HEADER TRANSCRIPTION 15-JAN-21 7DVV TITLE HEME SENSOR PROTEIN PEFR FROM STREPTOCOCCUS AGALACTIAE BOUND TO TITLE 2 OPERATOR DNA (28-MER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH MARR-TYPE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME SENSOR PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (28-MER); COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (28-MER); COMPND 12 CHAIN: M; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROTYPE III (STRAIN SOURCE 3 NEM316); SOURCE 4 ORGANISM_TAXID: 211110; SOURCE 5 STRAIN: NEM316; SOURCE 6 GENE: GBS1402; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE NEM316; SOURCE 14 ORGANISM_TAXID: 211110; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE NEM316; SOURCE 18 ORGANISM_TAXID: 211110 KEYWDS HEME-BINDING, HELIX-TURN-HELIX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.NISHINAGA,S.NAGAI,Y.NISHITANI,H.SUGIMOTO,Y.SHIRO,H.SAWAI REVDAT 2 29-NOV-23 7DVV 1 REMARK REVDAT 1 29-SEP-21 7DVV 0 JRNL AUTH M.NISHINAGA,H.SUGIMOTO,Y.NISHITANI,S.NAGAI,S.NAGATOISHI, JRNL AUTH 2 N.MURAKI,T.TOSHA,K.TSUMOTO,S.AONO,Y.SHIRO,H.SAWAI JRNL TITL HEME CONTROLS THE STRUCTURAL REARRANGEMENT OF ITS SENSOR JRNL TITL 2 PROTEIN MEDIATING THE HEMOLYTIC BACTERIAL SURVIVAL. JRNL REF COMMUN BIOL V. 4 467 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 33850260 JRNL DOI 10.1038/S42003-021-01987-5 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.4940 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.5410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2267 REMARK 3 NUCLEIC ACID ATOMS : 1148 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : 4.34000 REMARK 3 B12 (A**2) : -0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.302 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3591 ; 0.010 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5070 ; 1.885 ; 1.465 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.005 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;31.945 ;22.661 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;21.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.820 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2234 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0445 6.2739 -14.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.2270 REMARK 3 T33: 0.2221 T12: 0.1469 REMARK 3 T13: 0.0165 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.0835 L22: 1.0039 REMARK 3 L33: 3.5518 L12: -0.6346 REMARK 3 L13: 2.3739 L23: 1.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.3596 S12: 0.7166 S13: 0.0820 REMARK 3 S21: -0.1982 S22: -0.3455 S23: -0.0662 REMARK 3 S31: 0.0067 S32: 0.0778 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2791 22.7707 -14.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1848 REMARK 3 T33: 0.2891 T12: 0.1623 REMARK 3 T13: -0.0079 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.8400 L22: 1.5000 REMARK 3 L33: 2.6261 L12: -1.2596 REMARK 3 L13: -1.8707 L23: -0.3152 REMARK 3 S TENSOR REMARK 3 S11: 0.4931 S12: 0.6161 S13: -0.0552 REMARK 3 S21: -0.3672 S22: -0.4458 S23: 0.1026 REMARK 3 S31: -0.1405 S32: -0.1935 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 14 REMARK 3 RESIDUE RANGE : M 15 M 28 REMARK 3 ORIGIN FOR THE GROUP (A): -45.1066 5.8340 1.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0227 REMARK 3 T33: 0.3717 T12: -0.0364 REMARK 3 T13: 0.0109 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.9115 L22: 1.0130 REMARK 3 L33: 1.2893 L12: 0.1055 REMARK 3 L13: -0.9840 L23: 0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.0219 S13: -0.6420 REMARK 3 S21: 0.0297 S22: -0.0379 S23: 0.3797 REMARK 3 S31: 0.2754 S32: -0.1498 S33: 0.0697 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 15 L 28 REMARK 3 RESIDUE RANGE : M 1 M 14 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3681 23.3020 1.1736 REMARK 3 T TENSOR REMARK 3 T11: 0.0717 T22: 0.0277 REMARK 3 T33: 0.3513 T12: -0.0371 REMARK 3 T13: -0.0149 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 5.1663 L22: 0.5847 REMARK 3 L33: 1.1557 L12: 0.3042 REMARK 3 L13: 1.0801 L23: 0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: -0.0136 S13: 0.5758 REMARK 3 S21: -0.0073 S22: -0.0096 S23: -0.2630 REMARK 3 S31: -0.2558 S32: 0.1517 S33: 0.0730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7DVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : XSCALE JUN 1, 2017 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26423 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 47.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.992 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.05 REMARK 200 R MERGE FOR SHELL (I) : 1.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 7DVS, 4LLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) PEGMME 2000, 0.2 M LITHIUM REMARK 280 SULFATE, 0.1 M MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.99267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.99633 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 42.99633 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.99267 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 MET A 142 REMARK 465 GLU A 143 REMARK 465 ASP A 144 REMARK 465 PHE A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 LEU A 148 REMARK 465 GLU A 149 REMARK 465 VAL A 150 REMARK 465 LEU A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 MET B 1 REMARK 465 MET B 142 REMARK 465 GLU B 143 REMARK 465 ASP B 144 REMARK 465 PHE B 145 REMARK 465 ASP B 146 REMARK 465 SER B 147 REMARK 465 LEU B 148 REMARK 465 GLU B 149 REMARK 465 VAL B 150 REMARK 465 LEU B 151 REMARK 465 PHE B 152 REMARK 465 GLN B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA L 5 O3' DT L 6 P -0.073 REMARK 500 DT M 24 O3' DT M 25 P -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT L 9 O5' - P - OP1 ANGL. DEV. = -11.0 DEGREES REMARK 500 DC L 13 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DA L 17 O5' - P - OP1 ANGL. DEV. = 8.9 DEGREES REMARK 500 DA M 4 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT M 9 O5' - P - OP1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT M 10 O5' - P - OP1 ANGL. DEV. = -6.9 DEGREES REMARK 500 DC M 13 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC M 21 C1' - O4' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 30 -0.29 73.68 REMARK 500 MET A 140 57.32 -93.62 REMARK 500 HIS B 30 -0.57 77.63 REMARK 500 TYR B 43 -72.31 -50.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7DVR RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH HEME REMARK 900 RELATED ID: 7DVT RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH HEME AND CARBON MONOXIDE REMARK 900 RELATED ID: 7DVU RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH HEME AND CYANIDE REMARK 900 RELATED ID: 7DVS RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN LIGAND FREE DBREF 7DVV A 1 146 UNP Q8E4J9 Q8E4J9_STRA3 1 146 DBREF 7DVV B 1 146 UNP Q8E4J9 Q8E4J9_STRA3 1 146 DBREF 7DVV L 1 28 PDB 7DVV 7DVV 1 28 DBREF 7DVV M 1 28 PDB 7DVV 7DVV 1 28 SEQADV 7DVV SER A 147 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV LEU A 148 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV GLU A 149 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV VAL A 150 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV LEU A 151 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV PHE A 152 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV GLN A 153 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV SER B 147 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV LEU B 148 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV GLU B 149 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV VAL B 150 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV LEU B 151 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV PHE B 152 UNP Q8E4J9 EXPRESSION TAG SEQADV 7DVV GLN B 153 UNP Q8E4J9 EXPRESSION TAG SEQRES 1 A 153 MET GLU ASN PRO LEU GLN LYS ALA ARG ILE LEU VAL ASN SEQRES 2 A 153 GLN LEU GLU LYS TYR LEU ASP ARG TYR ALA LYS GLU TYR SEQRES 3 A 153 ASP VAL GLU HIS LEU ALA GLY PRO GLN GLY HIS LEU VAL SEQRES 4 A 153 MET HIS LEU TYR LYS HIS PRO ASP LYS ASP MET SER ILE SEQRES 5 A 153 LYS ASP ALA GLU GLU ILE LEU HIS ILE SER LYS SER VAL SEQRES 6 A 153 ALA SER ASN LEU VAL LYS ARG MET GLU LYS ASN GLY PHE SEQRES 7 A 153 ILE ALA ILE VAL PRO SER LYS THR ASP LYS ARG VAL LYS SEQRES 8 A 153 TYR LEU TYR LEU THR HIS LEU GLY LYS GLN LYS ALA THR SEQRES 9 A 153 GLN PHE GLU ILE PHE LEU GLU LYS LEU HIS SER THR MET SEQRES 10 A 153 LEU ALA GLY ILE THR LYS GLU GLU ILE ARG THR THR LYS SEQRES 11 A 153 LYS VAL ILE ARG THR LEU ALA LYS ASN MET ALA MET GLU SEQRES 12 A 153 ASP PHE ASP SER LEU GLU VAL LEU PHE GLN SEQRES 1 B 153 MET GLU ASN PRO LEU GLN LYS ALA ARG ILE LEU VAL ASN SEQRES 2 B 153 GLN LEU GLU LYS TYR LEU ASP ARG TYR ALA LYS GLU TYR SEQRES 3 B 153 ASP VAL GLU HIS LEU ALA GLY PRO GLN GLY HIS LEU VAL SEQRES 4 B 153 MET HIS LEU TYR LYS HIS PRO ASP LYS ASP MET SER ILE SEQRES 5 B 153 LYS ASP ALA GLU GLU ILE LEU HIS ILE SER LYS SER VAL SEQRES 6 B 153 ALA SER ASN LEU VAL LYS ARG MET GLU LYS ASN GLY PHE SEQRES 7 B 153 ILE ALA ILE VAL PRO SER LYS THR ASP LYS ARG VAL LYS SEQRES 8 B 153 TYR LEU TYR LEU THR HIS LEU GLY LYS GLN LYS ALA THR SEQRES 9 B 153 GLN PHE GLU ILE PHE LEU GLU LYS LEU HIS SER THR MET SEQRES 10 B 153 LEU ALA GLY ILE THR LYS GLU GLU ILE ARG THR THR LYS SEQRES 11 B 153 LYS VAL ILE ARG THR LEU ALA LYS ASN MET ALA MET GLU SEQRES 12 B 153 ASP PHE ASP SER LEU GLU VAL LEU PHE GLN SEQRES 1 L 28 DT DA DA DA DA DT DA DG DT DT DC DT DC SEQRES 2 L 28 DA DC DG DA DT DA DA DC DT DA DT DT DA SEQRES 3 L 28 DA DA SEQRES 1 M 28 DT DT DT DA DA DT DA DG DT DT DA DT DC SEQRES 2 M 28 DG DT DG DA DG DA DA DC DT DA DT DT DT SEQRES 3 M 28 DT DA FORMUL 5 HOH *9(H2 O) HELIX 1 AA1 ASN A 3 TYR A 26 1 24 HELIX 2 AA2 GLY A 33 HIS A 45 1 13 HELIX 3 AA3 ILE A 52 LEU A 59 1 8 HELIX 4 AA4 SER A 62 GLY A 77 1 16 HELIX 5 AA5 THR A 96 LEU A 118 1 23 HELIX 6 AA6 THR A 122 MET A 140 1 19 HELIX 7 AA7 ASN B 3 TYR B 26 1 24 HELIX 8 AA8 GLY B 33 HIS B 45 1 13 HELIX 9 AA9 ILE B 52 HIS B 60 1 9 HELIX 10 AB1 SER B 62 ASN B 76 1 15 HELIX 11 AB2 THR B 96 LEU B 118 1 23 HELIX 12 AB3 THR B 122 ASN B 139 1 18 SHEET 1 AA1 3 MET A 50 SER A 51 0 SHEET 2 AA1 3 LYS A 91 LEU A 95 -1 O LEU A 93 N MET A 50 SHEET 3 AA1 3 ILE A 79 PRO A 83 -1 N VAL A 82 O TYR A 92 SHEET 1 AA2 3 MET B 50 SER B 51 0 SHEET 2 AA2 3 LYS B 91 LEU B 95 -1 O LEU B 93 N MET B 50 SHEET 3 AA2 3 ILE B 79 PRO B 83 -1 N VAL B 82 O TYR B 92 CRYST1 100.973 100.973 128.989 90.00 90.00 120.00 P 32 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009904 0.005718 0.000000 0.00000 SCALE2 0.000000 0.011436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007753 0.00000