HEADER IMMUNE SYSTEM 11-JAN-21 7DUU TITLE CRYSTAL STRUCTURE OF HLA MOLECULE WITH AN KIR RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HLA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LEU-ASN-PRO-SER-VAL-ALA-ALA-THR-LEU; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DS2; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: CD158 ANTIGEN-LIKE FAMILY MEMBER J,MHC CLASS I NK CELL COMPND 18 RECEPTOR,NK RECEPTOR 183 ACTI,NATURAL KILLER-ASSOCIATED TRANSCRIPT 5, COMPND 19 NKAT-5,P58 NATURAL KILLER CELL RECEPTOR CLONE CL-49,P58 NK RECEPTOR COMPND 20 CL-49; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HEPACIVIRUS C; SOURCE 17 ORGANISM_TAXID: 11103; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 GENE: KIR2DS2, CD158J, NKAT5; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS HLA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.YANG,L.YIN REVDAT 3 29-NOV-23 7DUU 1 REMARK REVDAT 2 23-FEB-22 7DUU 1 JRNL REVDAT 1 02-FEB-22 7DUU 0 JRNL AUTH Y.YANG,H.BAI,Y.WU,P.CHEN,J.ZHOU,J.LEI,X.YE,A.J.BROWN,X.ZHOU, JRNL AUTH 2 T.SHU,Y.CHEN,P.WEI,L.YIN JRNL TITL ACTIVATING RECEPTOR KIR2DS2 BOUND TO HLA-C1 REVEALS THE JRNL TITL 2 NOVEL RECOGNITION FEATURES OF ACTIVATING RECEPTOR. JRNL REF IMMUNOLOGY V. 165 341 2022 JRNL REFN ESSN 1365-2567 JRNL PMID 34967442 JRNL DOI 10.1111/IMM.13439 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3900 - 6.0400 0.97 2731 150 0.1993 0.2166 REMARK 3 2 6.0400 - 4.7900 1.00 2686 145 0.1892 0.2333 REMARK 3 3 4.7900 - 4.1900 1.00 2672 146 0.1616 0.2083 REMARK 3 4 4.1900 - 3.8100 1.00 2643 144 0.1802 0.2321 REMARK 3 5 3.8100 - 3.5300 1.00 2625 143 0.1923 0.2335 REMARK 3 6 3.5300 - 3.3200 1.00 2648 144 0.2113 0.2580 REMARK 3 7 3.3200 - 3.1600 1.00 2606 141 0.2207 0.3026 REMARK 3 8 3.1600 - 3.0200 1.00 2625 143 0.2263 0.3129 REMARK 3 9 3.0200 - 2.9000 1.00 2616 142 0.2257 0.2930 REMARK 3 10 2.9000 - 2.8000 1.00 2613 143 0.2362 0.2766 REMARK 3 11 2.8000 - 2.7200 0.99 2558 138 0.2307 0.2504 REMARK 3 12 2.7200 - 2.6400 0.99 2578 140 0.2206 0.2629 REMARK 3 13 2.6400 - 2.5700 0.99 2582 140 0.2320 0.2567 REMARK 3 14 2.5700 - 2.5100 0.97 2526 138 0.2562 0.2973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -38.3090 -53.6489 -20.0788 REMARK 3 T TENSOR REMARK 3 T11: 0.3279 T22: 0.2251 REMARK 3 T33: 0.2939 T12: -0.0156 REMARK 3 T13: 0.0156 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 1.5188 L22: 0.6894 REMARK 3 L33: 1.7456 L12: -0.1826 REMARK 3 L13: 0.4200 L23: -0.1174 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.1223 S13: 0.0226 REMARK 3 S21: -0.1643 S22: 0.0294 S23: -0.0237 REMARK 3 S31: -0.1140 S32: -0.0038 S33: -0.0169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 87 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 44.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M4K ,4NT6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 25% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.02800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.98100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.77800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.02800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.98100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.77800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.02800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.98100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.77800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.02800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.98100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.77800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 352 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS D 1 REMARK 465 GLY D 143 REMARK 465 GLU D 144 REMARK 465 ALA D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 101 CB CYS A 101 SG -0.151 REMARK 500 GLY D 15 C PRO D 16 N 0.132 REMARK 500 GLY D 115 C PRO D 116 N 0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 101 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 HIS B 31 N - CA - CB ANGL. DEV. = 13.5 DEGREES REMARK 500 PRO D 16 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 PRO D 16 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO D 68 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO D 68 CA - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 PRO D 116 C - N - CA ANGL. DEV. = 13.2 DEGREES REMARK 500 PRO D 116 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 35.48 -86.39 REMARK 500 ASP A 29 -122.90 53.34 REMARK 500 ASP A 114 102.20 -160.62 REMARK 500 SER A 195 -150.77 -163.21 REMARK 500 TYR A 209 -64.70 -97.60 REMARK 500 HIS B 31 -61.25 -98.16 REMARK 500 TRP B 60 -4.12 81.65 REMARK 500 PRO C 3 44.02 -65.56 REMARK 500 SER C 4 -150.47 56.57 REMARK 500 PRO D 68 82.88 33.79 REMARK 500 SER D 86 -96.47 -79.88 REMARK 500 PRO D 114 30.48 -92.45 REMARK 500 LYS D 155 76.66 34.10 REMARK 500 THR D 170 -72.59 -96.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY D 67 -15.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DUU A 2 274 UNP F6IQA6 F6IQA6_HUMAN 26 298 DBREF 7DUU B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7DUU C 1 9 PDB 7DUU 7DUU 1 9 DBREF 7DUU D 1 200 UNP P43631 KI2S2_HUMAN 22 221 SEQADV 7DUU MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 273 SER HIS SER MET LYS TYR PHE PHE THR SER VAL SER ARG SEQRES 2 A 273 PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY TYR SEQRES 3 A 273 VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP ALA SEQRES 4 A 273 ALA SER PRO ARG GLY GLU PRO ARG ALA PRO TRP VAL GLU SEQRES 5 A 273 GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN LYS SEQRES 6 A 273 TYR LYS ARG GLN ALA GLN THR ASP ARG VAL SER LEU ARG SEQRES 7 A 273 ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SER SEQRES 8 A 273 HIS THR LEU GLN TRP MET CYS GLY CYS ASP LEU GLY PRO SEQRES 9 A 273 ASP GLY ARG LEU LEU ARG GLY TYR ASP GLN TYR ALA TYR SEQRES 10 A 273 ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU ARG SEQRES 11 A 273 SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR GLN SEQRES 12 A 273 ARG LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN ARG ARG SEQRES 13 A 273 ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG ARG SEQRES 14 A 273 TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA GLU SEQRES 15 A 273 HIS PRO LYS THR HIS VAL THR HIS HIS PRO VAL SER ASP SEQRES 16 A 273 HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE TYR SEQRES 17 A 273 PRO ALA GLU ILE THR LEU THR TRP GLN TRP ASP GLY GLU SEQRES 18 A 273 ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG PRO SEQRES 19 A 273 ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL MET SEQRES 20 A 273 VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS VAL SEQRES 21 A 273 GLN HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG TRP SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LEU ASN PRO SER VAL ALA ALA THR LEU SEQRES 1 D 200 HIS GLU GLY VAL HIS ARG LYS PRO SER LEU LEU ALA HIS SEQRES 2 D 200 PRO GLY PRO LEU VAL LYS SER GLU GLU THR VAL ILE LEU SEQRES 3 D 200 GLN CYS TRP SER ASP VAL ARG PHE GLU HIS PHE LEU LEU SEQRES 4 D 200 HIS ARG GLU GLY LYS TYR LYS ASP THR LEU HIS LEU ILE SEQRES 5 D 200 GLY GLU HIS HIS ASP GLY VAL SER LYS ALA ASN PHE SER SEQRES 6 D 200 ILE GLY PRO MET MET GLN ASP LEU ALA GLY THR TYR ARG SEQRES 7 D 200 CYS TYR GLY SER VAL THR HIS SER PRO TYR GLN LEU SER SEQRES 8 D 200 ALA PRO SER ASP PRO LEU ASP ILE VAL ILE THR GLY LEU SEQRES 9 D 200 TYR GLU LYS PRO SER LEU SER ALA GLN PRO GLY PRO THR SEQRES 10 D 200 VAL LEU ALA GLY GLU SER VAL THR LEU SER CYS SER SER SEQRES 11 D 200 ARG SER SER TYR ASP MET TYR HIS LEU SER ARG GLU GLY SEQRES 12 D 200 GLU ALA HIS GLU ARG ARG PHE SER ALA GLY PRO LYS VAL SEQRES 13 D 200 ASN GLY THR PHE GLN ALA ASP PHE PRO LEU GLY PRO ALA SEQRES 14 D 200 THR HIS GLY GLY THR TYR ARG CYS PHE GLY SER PHE ARG SEQRES 15 D 200 ASP SER PRO TYR GLU TRP SER ASN SER SER ASP PRO LEU SEQRES 16 D 200 LEU VAL SER VAL THR FORMUL 5 HOH *127(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ARG A 151 1 15 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 MET D 70 ALA D 74 5 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 4 AA1 8 SER A 4 VAL A 12 -1 N THR A 10 O ILE A 23 SHEET 5 AA1 8 THR A 94 ASP A 102 -1 O CYS A 99 N TYR A 7 SHEET 6 AA1 8 ARG A 111 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O LEU A 126 N ASP A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 TRP A 219 -1 N TRP A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 4 SER D 9 HIS D 13 0 SHEET 2 AA8 4 VAL D 24 SER D 30 -1 O TRP D 29 N SER D 9 SHEET 3 AA8 4 SER D 60 ILE D 66 -1 O PHE D 64 N LEU D 26 SHEET 4 AA8 4 GLU D 54 HIS D 55 -1 N GLU D 54 O LYS D 61 SHEET 1 AA9 5 LEU D 17 LYS D 19 0 SHEET 2 AA9 5 LEU D 97 THR D 102 1 O VAL D 100 N VAL D 18 SHEET 3 AA9 5 GLY D 75 SER D 82 -1 N TYR D 77 O LEU D 97 SHEET 4 AA9 5 HIS D 36 ARG D 41 -1 N HIS D 40 O ARG D 78 SHEET 5 AA9 5 ASP D 47 ILE D 52 -1 O LEU D 51 N PHE D 37 SHEET 1 AB1 4 SER D 109 ALA D 112 0 SHEET 2 AB1 4 SER D 123 SER D 130 -1 O SER D 129 N SER D 109 SHEET 3 AB1 4 THR D 159 PRO D 168 -1 O PHE D 164 N LEU D 126 SHEET 4 AB1 4 GLY D 153 VAL D 156 -1 N VAL D 156 O THR D 159 SHEET 1 AB2 5 THR D 117 VAL D 118 0 SHEET 2 AB2 5 LEU D 195 VAL D 199 1 O SER D 198 N VAL D 118 SHEET 3 AB2 5 GLY D 173 PHE D 181 -1 N TYR D 175 O LEU D 195 SHEET 4 AB2 5 MET D 136 ARG D 141 -1 N HIS D 138 O PHE D 178 SHEET 5 AB2 5 ARG D 148 SER D 151 -1 O ARG D 148 N LEU D 139 SHEET 1 AB3 4 THR D 117 VAL D 118 0 SHEET 2 AB3 4 LEU D 195 VAL D 199 1 O SER D 198 N VAL D 118 SHEET 3 AB3 4 GLY D 173 PHE D 181 -1 N TYR D 175 O LEU D 195 SHEET 4 AB3 4 SER D 184 TRP D 188 -1 O SER D 184 N PHE D 181 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 28 CYS D 79 1555 1555 2.02 SSBOND 5 CYS D 128 CYS D 177 1555 1555 2.03 CISPEP 1 HIS D 13 PRO D 14 0 16.31 CRYST1 82.056 153.962 177.556 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012187 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005632 0.00000