HEADER ANTITUMOR PROTEIN 10-JAN-21 7DUN TITLE CRYSTAL STRUCTURE OF FAB FRAGMENT OF DARATUMUMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS CD38, DARATUMUMAB, MULTIPLE MYELOMA, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.J.YU,L.WANG,C.F.YU REVDAT 2 29-NOV-23 7DUN 1 REMARK REVDAT 1 10-MAR-21 7DUN 0 JRNL AUTH X.J.YU,L.WANG,C.F.YU JRNL TITL CRYSTAL STRUCTURE OF FAB FRAGMENT OF DARATUMUMAB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2500 - 3.8708 1.00 5149 155 0.1857 0.1975 REMARK 3 2 3.8708 - 3.0732 1.00 4868 147 0.1796 0.1838 REMARK 3 3 3.0732 - 2.6850 1.00 4788 145 0.2119 0.2789 REMARK 3 4 2.6850 - 2.4396 1.00 4760 144 0.2269 0.2195 REMARK 3 5 2.4396 - 2.2648 1.00 4733 143 0.2214 0.2165 REMARK 3 6 2.2648 - 2.1313 1.00 4730 143 0.2155 0.2364 REMARK 3 7 2.1313 - 2.0246 1.00 4694 142 0.2147 0.2399 REMARK 3 8 2.0246 - 1.9365 1.00 4705 142 0.2133 0.2203 REMARK 3 9 1.9365 - 1.8619 1.00 4671 141 0.2180 0.2205 REMARK 3 10 1.8619 - 1.7977 1.00 4643 140 0.2199 0.2115 REMARK 3 11 1.7977 - 1.7415 1.00 4678 141 0.2228 0.2483 REMARK 3 12 1.7415 - 1.6917 1.00 4645 141 0.2328 0.2293 REMARK 3 13 1.6917 - 1.6472 1.00 4680 141 0.2459 0.2723 REMARK 3 14 1.6472 - 1.6070 0.97 4468 135 0.2686 0.2688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5101 49.9871 90.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1330 REMARK 3 T33: 0.1451 T12: 0.0060 REMARK 3 T13: 0.0145 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.7087 L22: 1.6858 REMARK 3 L33: 1.4671 L12: -0.7658 REMARK 3 L13: -0.4343 L23: 0.1636 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0097 S13: -0.0256 REMARK 3 S21: -0.0138 S22: -0.0291 S23: 0.0036 REMARK 3 S31: -0.0137 S32: 0.0316 S33: 0.0540 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 121 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6842 20.5487 102.8842 REMARK 3 T TENSOR REMARK 3 T11: 0.5197 T22: 0.3825 REMARK 3 T33: 0.4958 T12: -0.0189 REMARK 3 T13: 0.1662 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.6709 L22: 0.7018 REMARK 3 L33: 0.5490 L12: -0.0529 REMARK 3 L13: 0.0635 L23: -0.1390 REMARK 3 S TENSOR REMARK 3 S11: -0.3128 S12: -0.2422 S13: -0.8953 REMARK 3 S21: 0.1147 S22: -0.0334 S23: -0.2238 REMARK 3 S31: 0.4983 S32: -0.1210 S33: 0.3674 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 144 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9906 25.3825 100.3158 REMARK 3 T TENSOR REMARK 3 T11: 0.4468 T22: 0.2976 REMARK 3 T33: 0.3708 T12: -0.0699 REMARK 3 T13: 0.1327 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 1.9767 L22: 0.8497 REMARK 3 L33: 1.3182 L12: 0.0046 REMARK 3 L13: -0.6465 L23: -0.2495 REMARK 3 S TENSOR REMARK 3 S11: -0.2661 S12: 0.2892 S13: -0.5229 REMARK 3 S21: -0.3197 S22: 0.0164 S23: -0.1152 REMARK 3 S31: 0.5158 S32: -0.2190 S33: 0.1894 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5616 57.8849 114.5684 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.1659 REMARK 3 T33: 0.1469 T12: 0.0009 REMARK 3 T13: 0.0089 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.0893 L22: 0.2491 REMARK 3 L33: 1.1729 L12: -0.3320 REMARK 3 L13: -1.3096 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.1869 S13: 0.0913 REMARK 3 S21: 0.1270 S22: -0.0570 S23: -0.0141 REMARK 3 S31: 0.0418 S32: 0.1711 S33: -0.0837 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 26 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1253 60.6784 102.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1426 REMARK 3 T33: 0.1450 T12: 0.0066 REMARK 3 T13: 0.0197 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.7162 L22: 0.8840 REMARK 3 L33: 1.7579 L12: -0.0164 REMARK 3 L13: -0.4039 L23: 0.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.0836 S13: 0.0968 REMARK 3 S21: -0.1710 S22: 0.0429 S23: -0.0228 REMARK 3 S31: -0.1461 S32: -0.1437 S33: -0.0515 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2949 65.4834 110.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.1720 REMARK 3 T33: 0.1939 T12: 0.0105 REMARK 3 T13: 0.0203 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.8316 L22: 1.9509 REMARK 3 L33: 0.6353 L12: 2.6597 REMARK 3 L13: -0.6776 L23: -0.3379 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.2261 S13: 0.3616 REMARK 3 S21: 0.0276 S22: -0.0709 S23: 0.0712 REMARK 3 S31: -0.2869 S32: 0.0883 S33: -0.1104 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3256 54.1586 107.9726 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1112 REMARK 3 T33: 0.1427 T12: -0.0034 REMARK 3 T13: 0.0152 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.7852 L22: 1.4450 REMARK 3 L33: 2.3894 L12: -0.1574 REMARK 3 L13: -1.4031 L23: -0.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: 0.0087 S13: -0.1389 REMARK 3 S21: 0.0058 S22: -0.0135 S23: 0.0757 REMARK 3 S31: 0.0955 S32: -0.0740 S33: 0.0157 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8589 60.3630 102.1006 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1762 REMARK 3 T33: 0.1934 T12: -0.0208 REMARK 3 T13: 0.0337 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6518 L22: 1.3112 REMARK 3 L33: 2.4482 L12: 0.0988 REMARK 3 L13: -1.4746 L23: -0.5313 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.1665 S13: 0.0580 REMARK 3 S21: -0.1148 S22: -0.0819 S23: -0.3865 REMARK 3 S31: -0.0067 S32: 0.3270 S33: 0.0386 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 102 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8030 37.6568 116.5683 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.1628 REMARK 3 T33: 0.2239 T12: -0.0164 REMARK 3 T13: 0.0313 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.6702 L22: 0.5119 REMARK 3 L33: 0.7571 L12: 0.3721 REMARK 3 L13: -0.4389 L23: -0.6374 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.1090 S13: -0.1912 REMARK 3 S21: -0.0500 S22: -0.0917 S23: -0.0156 REMARK 3 S31: 0.0981 S32: -0.0222 S33: 0.0895 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 119 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4588 22.4880 114.6498 REMARK 3 T TENSOR REMARK 3 T11: 0.3849 T22: 0.2290 REMARK 3 T33: 0.3939 T12: 0.0030 REMARK 3 T13: 0.1014 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.4295 L22: 1.4355 REMARK 3 L33: 0.6533 L12: -0.9411 REMARK 3 L13: -0.5143 L23: -0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: -0.0634 S13: -0.3598 REMARK 3 S21: -0.3568 S22: 0.0058 S23: -0.3003 REMARK 3 S31: 0.3396 S32: 0.2164 S33: 0.1551 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0986 21.3428 120.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.3824 T22: 0.4357 REMARK 3 T33: 0.5200 T12: 0.0595 REMARK 3 T13: 0.0476 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 0.0114 L22: 1.6940 REMARK 3 L33: 1.3050 L12: 0.0432 REMARK 3 L13: -0.0732 L23: -1.3901 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.3783 S13: -0.3879 REMARK 3 S21: 0.1346 S22: 0.0604 S23: -0.3617 REMARK 3 S31: 0.2306 S32: 0.1903 S33: 0.2497 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2348 23.6748 115.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.3650 T22: 0.2082 REMARK 3 T33: 0.3547 T12: 0.0173 REMARK 3 T13: 0.0945 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 0.9507 L22: 1.4821 REMARK 3 L33: 0.8382 L12: -0.4390 REMARK 3 L13: -0.4964 L23: 0.3770 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.0925 S13: -0.3145 REMARK 3 S21: -0.3088 S22: -0.0098 S23: -0.2733 REMARK 3 S31: 0.4061 S32: 0.1560 S33: 0.1641 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 198 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2666 22.6560 123.1823 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: 0.2286 REMARK 3 T33: 0.3346 T12: -0.0546 REMARK 3 T13: 0.0381 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 1.4642 L22: 2.0431 REMARK 3 L33: 1.6034 L12: -1.0567 REMARK 3 L13: -0.6429 L23: 0.7019 REMARK 3 S TENSOR REMARK 3 S11: -0.1170 S12: -0.1312 S13: -0.4794 REMARK 3 S21: -0.0532 S22: 0.0476 S23: -0.0287 REMARK 3 S31: 0.4142 S32: -0.0621 S33: 0.2524 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4CMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM PHOSPHATE MONOBASIC, REMARK 280 20% W/V POLYETHYLENE GLYCOL 3350, EVAPORATION, RECRYSTALLIZATION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.98467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.49233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.73850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.24617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 181.23083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.98467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.49233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.24617 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.73850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 181.23083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 138 REMARK 465 SER H 139 REMARK 465 THR H 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 375 O HOH H 502 1.73 REMARK 500 O HOH H 313 O HOH H 436 1.82 REMARK 500 O HOH L 312 O HOH L 482 1.86 REMARK 500 O HOH H 302 O HOH H 411 1.89 REMARK 500 O HOH L 511 O HOH L 534 1.91 REMARK 500 O HOH L 358 O HOH L 380 1.94 REMARK 500 O HOH L 322 O HOH L 349 2.00 REMARK 500 O HOH L 331 O HOH L 497 2.00 REMARK 500 O HOH H 471 O HOH H 486 2.02 REMARK 500 O SER H 137 O HOH H 301 2.06 REMARK 500 OD1 ASP L 70 O HOH L 301 2.06 REMARK 500 O HOH H 491 O HOH H 497 2.07 REMARK 500 O HOH H 322 O HOH H 430 2.08 REMARK 500 O HOH H 399 O HOH H 466 2.10 REMARK 500 O HOH L 475 O HOH L 526 2.11 REMARK 500 O HOH H 460 O HOH H 478 2.12 REMARK 500 O HOH H 538 O HOH H 547 2.13 REMARK 500 O HOH L 567 O HOH L 571 2.13 REMARK 500 O HOH L 520 O HOH L 558 2.13 REMARK 500 OG SER L 31 O HOH L 302 2.15 REMARK 500 O HOH L 400 O HOH L 536 2.18 REMARK 500 NZ LYS L 207 O HOH L 303 2.18 REMARK 500 OG SER L 168 O HOH L 304 2.19 REMARK 500 O HOH H 412 O HOH H 485 2.19 REMARK 500 O HOH L 311 O HOH L 507 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 441 O HOH H 540 8666 2.04 REMARK 500 O HOH H 345 O HOH L 549 6654 2.09 REMARK 500 O HOH H 463 O HOH L 335 6654 2.09 REMARK 500 O HOH H 450 O HOH L 427 8666 2.10 REMARK 500 O HOH H 505 O HOH L 501 8666 2.15 REMARK 500 O HOH H 399 O HOH L 519 12565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP H 103 -170.07 75.45 REMARK 500 ASP H 153 65.99 62.33 REMARK 500 SER L 30 -120.89 51.14 REMARK 500 SER L 30 -122.08 53.01 REMARK 500 ALA L 51 -45.81 77.43 REMARK 500 ALA L 84 171.22 178.67 REMARK 500 LYS L 126 46.92 -78.22 REMARK 500 SER L 127 -11.39 -153.33 REMARK 500 ASN L 138 69.83 60.34 REMARK 500 LYS L 190 -61.88 -109.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 549 DISTANCE = 6.33 ANGSTROMS DBREF 7DUN H 1 223 PDB 7DUN 7DUN 1 223 DBREF 7DUN L 1 212 PDB 7DUN 7DUN 1 212 SEQRES 1 H 223 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 223 PRO GLY GLY SER LEU ARG LEU SER CYS ALA VAL SER GLY SEQRES 3 H 223 PHE THR PHE ASN SER PHE ALA MET SER TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 H 223 GLY SER GLY GLY GLY THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 223 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 223 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 223 ALA VAL TYR PHE CYS ALA LYS ASP LYS ILE LEU TRP PHE SEQRES 9 H 223 GLY GLU PRO VAL PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 223 PRO LYS SEQRES 1 L 212 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 212 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 212 GLN SER VAL SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 212 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 212 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 212 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN ARG SEQRES 8 L 212 SER ASN TRP PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 212 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 212 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 212 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 212 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 212 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 212 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 212 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 212 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 212 PHE ASN ARG GLY FORMUL 3 HOH *520(H2 O) HELIX 1 AA1 THR H 28 PHE H 32 5 5 HELIX 2 AA2 ASN H 74 LYS H 76 5 3 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 165 ALA H 167 5 3 HELIX 5 AA5 SER H 196 THR H 200 5 5 HELIX 6 AA6 LYS H 210 ASN H 213 5 4 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N LEU H 5 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 AA2 6 ALA H 92 ASP H 99 -1 N ALA H 92 O VAL H 118 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O TYR H 59 N ALA H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 AA3 4 ALA H 92 ASP H 99 -1 N ALA H 92 O VAL H 118 SHEET 4 AA3 4 PHE H 109 TRP H 112 -1 O TYR H 111 N LYS H 98 SHEET 1 AA4 4 SER H 129 LEU H 133 0 SHEET 2 AA4 4 THR H 144 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 AA4 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 AA4 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA5 4 SER H 129 LEU H 133 0 SHEET 2 AA5 4 THR H 144 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 AA5 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 AA5 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA6 3 THR H 160 TRP H 163 0 SHEET 2 AA6 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA6 3 THR H 214 ARG H 219 -1 O THR H 214 N HIS H 209 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 SER H 54 GLY H 55 0 -12.94 CISPEP 2 PHE H 155 PRO H 156 0 -5.27 CISPEP 3 GLU H 157 PRO H 158 0 -2.04 CISPEP 4 SER L 7 PRO L 8 0 -7.64 CISPEP 5 TRP L 94 PRO L 95 0 -1.62 CISPEP 6 TYR L 140 PRO L 141 0 1.92 CRYST1 89.905 89.905 217.477 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011123 0.006422 0.000000 0.00000 SCALE2 0.000000 0.012844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004598 0.00000