HEADER TRANSCRIPTION 15-JAN-21 7DVT TITLE CRYSTAL STRUCTURE OF HEME SENSOR PROTEIN PEFR IN COMPLEX WITH HEME AND TITLE 2 CARBON MONOXIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH MARR-TYPE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEME SENSOR PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROTYPE III (STRAIN SOURCE 3 NEM316); SOURCE 4 ORGANISM_TAXID: 211110; SOURCE 5 STRAIN: NEM316; SOURCE 6 GENE: GBS1402; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS HEME-BINDING, HELIX-TURN-HELIX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.NISHINAGA,S.NAGAI,Y.NISHITANI,H.SUGIMOTO,Y.SHIRO,H.SAWAI REVDAT 2 29-NOV-23 7DVT 1 REMARK REVDAT 1 29-SEP-21 7DVT 0 JRNL AUTH M.NISHINAGA,H.SUGIMOTO,Y.NISHITANI,S.NAGAI,S.NAGATOISHI, JRNL AUTH 2 N.MURAKI,T.TOSHA,K.TSUMOTO,S.AONO,Y.SHIRO,H.SAWAI JRNL TITL HEME CONTROLS THE STRUCTURAL REARRANGEMENT OF ITS SENSOR JRNL TITL 2 PROTEIN MEDIATING THE HEMOLYTIC BACTERIAL SURVIVAL. JRNL REF COMMUN BIOL V. 4 467 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 33850260 JRNL DOI 10.1038/S42003-021-01987-5 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1260 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1700 ; 1.894 ; 1.705 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 145 ; 5.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;32.948 ;22.931 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;18.368 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 159 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 912 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9963 6.5768 69.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.1913 REMARK 3 T33: 0.4166 T12: -0.0955 REMARK 3 T13: -0.2257 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 7.2415 L22: 0.4234 REMARK 3 L33: 5.4737 L12: -0.1376 REMARK 3 L13: 2.9198 L23: 1.0658 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: -0.2030 S13: 0.3304 REMARK 3 S21: 0.2694 S22: -0.2500 S23: -0.1627 REMARK 3 S31: 0.3537 S32: -0.9116 S33: 0.3562 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2706 4.1771 50.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.2880 T22: 0.6388 REMARK 3 T33: 0.2767 T12: 0.0072 REMARK 3 T13: -0.1550 T23: 0.1590 REMARK 3 L TENSOR REMARK 3 L11: 0.3226 L22: 2.4242 REMARK 3 L33: 2.2680 L12: -0.2981 REMARK 3 L13: -0.1145 L23: 2.2472 REMARK 3 S TENSOR REMARK 3 S11: -0.2565 S12: -0.2458 S13: 0.0325 REMARK 3 S21: -0.0778 S22: 0.1819 S23: -0.0304 REMARK 3 S31: -0.2933 S32: 0.2681 S33: 0.0746 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5644 -2.5095 43.5906 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.3056 REMARK 3 T33: 0.3128 T12: 0.0002 REMARK 3 T13: -0.0775 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 3.6784 L22: 1.2171 REMARK 3 L33: 1.1799 L12: -0.9739 REMARK 3 L13: -0.0645 L23: 0.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.3009 S13: -0.4326 REMARK 3 S21: -0.0501 S22: -0.1622 S23: -0.0062 REMARK 3 S31: -0.1855 S32: 0.1230 S33: 0.1406 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2954 14.7927 56.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2464 REMARK 3 T33: 0.1942 T12: -0.0206 REMARK 3 T13: -0.0802 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.4087 L22: 5.0375 REMARK 3 L33: 8.8781 L12: -1.2363 REMARK 3 L13: -1.8480 L23: 5.3504 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0601 S13: -0.0565 REMARK 3 S21: 0.2376 S22: -0.2378 S23: 0.2027 REMARK 3 S31: -0.1296 S32: 0.0004 S33: 0.2549 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0581 19.5399 75.3424 REMARK 3 T TENSOR REMARK 3 T11: 0.4882 T22: 0.2388 REMARK 3 T33: 0.3853 T12: -0.2121 REMARK 3 T13: -0.1310 T23: 0.0780 REMARK 3 L TENSOR REMARK 3 L11: 9.0280 L22: 1.9563 REMARK 3 L33: 4.3831 L12: -2.6700 REMARK 3 L13: 5.6264 L23: -2.6218 REMARK 3 S TENSOR REMARK 3 S11: -0.4312 S12: 0.6603 S13: -0.1524 REMARK 3 S21: -0.0943 S22: -0.0147 S23: -0.4412 REMARK 3 S31: -0.2601 S32: 0.3855 S33: 0.4459 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 27.3749 16.6690 62.2477 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2347 REMARK 3 T33: 0.2069 T12: -0.0071 REMARK 3 T13: -0.0598 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 10.8235 L22: 0.5681 REMARK 3 L33: 7.4946 L12: 2.4712 REMARK 3 L13: 9.0041 L23: 2.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.3679 S13: -0.2066 REMARK 3 S21: 0.0107 S22: 0.1104 S23: -0.0607 REMARK 3 S31: 0.0229 S32: 0.3281 S33: -0.1566 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7DVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 26, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 38.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.535 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.47 REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: RESOLVE 2.13 REMARK 200 STARTING MODEL: 7DVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24%(V/V) MPD, 5%(W/V) PEG400, 0.05 M REMARK 280 BIS-TRIS, PH 7.0, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.10150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.66550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.10150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.66550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.60825 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 152.77865 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 149 REMARK 465 VAL A 150 REMARK 465 LEU A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEM A 201 C CMO A 202 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 -71.91 -25.82 REMARK 500 MET A 142 -123.03 59.14 REMARK 500 SER A 147 -165.36 -114.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HEM A 201 NA 87.1 REMARK 620 3 HEM A 201 NB 93.8 85.7 REMARK 620 4 HEM A 201 NC 93.3 172.2 86.4 REMARK 620 5 HEM A 201 ND 87.2 94.9 178.8 93.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7DVR RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH HEME DBREF 7DVT A 1 146 UNP Q8E4J9 Q8E4J9_STRA3 1 146 SEQADV 7DVT SER A 147 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVT LEU A 148 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVT GLU A 149 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVT VAL A 150 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVT LEU A 151 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVT PHE A 152 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVT GLN A 153 UNP Q8E4J9 EXPRESSION TAG SEQRES 1 A 153 MET GLU ASN PRO LEU GLN LYS ALA ARG ILE LEU VAL ASN SEQRES 2 A 153 GLN LEU GLU LYS TYR LEU ASP ARG TYR ALA LYS GLU TYR SEQRES 3 A 153 ASP VAL GLU HIS LEU ALA GLY PRO GLN GLY HIS LEU VAL SEQRES 4 A 153 MET HIS LEU TYR LYS HIS PRO ASP LYS ASP MET SER ILE SEQRES 5 A 153 LYS ASP ALA GLU GLU ILE LEU HIS ILE SER LYS SER VAL SEQRES 6 A 153 ALA SER ASN LEU VAL LYS ARG MET GLU LYS ASN GLY PHE SEQRES 7 A 153 ILE ALA ILE VAL PRO SER LYS THR ASP LYS ARG VAL LYS SEQRES 8 A 153 TYR LEU TYR LEU THR HIS LEU GLY LYS GLN LYS ALA THR SEQRES 9 A 153 GLN PHE GLU ILE PHE LEU GLU LYS LEU HIS SER THR MET SEQRES 10 A 153 LEU ALA GLY ILE THR LYS GLU GLU ILE ARG THR THR LYS SEQRES 11 A 153 LYS VAL ILE ARG THR LEU ALA LYS ASN MET ALA MET GLU SEQRES 12 A 153 ASP PHE ASP SER LEU GLU VAL LEU PHE GLN HET HEM A 201 43 HET CMO A 202 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CMO CARBON MONOXIDE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CMO C O FORMUL 4 HOH *24(H2 O) HELIX 1 AA1 ASN A 3 TYR A 26 1 24 HELIX 2 AA2 GLY A 33 HIS A 45 1 13 HELIX 3 AA3 SER A 51 HIS A 60 1 10 HELIX 4 AA4 SER A 62 ASN A 76 1 15 HELIX 5 AA5 THR A 96 LEU A 118 1 23 HELIX 6 AA6 THR A 122 MET A 142 1 21 HELIX 7 AA7 GLU A 143 PHE A 145 5 3 SHEET 1 AA1 2 ILE A 79 PRO A 83 0 SHEET 2 AA1 2 LYS A 91 LEU A 95 -1 O TYR A 94 N ALA A 80 LINK NE2 HIS A 114 FE HEM A 201 1555 1555 1.98 SITE 1 AC1 10 ALA A 32 ARG A 72 LYS A 75 LEU A 110 SITE 2 AC1 10 HIS A 114 MET A 117 LEU A 118 LYS A 123 SITE 3 AC1 10 LEU A 136 CMO A 202 SITE 1 AC2 2 PRO A 4 HEM A 201 CRYST1 68.203 31.331 76.609 90.00 94.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014662 0.000000 0.001113 0.00000 SCALE2 0.000000 0.031917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013091 0.00000