 - 4.0400 1.00 2606 139 0.1392 0.1920 REMARK 3 6 4.0400 - 3.8000 1.00 2620 139 0.1526 0.1846 REMARK 3 7 3.8000 - 3.6100 1.00 2632 140 0.1456 0.1863 REMARK 3 8 3.6100 - 3.4500 1.00 2617 137 0.1687 0.1975 REMARK 3 9 3.4500 - 3.3200 1.00 2597 137 0.1832 0.1826 REMARK 3 10 3.3200 - 3.2000 1.00 2648 139 0.1923 0.2381 REMARK 3 11 3.2000 - 3.1000 1.00 2579 135 0.1903 0.2424 REMARK 3 12 3.1000 - 3.0100 1.00 2647 141 0.2058 0.2819 REMARK 3 13 3.0100 - 2.9400 1.00 2609 139 0.2062 0.2810 REMARK 3 14 2.9400 - 2.8600 1.00 2626 138 0.2181 0.2662 REMARK 3 15 2.8600 - 2.8000 1.00 2610 136 0.2111 0.3040 REMARK 3 16 2.8000 - 2.7400 1.00 2658 136 0.2383 0.2883 REMARK 3 17 2.7400 - 2.6800 1.00 2552 137 0.2388 0.2496 REMARK 3 18 2.6800 - 2.6300 1.00 2648 139 0.2500 0.2867 REMARK 3 19 2.6300 - 2.5900 1.00 2600 136 0.2583 0.2884 REMARK 3 20 2.5900 - 2.5400 0.85 2250 120 0.3187 0.3840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.315 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4753 REMARK 3 ANGLE : 1.088 6484 REMARK 3 CHIRALITY : 0.056 750 REMARK 3 PLANARITY : 0.007 853 REMARK 3 DIHEDRAL : 17.639 1677 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 19 through 329) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 19 through 329) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300019883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6XEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M DL-GLUTAMIC ACID MONOHYDRATE, REMARK 280 0.02M DL-ALANINE, 0.02M GLYCINE, 0.02M DL-LYSINE REMARK 280 MONOHYDROCHLORIDE, 0.02M DL-SERINE, 0.061M TRIS, 0.039M BICINE, REMARK 280 PH 8.5, 20% V/V PEG 500 MME, 10% W/V PEG 20000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.23500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.23500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.23500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.41000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.90000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.23500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.41000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.90000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.41000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 57.90000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 66.23500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 ILE A 330 REMARK 465 PRO A 331 REMARK 465 ALA A 332 REMARK 465 ALA A 333 REMARK 465 ALA A 334 REMARK 465 GLY A 335 REMARK 465 TYR A 336 REMARK 465 GLN A 337 REMARK 465 HIS A 338 REMARK 465 PHE A 339 REMARK 465 GLY A 340 REMARK 465 THR A 341 REMARK 465 GLN A 342 REMARK 465 ARG A 343 REMARK 465 ASP A 344 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 PHE B 339 REMARK 465 GLY B 340 REMARK 465 THR B 341 REMARK 465 GLN B 342 REMARK 465 ARG B 343 REMARK 465 ASP B 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 509 O HOH B 555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 501 O HOH B 558 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 75 -55.67 -129.31 REMARK 500 LEU A 106 -60.10 -134.14 REMARK 500 ALA A 199 149.88 -171.45 REMARK 500 GLU B 16 65.73 61.46 REMARK 500 ALA B 60 -149.78 53.10 REMARK 500 VAL B 75 -53.72 -127.57 REMARK 500 LEU B 106 -58.90 -135.59 REMARK 500 ALA B 281 -0.99 -146.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 588 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD1 REMARK 620 2 ASP A 97 OD1 96.9 REMARK 620 3 ASP A 233 OD1 96.2 1.1 REMARK 620 4 HOH A 512 O 106.2 142.3 142.0 REMARK 620 5 HOH A 519 O 170.5 74.2 74.8 80.0 REMARK 620 6 HOH A 521 O 98.9 48.0 47.2 98.3 72.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 ASP A 69 OD2 51.9 REMARK 620 3 ASP A 97 OD2 159.3 107.6 REMARK 620 4 ANP A 401 O1G 59.1 41.9 104.5 REMARK 620 5 HOH A 506 O 62.5 40.8 100.6 4.4 REMARK 620 6 HOH A 509 O 61.4 48.2 103.8 6.3 8.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 144 OD1 REMARK 620 2 ANP A 401 O2G 94.9 REMARK 620 3 ANP A 401 O1B 172.6 81.2 REMARK 620 4 ANP A 401 O2A 89.4 94.4 84.7 REMARK 620 5 HOH A 510 O 82.9 169.3 99.8 75.1 REMARK 620 6 HOH A 533 O 105.9 108.4 81.3 150.9 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 52 OD1 REMARK 620 2 ASP B 97 OD1 97.2 REMARK 620 3 ASP B 233 OD1 96.6 1.3 REMARK 620 4 HOH B 518 O 100.5 5.1 4.8 REMARK 620 5 HOH B 520 O 102.8 5.8 6.8 5.8 REMARK 620 6 HOH B 531 O 101.4 4.2 5.1 4.4 1.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 69 OD1 REMARK 620 2 ASP B 69 OD2 57.9 REMARK 620 3 ASP B 97 OD2 150.0 93.7 REMARK 620 4 ANP B 401 O2G 97.7 151.9 106.5 REMARK 620 5 HOH B 502 O 87.4 83.3 99.5 111.6 REMARK 620 6 HOH B 512 O 80.5 83.2 87.1 78.5 165.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 144 OD1 REMARK 620 2 ANP B 401 O1G 9.3 REMARK 620 3 ANP B 401 O1B 13.7 4.4 REMARK 620 4 ANP B 401 O2A 15.3 6.8 5.2 REMARK 620 5 HOH B 530 O 19.7 10.4 6.1 6.6 REMARK 620 6 HOH B 561 O 16.0 8.6 6.0 11.0 8.4 REMARK 620 N 1 2 3 4 5 DBREF1 7DU3 A 23 344 UNP A0A232BM78_PSEAI DBREF2 7DU3 A A0A232BM78 1 322 DBREF1 7DU3 B 23 344 UNP A0A232BM78_PSEAI DBREF2 7DU3 B A0A232BM78 1 322 SEQADV 7DU3 MET A 1 UNP A0A232BM7 INITIATING METHIONINE SEQADV 7DU3 HIS A 2 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS A 3 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS A 4 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS A 5 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS A 6 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS A 7 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 SER A 8 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 SER A 9 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLY A 10 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 VAL A 11 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 ASP A 12 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 LEU A 13 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLY A 14 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 THR A 15 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLU A 16 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 ASN A 17 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 LEU A 18 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 TYR A 19 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 PHE A 20 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLN A 21 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 SER A 22 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 MET B 1 UNP A0A232BM7 INITIATING METHIONINE SEQADV 7DU3 HIS B 2 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS B 3 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS B 4 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS B 5 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS B 6 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 HIS B 7 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 SER B 8 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 SER B 9 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLY B 10 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 VAL B 11 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 ASP B 12 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 LEU B 13 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLY B 14 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 THR B 15 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLU B 16 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 ASN B 17 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 LEU B 18 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 TYR B 19 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 PHE B 20 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 GLN B 21 UNP A0A232BM7 EXPRESSION TAG SEQADV 7DU3 SER B 22 UNP A0A232BM7 EXPRESSION TAG SEQRES 1 A 344 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 344 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU PHE SEQRES 3 A 344 GLU LEU ILE ARG ARG PHE PHE ALA ALA ALA ALA CYS ALA SEQRES 4 A 344 ALA PRO ALA ALA ASP VAL ALA LEU GLY ILE GLY ASP ASP SEQRES 5 A 344 CYS ALA LEU LEU ALA PRO PRO ALA GLY GLU GLN LEU ALA SEQRES 6 A 344 VAL SER THR ASP THR LEU VAL GLU GLY VAL HIS PHE PRO SEQRES 7 A 344 ALA GLY CYS ASP PRO PHE LEU LEU ALA GLN ARG ALA LEU SEQRES 8 A 344 ALA VAL SER ALA SER ASP LEU ALA ALA MET GLY ALA ALA SEQRES 9 A 344 PRO LEU ALA PHE THR LEU ALA LEU THR LEU PRO GLN ALA SEQRES 10 A 344 ASP ALA GLU TRP LEU GLN GLY PHE ALA ARG GLY LEU ASP SEQRES 11 A 344 ALA MET ALA ARG GLN CYS GLY LEU ALA LEU VAL GLY GLY SEQRES 12 A 344 ASP THR THR ARG GLY PRO LEU SER MET THR LEU THR VAL SEQRES 13 A 344 PHE GLY ARG VAL PRO ALA GLY GLN ALA LEU THR ARG ALA SEQRES 14 A 344 GLY ALA ARG PRO GLY ASP LEU LEU CYS VAL GLY GLY PRO SEQRES 15 A 344 LEU GLY GLU ALA GLY ALA ALA LEU GLU LEU VAL LEU GLU SEQRES 16 A 344 ARG ARG SER ALA PRO ALA GLU VAL ALA GLU PRO LEU LEU SEQRES 17 A 344 ALA ARG TYR TRP THR PRO ALA PRO GLN PHE GLY LEU GLY SEQRES 18 A 344 LEU ALA LEU ARG GLY LYS ALA SER ALA ALA LEU ASP ILE SEQRES 19 A 344 SER ASP GLY LEU LEU ALA ASP CYS GLY HIS ILE ALA ARG SEQRES 20 A 344 ALA SER GLY VAL ALA LEU LEU VAL GLU CYS GLN ARG LEU SEQRES 21 A 344 GLN ALA SER ALA ALA LEU SER GLY LEU LEU ALA GLY GLU SEQRES 22 A 344 GLU ALA LEU ARG GLN GLN LEU ALA ALA GLY ASP ASP TYR SEQRES 23 A 344 VAL LEU VAL PHE THR LEU PRO PRO GLU TYR LEU GLY GLU SEQRES 24 A 344 ILE ARG ALA ALA TRP PRO ALA MET ALA VAL ILE GLY ARG SEQRES 25 A 344 VAL GLU ALA GLY GLN GLY VAL HIS LEU LEU ASP ALA ASP SEQRES 26 A 344 GLY LYS GLU LEU ILE PRO ALA ALA ALA GLY TYR GLN HIS SEQRES 27 A 344 PHE GLY THR GLN ARG ASP SEQRES 1 B 344 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 344 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU PHE SEQRES 3 B 344 GLU LEU ILE ARG ARG PHE PHE ALA ALA ALA ALA CYS ALA SEQRES 4 B 344 ALA PRO ALA ALA ASP VAL ALA LEU GLY ILE GLY ASP ASP SEQRES 5 B 344 CYS ALA LEU LEU ALA PRO PRO ALA GLY GLU GLN LEU ALA SEQRES 6 B 344 VAL SER THR ASP THR LEU VAL GLU GLY VAL HIS PHE PRO SEQRES 7 B 344 ALA GLY CYS ASP PRO PHE LEU LEU ALA GLN ARG ALA LEU SEQRES 8 B 344 ALA VAL SER ALA SER ASP LEU ALA ALA MET GLY ALA ALA SEQRES 9 B 344 PRO LEU ALA PHE THR LEU ALA LEU THR LEU PRO GLN ALA SEQRES 10 B 344 ASP ALA GLU TRP LEU GLN GLY PHE ALA ARG GLY LEU ASP SEQRES 11 B 344 ALA MET ALA ARG GLN CYS GLY LEU ALA LEU VAL GLY GLY SEQRES 12 B 344 ASP THR THR ARG GLY PRO LEU SER MET THR LEU THR VAL SEQRES 13 B 344 PHE GLY ARG VAL PRO ALA GLY GLN ALA LEU THR ARG ALA SEQRES 14 B 344 GLY ALA ARG PRO GLY ASP LEU LEU CYS VAL GLY GLY PRO SEQRES 15 B 344 LEU GLY GLU ALA GLY ALA ALA LEU GLU LEU VAL LEU GLU SEQRES 16 B 344 ARG ARG SER ALA PRO ALA GLU VAL ALA GLU PRO LEU LEU SEQRES 17 B 344 ALA ARG TYR TRP THR PRO ALA PRO GLN PHE GLY LEU GLY SEQRES 18 B 344 LEU ALA LEU ARG GLY LYS ALA SER ALA ALA LEU ASP ILE SEQRES 19 B 344 SER ASP GLY LEU LEU ALA ASP CYS GLY HIS ILE ALA ARG SEQRES 20 B 344 ALA SER GLY VAL ALA LEU LEU VAL GLU CYS GLN ARG LEU SEQRES 21 B 344 GLN ALA SER ALA ALA LEU SER GLY LEU LEU ALA GLY GLU SEQRES 22 B 344 GLU ALA LEU ARG GLN GLN LEU ALA ALA GLY ASP ASP TYR SEQRES 23 B 344 VAL LEU VAL PHE THR LEU PRO PRO GLU TYR LEU GLY GLU SEQRES 24 B 344 ILE ARG ALA ALA TRP PRO ALA MET ALA VAL ILE GLY ARG SEQRES 25 B 344 VAL GLU ALA GLY GLN GLY VAL HIS LEU LEU ASP ALA ASP SEQRES 26 B 344 GLY LYS GLU LEU ILE PRO ALA ALA ALA GLY TYR GLN HIS SEQRES 27 B 344 PHE GLY THR GLN ARG ASP HET ANP A 401 31 HET PG4 A 402 13 HET EDO A 403 4 HET MG A 404 1 HET MG A 405 1 HET MG A 406 1 HET ANP B 401 31 HET MG B 402 1 HET MG B 403 1 HET MG B 404 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 PG4 C8 H18 O5 FORMUL 5 EDO C2 H6 O2 FORMUL 6 MG 6(MG 2+) FORMUL 13 HOH *161(H2 O) HELIX 1 AA1 GLY A 24 ALA A 35 1 12 HELIX 2 AA2 ALA A 36 ALA A 40 5 5 HELIX 3 AA3 ASP A 82 ALA A 100 1 19 HELIX 4 AA4 ASP A 118 GLY A 137 1 20 HELIX 5 AA5 GLY A 184 LEU A 194 1 11 HELIX 6 AA6 PRO A 200 THR A 213 1 14 HELIX 7 AA7 GLN A 217 ARG A 225 1 9 HELIX 8 AA8 GLY A 237 GLY A 250 1 14 HELIX 9 AA9 GLN A 258 LEU A 260 5 3 HELIX 10 AB1 SER A 263 GLY A 268 1 6 HELIX 11 AB2 ALA A 271 ALA A 282 1 12 HELIX 12 AB3 PRO A 293 GLU A 295 5 3 HELIX 13 AB4 TYR A 296 TRP A 304 1 9 HELIX 14 AB5 GLY B 24 ALA B 35 1 12 HELIX 15 AB6 ALA B 36 ALA B 40 5 5 HELIX 16 AB7 ASP B 82 ALA B 100 1 19 HELIX 17 AB8 ASP B 118 GLY B 137 1 20 HELIX 18 AB9 GLY B 184 LEU B 194 1 11 HELIX 19 AC1 PRO B 200 THR B 213 1 14 HELIX 20 AC2 GLN B 217 LEU B 224 1 8 HELIX 21 AC3 GLY B 237 GLY B 250 1 14 HELIX 22 AC4 GLN B 258 LEU B 260 5 3 HELIX 23 AC5 SER B 263 LEU B 270 1 8 HELIX 24 AC6 ALA B 271 ALA B 282 1 12 HELIX 25 AC7 PRO B 293 GLU B 295 5 3 HELIX 26 AC8 TYR B 296 TRP B 304 1 9 SHEET 1 AA1 2 VAL A 45 LEU A 47 0 SHEET 2 AA1 2 LEU A 55 LEU A 56 -1 O LEU A 55 N LEU A 47 SHEET 1 AA2 4 GLN A 63 VAL A 72 0 SHEET 2 AA2 4 SER A 151 VAL A 160 -1 O GLY A 158 N ALA A 65 SHEET 3 AA2 4 ALA A 104 LEU A 114 -1 N ALA A 107 O PHE A 157 SHEET 4 AA2 4 ALA A 139 ARG A 147 1 O ASP A 144 N LEU A 112 SHEET 1 AA3 6 ALA A 230 ASP A 233 0 SHEET 2 AA3 6 LEU A 288 LEU A 292 -1 O THR A 291 N ALA A 230 SHEET 3 AA3 6 LEU A 176 VAL A 179 -1 N LEU A 176 O LEU A 292 SHEET 4 AA3 6 ALA A 308 GLU A 314 -1 O ILE A 310 N LEU A 177 SHEET 5 AA3 6 ALA A 252 GLU A 256 -1 N LEU A 254 O ARG A 312 SHEET 6 AA3 6 GLY A 318 LEU A 322 1 O HIS A 320 N VAL A 255 SHEET 1 AA4 2 VAL B 45 LEU B 47 0 SHEET 2 AA4 2 LEU B 55 LEU B 56 -1 O LEU B 55 N LEU B 47 SHEET 1 AA5 4 GLU B 62 VAL B 72 0 SHEET 2 AA5 4 SER B 151 PRO B 161 -1 O GLY B 158 N ALA B 65 SHEET 3 AA5 4 ALA B 104 LEU B 114 -1 N ALA B 107 O PHE B 157 SHEET 4 AA5 4 ALA B 139 ARG B 147 1 O ASP B 144 N LEU B 112 SHEET 1 AA6 6 ALA B 230 ASP B 233 0 SHEET 2 AA6 6 LEU B 288 LEU B 292 -1 O THR B 291 N ALA B 230 SHEET 3 AA6 6 LEU B 176 VAL B 179 -1 N LEU B 176 O LEU B 292 SHEET 4 AA6 6 ALA B 308 GLU B 314 -1 O ILE B 310 N LEU B 177 SHEET 5 AA6 6 ALA B 252 GLU B 256 -1 N LEU B 254 O ARG B 312 SHEET 6 AA6 6 GLY B 318 LEU B 322 1 O HIS B 320 N VAL B 255 LINK OD1 ASP A 52 MG MG A 404 1555 1555 1.93 LINK OD1 ASP A 69 MG MG A 406 1555 3655 2.63 LINK OD2 ASP A 69 MG MG A 406 1555 3655 2.44 LINK OD1 ASP A 97 MG MG A 404 1555 3655 2.13 LINK OD2 ASP A 97 MG MG A 406 1555 3655 2.14 LINK OD1 ASP A 144 MG MG A 405 1555 1555 2.06 LINK OD1 ASP A 233 MG MG A 404 1555 3655 2.03 LINK O2G ANP A 401 MG MG A 405 1555 1555 1.99 LINK O1B ANP A 401 MG MG A 405 1555 1555 2.28 LINK O2A ANP A 401 MG MG A 405 1555 1555 2.25 LINK O1G ANP A 401 MG MG A 406 1555 1555 1.83 LINK MG MG A 404 O HOH A 512 1555 3655 1.99 LINK MG MG A 404 O HOH A 519 1555 3655 2.24 LINK MG MG A 404 O HOH A 521 1555 1555 2.38 LINK MG MG A 405 O HOH A 510 1555 1555 2.37 LINK MG MG A 405 O HOH A 533 1555 1555 2.09 LINK MG MG A 406 O HOH A 506 1555 3655 2.37 LINK MG MG A 406 O HOH A 509 1555 1555 2.25 LINK OD1 ASP B 52 MG MG B 402 1555 4555 2.11 LINK OD1 ASP B 69 MG MG B 403 1555 1555 2.32 LINK OD2 ASP B 69 MG MG B 403 1555 1555 2.24 LINK OD1 ASP B 97 MG MG B 402 1555 1555 2.09 LINK OD2 ASP B 97 MG MG B 403 1555 1555 1.99 LINK OD1 ASP B 144 MG MG B 404 1555 4555 2.24 LINK OD1 ASP B 233 MG MG B 402 1555 1555 2.00 LINK O2G ANP B 401 MG MG B 403 1555 1555 1.88 LINK O1G ANP B 401 MG MG B 404 1555 1555 2.33 LINK O1B ANP B 401 MG MG B 404 1555 1555 2.09 LINK O2A ANP B 401 MG MG B 404 1555 1555 2.28 LINK MG MG B 402 O HOH B 518 1555 1555 2.28 LINK MG MG B 402 O HOH B 520 1555 1555 2.29 LINK MG MG B 402 O HOH B 531 1555 1555 2.21 LINK MG MG B 403 O HOH B 502 1555 1555 2.02 LINK MG MG B 403 O HOH B 512 1555 1555 2.14 LINK MG MG B 404 O HOH B 530 1555 4555 2.20 LINK MG MG B 404 O HOH B 561 1555 1555 2.38 CRYST1 112.820 115.800 132.470 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007549 0.00000 MTRIX1 1 0.001858 -0.999395 0.034723 57.51959 1 MTRIX2 1 -0.998020 -0.004036 -0.062766 58.50426 1 MTRIX3 1 0.062868 -0.034537 -0.997424 30.31197 1