data_7DVF # _entry.id 7DVF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DVF pdb_00007dvf 10.2210/pdb7dvf/pdb WWPDB D_1300020170 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DVF _pdbx_database_status.recvd_initial_deposition_date 2021-01-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yagi, S.' 1 ? 'Tagami, S.' 2 ? 'Padhi, A.K.' 3 ? 'Zhang, K.Y.J.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 143 _citation.language ? _citation.page_first 15998 _citation.page_last 16006 _citation.title 'Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.1c05367 _citation.pdbx_database_id_PubMed 34559526 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yagi, S.' 1 ? primary 'Padhi, A.K.' 2 ? primary 'Vucinic, J.' 3 ? primary 'Barbe, S.' 4 ? primary 'Schiex, T.' 5 ? primary 'Nakagawa, R.' 6 0000-0002-6178-2945 primary 'Simoncini, D.' 7 ? primary 'Zhang, K.Y.J.' 8 0000-0002-9282-8045 primary 'Tagami, S.' 9 0000-0002-1720-3627 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7DVF _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.280 _cell.length_a_esd ? _cell.length_b 33.536 _cell.length_b_esd ? _cell.length_c 79.184 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'reDPBB_sym2 protein' 9418.103 1 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 3 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPPMKLRVMEAYPEDVGKGIVRMDKASREKLGVSAGDLVEIKGSKTPMKLRVMEAYPEDVGKGIVRMDKASREKLGVSAG DLVEIKG ; _entity_poly.pdbx_seq_one_letter_code_can ;GPPMKLRVMEAYPEDVGKGIVRMDKASREKLGVSAGDLVEIKGSKTPMKLRVMEAYPEDVGKGIVRMDKASREKLGVSAG DLVEIKG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 PRO n 1 4 MET n 1 5 LYS n 1 6 LEU n 1 7 ARG n 1 8 VAL n 1 9 MET n 1 10 GLU n 1 11 ALA n 1 12 TYR n 1 13 PRO n 1 14 GLU n 1 15 ASP n 1 16 VAL n 1 17 GLY n 1 18 LYS n 1 19 GLY n 1 20 ILE n 1 21 VAL n 1 22 ARG n 1 23 MET n 1 24 ASP n 1 25 LYS n 1 26 ALA n 1 27 SER n 1 28 ARG n 1 29 GLU n 1 30 LYS n 1 31 LEU n 1 32 GLY n 1 33 VAL n 1 34 SER n 1 35 ALA n 1 36 GLY n 1 37 ASP n 1 38 LEU n 1 39 VAL n 1 40 GLU n 1 41 ILE n 1 42 LYS n 1 43 GLY n 1 44 SER n 1 45 LYS n 1 46 THR n 1 47 PRO n 1 48 MET n 1 49 LYS n 1 50 LEU n 1 51 ARG n 1 52 VAL n 1 53 MET n 1 54 GLU n 1 55 ALA n 1 56 TYR n 1 57 PRO n 1 58 GLU n 1 59 ASP n 1 60 VAL n 1 61 GLY n 1 62 LYS n 1 63 GLY n 1 64 ILE n 1 65 VAL n 1 66 ARG n 1 67 MET n 1 68 ASP n 1 69 LYS n 1 70 ALA n 1 71 SER n 1 72 ARG n 1 73 GLU n 1 74 LYS n 1 75 LEU n 1 76 GLY n 1 77 VAL n 1 78 SER n 1 79 ALA n 1 80 GLY n 1 81 ASP n 1 82 LEU n 1 83 VAL n 1 84 GLU n 1 85 ILE n 1 86 LYS n 1 87 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 87 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7DVF _struct_ref.pdbx_db_accession 7DVF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7DVF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 87 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7DVF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 87 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 87 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DVF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 33.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM Sodium acetate pH6.2, 35% MPD, 20% PEG1500' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-04-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7DVF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.2 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21779 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 29.03 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.21 _reflns_shell.d_res_low 1.28 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2768 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.995 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 85.930 _refine.B_iso_mean 22.1422 _refine.B_iso_min 4.130 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DVF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2090 _refine.ls_d_res_low 21.8960 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21775 _refine.ls_number_reflns_R_free 2000 _refine.ls_number_reflns_R_work 19775 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.2400 _refine.ls_percent_reflns_R_free 9.1800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1573 _refine.ls_R_factor_R_free 0.1953 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1536 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.470 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7DU6 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.3600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.2090 _refine_hist.d_res_low 21.8960 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 772 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 84 _refine_hist.pdbx_B_iso_mean_ligand 22.95 _refine_hist.pdbx_B_iso_mean_solvent 38.75 _refine_hist.pdbx_number_atoms_protein 642 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.2090 1.2392 . . 130 1278 91.0000 . . . 0.2824 0.0000 0.2670 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2392 1.2727 . . 139 1377 98.0000 . . . 0.2765 0.0000 0.2672 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2727 1.3101 . . 143 1420 100.0000 . . . 0.2453 0.0000 0.2629 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3101 1.3524 . . 143 1400 100.0000 . . . 0.1974 0.0000 0.1621 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3524 1.4008 . . 144 1429 100.0000 . . . 0.1913 0.0000 0.1373 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4008 1.4568 . . 144 1426 100.0000 . . . 0.2034 0.0000 0.1461 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4568 1.5231 . . 144 1422 100.0000 . . . 0.2047 0.0000 0.1498 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5231 1.6034 . . 142 1411 100.0000 . . . 0.1604 0.0000 0.1239 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6034 1.7038 . . 144 1426 100.0000 . . . 0.1681 0.0000 0.1335 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7038 1.8353 . . 146 1446 100.0000 . . . 0.1668 0.0000 0.1361 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8353 2.0199 . . 146 1444 100.0000 . . . 0.1859 0.0000 0.1393 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0199 2.3119 . . 147 1449 100.0000 . . . 0.1601 0.0000 0.1331 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3119 2.9117 . . 149 1477 100.0000 . . . 0.2014 0.0000 0.1540 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9117 21.8960 . . 139 1370 87.0000 . . . 0.2268 0.0000 0.1675 . . . . . . . . . . . # _struct.entry_id 7DVF _struct.title 'Crystal structure of the computationally designed reDPBB_sym2 protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DVF _struct_keywords.text 'Double psi beta barrel, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 12 ? VAL A 16 ? TYR A 12 VAL A 16 5 ? 5 HELX_P HELX_P2 AA2 ASP A 24 ? GLY A 32 ? ASP A 24 GLY A 32 1 ? 9 HELX_P HELX_P3 AA3 TYR A 56 ? VAL A 60 ? TYR A 56 VAL A 60 5 ? 5 HELX_P HELX_P4 AA4 ASP A 68 ? GLY A 76 ? ASP A 68 GLY A 76 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 4 ? GLU A 10 ? MET A 4 GLU A 10 AA1 2 ILE A 64 ? MET A 67 ? ILE A 64 MET A 67 AA1 3 ILE A 20 ? ARG A 22 ? ILE A 20 ARG A 22 AA1 4 MET A 48 ? MET A 53 ? MET A 48 MET A 53 AA1 5 LEU A 38 ? LYS A 42 ? LEU A 38 LYS A 42 AA1 6 LEU A 82 ? LYS A 86 ? LEU A 82 LYS A 86 AA1 7 MET A 4 ? GLU A 10 ? MET A 4 GLU A 10 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N MET A 9 ? N MET A 9 O VAL A 65 ? O VAL A 65 AA1 2 3 O ARG A 66 ? O ARG A 66 N ARG A 22 ? N ARG A 22 AA1 3 4 N VAL A 21 ? N VAL A 21 O MET A 53 ? O MET A 53 AA1 4 5 O MET A 48 ? O MET A 48 N ILE A 41 ? N ILE A 41 AA1 5 6 N GLU A 40 ? N GLU A 40 O LYS A 86 ? O LYS A 86 AA1 6 7 O ILE A 85 ? O ILE A 85 N MET A 4 ? N MET A 4 # _atom_sites.entry_id 7DVF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.038052 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029819 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012629 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 MET 9 9 9 MET MET A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLY 87 87 87 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD 1 101 507 MPD MPD A . C 3 HOH 1 201 119 HOH HOH A . C 3 HOH 2 202 86 HOH HOH A . C 3 HOH 3 203 65 HOH HOH A . C 3 HOH 4 204 28 HOH HOH A . C 3 HOH 5 205 39 HOH HOH A . C 3 HOH 6 206 115 HOH HOH A . C 3 HOH 7 207 63 HOH HOH A . C 3 HOH 8 208 112 HOH HOH A . C 3 HOH 9 209 116 HOH HOH A . C 3 HOH 10 210 55 HOH HOH A . C 3 HOH 11 211 69 HOH HOH A . C 3 HOH 12 212 95 HOH HOH A . C 3 HOH 13 213 49 HOH HOH A . C 3 HOH 14 214 6 HOH HOH A . C 3 HOH 15 215 1 HOH HOH A . C 3 HOH 16 216 66 HOH HOH A . C 3 HOH 17 217 70 HOH HOH A . C 3 HOH 18 218 34 HOH HOH A . C 3 HOH 19 219 15 HOH HOH A . C 3 HOH 20 220 3 HOH HOH A . C 3 HOH 21 221 20 HOH HOH A . C 3 HOH 22 222 12 HOH HOH A . C 3 HOH 23 223 9 HOH HOH A . C 3 HOH 24 224 16 HOH HOH A . C 3 HOH 25 225 50 HOH HOH A . C 3 HOH 26 226 75 HOH HOH A . C 3 HOH 27 227 2 HOH HOH A . C 3 HOH 28 228 59 HOH HOH A . C 3 HOH 29 229 21 HOH HOH A . C 3 HOH 30 230 4 HOH HOH A . C 3 HOH 31 231 17 HOH HOH A . C 3 HOH 32 232 7 HOH HOH A . C 3 HOH 33 233 32 HOH HOH A . C 3 HOH 34 234 117 HOH HOH A . C 3 HOH 35 235 22 HOH HOH A . C 3 HOH 36 236 89 HOH HOH A . C 3 HOH 37 237 77 HOH HOH A . C 3 HOH 38 238 48 HOH HOH A . C 3 HOH 39 239 52 HOH HOH A . C 3 HOH 40 240 33 HOH HOH A . C 3 HOH 41 241 67 HOH HOH A . C 3 HOH 42 242 61 HOH HOH A . C 3 HOH 43 243 19 HOH HOH A . C 3 HOH 44 244 41 HOH HOH A . C 3 HOH 45 245 25 HOH HOH A . C 3 HOH 46 246 42 HOH HOH A . C 3 HOH 47 247 47 HOH HOH A . C 3 HOH 48 248 8 HOH HOH A . C 3 HOH 49 249 64 HOH HOH A . C 3 HOH 50 250 38 HOH HOH A . C 3 HOH 51 251 73 HOH HOH A . C 3 HOH 52 252 40 HOH HOH A . C 3 HOH 53 253 44 HOH HOH A . C 3 HOH 54 254 53 HOH HOH A . C 3 HOH 55 255 27 HOH HOH A . C 3 HOH 56 256 35 HOH HOH A . C 3 HOH 57 257 10 HOH HOH A . C 3 HOH 58 258 45 HOH HOH A . C 3 HOH 59 259 60 HOH HOH A . C 3 HOH 60 260 31 HOH HOH A . C 3 HOH 61 261 91 HOH HOH A . C 3 HOH 62 262 36 HOH HOH A . C 3 HOH 63 263 124 HOH HOH A . C 3 HOH 64 264 114 HOH HOH A . C 3 HOH 65 265 23 HOH HOH A . C 3 HOH 66 266 18 HOH HOH A . C 3 HOH 67 267 30 HOH HOH A . C 3 HOH 68 268 11 HOH HOH A . C 3 HOH 69 269 37 HOH HOH A . C 3 HOH 70 270 107 HOH HOH A . C 3 HOH 71 271 14 HOH HOH A . C 3 HOH 72 272 29 HOH HOH A . C 3 HOH 73 273 102 HOH HOH A . C 3 HOH 74 274 58 HOH HOH A . C 3 HOH 75 275 125 HOH HOH A . C 3 HOH 76 276 109 HOH HOH A . C 3 HOH 77 277 43 HOH HOH A . C 3 HOH 78 278 68 HOH HOH A . C 3 HOH 79 279 24 HOH HOH A . C 3 HOH 80 280 5 HOH HOH A . C 3 HOH 81 281 54 HOH HOH A . C 3 HOH 82 282 13 HOH HOH A . C 3 HOH 83 283 46 HOH HOH A . C 3 HOH 84 284 72 HOH HOH A . C 3 HOH 85 285 78 HOH HOH A . C 3 HOH 86 286 80 HOH HOH A . C 3 HOH 87 287 97 HOH HOH A . C 3 HOH 88 288 83 HOH HOH A . C 3 HOH 89 289 106 HOH HOH A . C 3 HOH 90 290 90 HOH HOH A . C 3 HOH 91 291 96 HOH HOH A . C 3 HOH 92 292 85 HOH HOH A . C 3 HOH 93 293 92 HOH HOH A . C 3 HOH 94 294 76 HOH HOH A . C 3 HOH 95 295 113 HOH HOH A . C 3 HOH 96 296 82 HOH HOH A . C 3 HOH 97 297 100 HOH HOH A . C 3 HOH 98 298 123 HOH HOH A . C 3 HOH 99 299 74 HOH HOH A . C 3 HOH 100 300 121 HOH HOH A . C 3 HOH 101 301 126 HOH HOH A . C 3 HOH 102 302 101 HOH HOH A . C 3 HOH 103 303 88 HOH HOH A . C 3 HOH 104 304 51 HOH HOH A . C 3 HOH 105 305 84 HOH HOH A . C 3 HOH 106 306 108 HOH HOH A . C 3 HOH 107 307 71 HOH HOH A . C 3 HOH 108 308 87 HOH HOH A . C 3 HOH 109 309 26 HOH HOH A . C 3 HOH 110 310 99 HOH HOH A . C 3 HOH 111 311 56 HOH HOH A . C 3 HOH 112 312 81 HOH HOH A . C 3 HOH 113 313 79 HOH HOH A . C 3 HOH 114 314 104 HOH HOH A . C 3 HOH 115 315 103 HOH HOH A . C 3 HOH 116 316 93 HOH HOH A . C 3 HOH 117 317 111 HOH HOH A . C 3 HOH 118 318 105 HOH HOH A . C 3 HOH 119 319 62 HOH HOH A . C 3 HOH 120 320 57 HOH HOH A . C 3 HOH 121 321 110 HOH HOH A . C 3 HOH 122 322 98 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 190 ? 1 MORE -6 ? 1 'SSA (A^2)' 4820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-10-13 2 'Structure model' 1 1 2021-11-17 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7DVF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 275 ? ? O A HOH 282 ? ? 1.62 2 1 O A HOH 235 ? ? O A HOH 275 ? ? 1.65 3 1 N A PRO 3 ? ? O A HOH 201 ? ? 1.66 4 1 O A HOH 276 ? ? O A HOH 279 ? ? 1.81 5 1 O A HOH 237 ? ? O A HOH 270 ? ? 1.84 6 1 O A HOH 237 ? ? O A HOH 276 ? ? 1.85 7 1 NZ A LYS 5 ? ? O A HOH 202 ? ? 1.86 8 1 O A HOH 303 ? ? O A HOH 319 ? ? 1.92 9 1 O A HOH 243 ? ? O A HOH 270 ? ? 1.93 10 1 O A HOH 255 ? ? O A HOH 276 ? ? 1.96 11 1 OE2 A GLU 10 ? A O A HOH 203 ? ? 1.97 12 1 O A HOH 273 ? ? O A HOH 295 ? ? 2.00 13 1 O A HOH 210 ? ? O A HOH 261 ? ? 2.11 14 1 O A HOH 284 ? ? O A HOH 297 ? ? 2.11 15 1 O A HOH 301 ? ? O A HOH 310 ? ? 2.13 16 1 OE2 A GLU 58 ? ? O A HOH 204 ? ? 2.14 17 1 NZ A LYS 18 ? ? O A HOH 205 ? ? 2.17 18 1 NZ A LYS 69 ? ? O A HOH 206 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CB A SER 44 ? ? 1_555 NZ A LYS 74 ? ? 4_455 1.53 2 1 CD A GLU 29 ? ? 1_555 O A HOH 263 ? ? 3_645 1.87 3 1 OG A SER 44 ? ? 1_555 NZ A LYS 74 ? ? 4_455 1.90 4 1 OE1 A GLU 29 ? ? 1_555 O A HOH 263 ? ? 3_645 1.99 5 1 O A HOH 209 ? ? 1_555 O A HOH 264 ? ? 4_455 2.08 6 1 O A HOH 207 ? ? 1_555 O A HOH 263 ? ? 3_645 2.12 7 1 O A HOH 261 ? ? 1_555 O A HOH 304 ? ? 4_545 2.14 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 45 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -117.30 _pdbx_validate_torsion.psi -140.91 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 0 A SER 44 ? A SER 44 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLU N N N N 57 GLU CA C N S 58 GLU C C N N 59 GLU O O N N 60 GLU CB C N N 61 GLU CG C N N 62 GLU CD C N N 63 GLU OE1 O N N 64 GLU OE2 O N N 65 GLU OXT O N N 66 GLU H H N N 67 GLU H2 H N N 68 GLU HA H N N 69 GLU HB2 H N N 70 GLU HB3 H N N 71 GLU HG2 H N N 72 GLU HG3 H N N 73 GLU HE2 H N N 74 GLU HXT H N N 75 GLY N N N N 76 GLY CA C N N 77 GLY C C N N 78 GLY O O N N 79 GLY OXT O N N 80 GLY H H N N 81 GLY H2 H N N 82 GLY HA2 H N N 83 GLY HA3 H N N 84 GLY HXT H N N 85 HOH O O N N 86 HOH H1 H N N 87 HOH H2 H N N 88 ILE N N N N 89 ILE CA C N S 90 ILE C C N N 91 ILE O O N N 92 ILE CB C N S 93 ILE CG1 C N N 94 ILE CG2 C N N 95 ILE CD1 C N N 96 ILE OXT O N N 97 ILE H H N N 98 ILE H2 H N N 99 ILE HA H N N 100 ILE HB H N N 101 ILE HG12 H N N 102 ILE HG13 H N N 103 ILE HG21 H N N 104 ILE HG22 H N N 105 ILE HG23 H N N 106 ILE HD11 H N N 107 ILE HD12 H N N 108 ILE HD13 H N N 109 ILE HXT H N N 110 LEU N N N N 111 LEU CA C N S 112 LEU C C N N 113 LEU O O N N 114 LEU CB C N N 115 LEU CG C N N 116 LEU CD1 C N N 117 LEU CD2 C N N 118 LEU OXT O N N 119 LEU H H N N 120 LEU H2 H N N 121 LEU HA H N N 122 LEU HB2 H N N 123 LEU HB3 H N N 124 LEU HG H N N 125 LEU HD11 H N N 126 LEU HD12 H N N 127 LEU HD13 H N N 128 LEU HD21 H N N 129 LEU HD22 H N N 130 LEU HD23 H N N 131 LEU HXT H N N 132 LYS N N N N 133 LYS CA C N S 134 LYS C C N N 135 LYS O O N N 136 LYS CB C N N 137 LYS CG C N N 138 LYS CD C N N 139 LYS CE C N N 140 LYS NZ N N N 141 LYS OXT O N N 142 LYS H H N N 143 LYS H2 H N N 144 LYS HA H N N 145 LYS HB2 H N N 146 LYS HB3 H N N 147 LYS HG2 H N N 148 LYS HG3 H N N 149 LYS HD2 H N N 150 LYS HD3 H N N 151 LYS HE2 H N N 152 LYS HE3 H N N 153 LYS HZ1 H N N 154 LYS HZ2 H N N 155 LYS HZ3 H N N 156 LYS HXT H N N 157 MET N N N N 158 MET CA C N S 159 MET C C N N 160 MET O O N N 161 MET CB C N N 162 MET CG C N N 163 MET SD S N N 164 MET CE C N N 165 MET OXT O N N 166 MET H H N N 167 MET H2 H N N 168 MET HA H N N 169 MET HB2 H N N 170 MET HB3 H N N 171 MET HG2 H N N 172 MET HG3 H N N 173 MET HE1 H N N 174 MET HE2 H N N 175 MET HE3 H N N 176 MET HXT H N N 177 MPD C1 C N N 178 MPD C2 C N N 179 MPD O2 O N N 180 MPD CM C N N 181 MPD C3 C N N 182 MPD C4 C N S 183 MPD O4 O N N 184 MPD C5 C N N 185 MPD H11 H N N 186 MPD H12 H N N 187 MPD H13 H N N 188 MPD HO2 H N N 189 MPD HM1 H N N 190 MPD HM2 H N N 191 MPD HM3 H N N 192 MPD H31 H N N 193 MPD H32 H N N 194 MPD H4 H N N 195 MPD HO4 H N N 196 MPD H51 H N N 197 MPD H52 H N N 198 MPD H53 H N N 199 PRO N N N N 200 PRO CA C N S 201 PRO C C N N 202 PRO O O N N 203 PRO CB C N N 204 PRO CG C N N 205 PRO CD C N N 206 PRO OXT O N N 207 PRO H H N N 208 PRO HA H N N 209 PRO HB2 H N N 210 PRO HB3 H N N 211 PRO HG2 H N N 212 PRO HG3 H N N 213 PRO HD2 H N N 214 PRO HD3 H N N 215 PRO HXT H N N 216 SER N N N N 217 SER CA C N S 218 SER C C N N 219 SER O O N N 220 SER CB C N N 221 SER OG O N N 222 SER OXT O N N 223 SER H H N N 224 SER H2 H N N 225 SER HA H N N 226 SER HB2 H N N 227 SER HB3 H N N 228 SER HG H N N 229 SER HXT H N N 230 THR N N N N 231 THR CA C N S 232 THR C C N N 233 THR O O N N 234 THR CB C N R 235 THR OG1 O N N 236 THR CG2 C N N 237 THR OXT O N N 238 THR H H N N 239 THR H2 H N N 240 THR HA H N N 241 THR HB H N N 242 THR HG1 H N N 243 THR HG21 H N N 244 THR HG22 H N N 245 THR HG23 H N N 246 THR HXT H N N 247 TYR N N N N 248 TYR CA C N S 249 TYR C C N N 250 TYR O O N N 251 TYR CB C N N 252 TYR CG C Y N 253 TYR CD1 C Y N 254 TYR CD2 C Y N 255 TYR CE1 C Y N 256 TYR CE2 C Y N 257 TYR CZ C Y N 258 TYR OH O N N 259 TYR OXT O N N 260 TYR H H N N 261 TYR H2 H N N 262 TYR HA H N N 263 TYR HB2 H N N 264 TYR HB3 H N N 265 TYR HD1 H N N 266 TYR HD2 H N N 267 TYR HE1 H N N 268 TYR HE2 H N N 269 TYR HH H N N 270 TYR HXT H N N 271 VAL N N N N 272 VAL CA C N S 273 VAL C C N N 274 VAL O O N N 275 VAL CB C N N 276 VAL CG1 C N N 277 VAL CG2 C N N 278 VAL OXT O N N 279 VAL H H N N 280 VAL H2 H N N 281 VAL HA H N N 282 VAL HB H N N 283 VAL HG11 H N N 284 VAL HG12 H N N 285 VAL HG13 H N N 286 VAL HG21 H N N 287 VAL HG22 H N N 288 VAL HG23 H N N 289 VAL HXT H N N 290 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLU N CA sing N N 54 GLU N H sing N N 55 GLU N H2 sing N N 56 GLU CA C sing N N 57 GLU CA CB sing N N 58 GLU CA HA sing N N 59 GLU C O doub N N 60 GLU C OXT sing N N 61 GLU CB CG sing N N 62 GLU CB HB2 sing N N 63 GLU CB HB3 sing N N 64 GLU CG CD sing N N 65 GLU CG HG2 sing N N 66 GLU CG HG3 sing N N 67 GLU CD OE1 doub N N 68 GLU CD OE2 sing N N 69 GLU OE2 HE2 sing N N 70 GLU OXT HXT sing N N 71 GLY N CA sing N N 72 GLY N H sing N N 73 GLY N H2 sing N N 74 GLY CA C sing N N 75 GLY CA HA2 sing N N 76 GLY CA HA3 sing N N 77 GLY C O doub N N 78 GLY C OXT sing N N 79 GLY OXT HXT sing N N 80 HOH O H1 sing N N 81 HOH O H2 sing N N 82 ILE N CA sing N N 83 ILE N H sing N N 84 ILE N H2 sing N N 85 ILE CA C sing N N 86 ILE CA CB sing N N 87 ILE CA HA sing N N 88 ILE C O doub N N 89 ILE C OXT sing N N 90 ILE CB CG1 sing N N 91 ILE CB CG2 sing N N 92 ILE CB HB sing N N 93 ILE CG1 CD1 sing N N 94 ILE CG1 HG12 sing N N 95 ILE CG1 HG13 sing N N 96 ILE CG2 HG21 sing N N 97 ILE CG2 HG22 sing N N 98 ILE CG2 HG23 sing N N 99 ILE CD1 HD11 sing N N 100 ILE CD1 HD12 sing N N 101 ILE CD1 HD13 sing N N 102 ILE OXT HXT sing N N 103 LEU N CA sing N N 104 LEU N H sing N N 105 LEU N H2 sing N N 106 LEU CA C sing N N 107 LEU CA CB sing N N 108 LEU CA HA sing N N 109 LEU C O doub N N 110 LEU C OXT sing N N 111 LEU CB CG sing N N 112 LEU CB HB2 sing N N 113 LEU CB HB3 sing N N 114 LEU CG CD1 sing N N 115 LEU CG CD2 sing N N 116 LEU CG HG sing N N 117 LEU CD1 HD11 sing N N 118 LEU CD1 HD12 sing N N 119 LEU CD1 HD13 sing N N 120 LEU CD2 HD21 sing N N 121 LEU CD2 HD22 sing N N 122 LEU CD2 HD23 sing N N 123 LEU OXT HXT sing N N 124 LYS N CA sing N N 125 LYS N H sing N N 126 LYS N H2 sing N N 127 LYS CA C sing N N 128 LYS CA CB sing N N 129 LYS CA HA sing N N 130 LYS C O doub N N 131 LYS C OXT sing N N 132 LYS CB CG sing N N 133 LYS CB HB2 sing N N 134 LYS CB HB3 sing N N 135 LYS CG CD sing N N 136 LYS CG HG2 sing N N 137 LYS CG HG3 sing N N 138 LYS CD CE sing N N 139 LYS CD HD2 sing N N 140 LYS CD HD3 sing N N 141 LYS CE NZ sing N N 142 LYS CE HE2 sing N N 143 LYS CE HE3 sing N N 144 LYS NZ HZ1 sing N N 145 LYS NZ HZ2 sing N N 146 LYS NZ HZ3 sing N N 147 LYS OXT HXT sing N N 148 MET N CA sing N N 149 MET N H sing N N 150 MET N H2 sing N N 151 MET CA C sing N N 152 MET CA CB sing N N 153 MET CA HA sing N N 154 MET C O doub N N 155 MET C OXT sing N N 156 MET CB CG sing N N 157 MET CB HB2 sing N N 158 MET CB HB3 sing N N 159 MET CG SD sing N N 160 MET CG HG2 sing N N 161 MET CG HG3 sing N N 162 MET SD CE sing N N 163 MET CE HE1 sing N N 164 MET CE HE2 sing N N 165 MET CE HE3 sing N N 166 MET OXT HXT sing N N 167 MPD C1 C2 sing N N 168 MPD C1 H11 sing N N 169 MPD C1 H12 sing N N 170 MPD C1 H13 sing N N 171 MPD C2 O2 sing N N 172 MPD C2 CM sing N N 173 MPD C2 C3 sing N N 174 MPD O2 HO2 sing N N 175 MPD CM HM1 sing N N 176 MPD CM HM2 sing N N 177 MPD CM HM3 sing N N 178 MPD C3 C4 sing N N 179 MPD C3 H31 sing N N 180 MPD C3 H32 sing N N 181 MPD C4 O4 sing N N 182 MPD C4 C5 sing N N 183 MPD C4 H4 sing N N 184 MPD O4 HO4 sing N N 185 MPD C5 H51 sing N N 186 MPD C5 H52 sing N N 187 MPD C5 H53 sing N N 188 PRO N CA sing N N 189 PRO N CD sing N N 190 PRO N H sing N N 191 PRO CA C sing N N 192 PRO CA CB sing N N 193 PRO CA HA sing N N 194 PRO C O doub N N 195 PRO C OXT sing N N 196 PRO CB CG sing N N 197 PRO CB HB2 sing N N 198 PRO CB HB3 sing N N 199 PRO CG CD sing N N 200 PRO CG HG2 sing N N 201 PRO CG HG3 sing N N 202 PRO CD HD2 sing N N 203 PRO CD HD3 sing N N 204 PRO OXT HXT sing N N 205 SER N CA sing N N 206 SER N H sing N N 207 SER N H2 sing N N 208 SER CA C sing N N 209 SER CA CB sing N N 210 SER CA HA sing N N 211 SER C O doub N N 212 SER C OXT sing N N 213 SER CB OG sing N N 214 SER CB HB2 sing N N 215 SER CB HB3 sing N N 216 SER OG HG sing N N 217 SER OXT HXT sing N N 218 THR N CA sing N N 219 THR N H sing N N 220 THR N H2 sing N N 221 THR CA C sing N N 222 THR CA CB sing N N 223 THR CA HA sing N N 224 THR C O doub N N 225 THR C OXT sing N N 226 THR CB OG1 sing N N 227 THR CB CG2 sing N N 228 THR CB HB sing N N 229 THR OG1 HG1 sing N N 230 THR CG2 HG21 sing N N 231 THR CG2 HG22 sing N N 232 THR CG2 HG23 sing N N 233 THR OXT HXT sing N N 234 TYR N CA sing N N 235 TYR N H sing N N 236 TYR N H2 sing N N 237 TYR CA C sing N N 238 TYR CA CB sing N N 239 TYR CA HA sing N N 240 TYR C O doub N N 241 TYR C OXT sing N N 242 TYR CB CG sing N N 243 TYR CB HB2 sing N N 244 TYR CB HB3 sing N N 245 TYR CG CD1 doub Y N 246 TYR CG CD2 sing Y N 247 TYR CD1 CE1 sing Y N 248 TYR CD1 HD1 sing N N 249 TYR CD2 CE2 doub Y N 250 TYR CD2 HD2 sing N N 251 TYR CE1 CZ doub Y N 252 TYR CE1 HE1 sing N N 253 TYR CE2 CZ sing Y N 254 TYR CE2 HE2 sing N N 255 TYR CZ OH sing N N 256 TYR OH HH sing N N 257 TYR OXT HXT sing N N 258 VAL N CA sing N N 259 VAL N H sing N N 260 VAL N H2 sing N N 261 VAL CA C sing N N 262 VAL CA CB sing N N 263 VAL CA HA sing N N 264 VAL C O doub N N 265 VAL C OXT sing N N 266 VAL CB CG1 sing N N 267 VAL CB CG2 sing N N 268 VAL CB HB sing N N 269 VAL CG1 HG11 sing N N 270 VAL CG1 HG12 sing N N 271 VAL CG1 HG13 sing N N 272 VAL CG2 HG21 sing N N 273 VAL CG2 HG22 sing N N 274 VAL CG2 HG23 sing N N 275 VAL OXT HXT sing N N 276 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 18H01328 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7DU6 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #