HEADER VIRAL PROTEIN/RNA 19-JAN-21 7DXP TITLE INFLUENZA H5N1 NUCLEOPROTEIN IN COMPLEX WITH NUCLEOTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(P*(OMU)P*(OMU)P*(OMU)P*(OMU))-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/HONG KONG/483/1997(H5N1)); SOURCE 3 ORGANISM_TAXID: 88104; SOURCE 4 STRAIN: A/HONG KONG/483/97(H5N1); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 10 ORGANISM_TAXID: 11309 KEYWDS NUCLEOCAPSID, RNA-BINDING, INFLUENZA NUCLEOPROTEIN, VIRAL PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.TANG,S.XU,Y.W.CHEN,J.H.WANG,P.C.SHAW REVDAT 3 27-MAR-24 7DXP 1 REMARK REVDAT 2 28-APR-21 7DXP 1 JRNL REVDAT 1 14-APR-21 7DXP 0 JRNL AUTH Y.S.TANG,S.XU,Y.W.CHEN,J.H.WANG,P.C.SHAW JRNL TITL CRYSTAL STRUCTURES OF INFLUENZA NUCLEOPROTEIN COMPLEXED WITH JRNL TITL 2 NUCLEIC ACID PROVIDE INSIGHTS INTO THE MECHANISM OF RNA JRNL TITL 3 INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 49 4144 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33784403 JRNL DOI 10.1093/NAR/GKAB203 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 37086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.032 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6461 REMARK 3 NUCLEIC ACID ATOMS : 66 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84800 REMARK 3 B22 (A**2) : 1.02500 REMARK 3 B33 (A**2) : -0.86400 REMARK 3 B12 (A**2) : 0.25200 REMARK 3 B13 (A**2) : -0.65900 REMARK 3 B23 (A**2) : -0.06700 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.420 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6680 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6268 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8976 ; 1.709 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14433 ; 1.327 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 815 ; 7.059 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 416 ;29.146 ;19.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1208 ;17.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 90 ;19.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 865 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7496 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1578 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1447 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 67 ; 0.273 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3234 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 241 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3272 ; 3.406 ; 3.423 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3271 ; 3.404 ; 3.422 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4077 ; 5.141 ; 5.110 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4078 ; 5.141 ; 5.111 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3408 ; 3.846 ; 3.927 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3409 ; 3.845 ; 3.927 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4897 ; 5.902 ; 5.705 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4898 ; 5.901 ; 5.705 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7DXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.0, 0.1 M NACL AND 11% REMARK 280 PEG2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -35 REMARK 465 GLY A -34 REMARK 465 SER A -33 REMARK 465 SER A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 SER A -25 REMARK 465 SER A -24 REMARK 465 GLY A -23 REMARK 465 LEU A -22 REMARK 465 VAL A -21 REMARK 465 PRO A -20 REMARK 465 ARG A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 SER A -13 REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLN A -8 REMARK 465 GLN A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 TYR A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 GLU A 18 REMARK 465 ARG A 19 REMARK 465 GLN A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 ASN A 76 REMARK 465 ARG A 77 REMARK 465 TYR A 78 REMARK 465 LEU A 79 REMARK 465 GLU A 80 REMARK 465 GLU A 81 REMARK 465 HIS A 82 REMARK 465 PRO A 83 REMARK 465 SER A 84 REMARK 465 ALA A 85 REMARK 465 GLY A 86 REMARK 465 ASN A 202 REMARK 465 ASP A 203 REMARK 465 ARG A 204 REMARK 465 ASN A 205 REMARK 465 ARG A 208 REMARK 465 GLY A 209 REMARK 465 GLU A 210 REMARK 465 ARG A 416 REMARK 465 THR A 417 REMARK 465 ARG A 418 REMARK 465 SER A 419 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 ASN A 422 REMARK 465 THR A 423 REMARK 465 ASN A 424 REMARK 465 GLN A 425 REMARK 465 GLN A 426 REMARK 465 ARG A 427 REMARK 465 ALA A 428 REMARK 465 PHE A 429 REMARK 465 LYS A 430 REMARK 465 GLY A 431 REMARK 465 ASN A 432 REMARK 465 THR A 433 REMARK 465 GLU A 434 REMARK 465 GLY A 435 REMARK 465 ARG A 436 REMARK 465 THR A 437 REMARK 465 PRO A 453 REMARK 465 GLU A 454 REMARK 465 ASP A 455 REMARK 465 VAL A 456 REMARK 465 SER A 457 REMARK 465 PHE A 458 REMARK 465 GLN A 459 REMARK 465 GLY A 460 REMARK 465 ARG A 461 REMARK 465 ASN A 498 REMARK 465 MET B -35 REMARK 465 GLY B -34 REMARK 465 SER B -33 REMARK 465 SER B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 SER B -25 REMARK 465 SER B -24 REMARK 465 GLY B -23 REMARK 465 LEU B -22 REMARK 465 VAL B -21 REMARK 465 PRO B -20 REMARK 465 ARG B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 SER B -13 REMARK 465 MET B -12 REMARK 465 THR B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 GLN B -8 REMARK 465 GLN B -7 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 TYR B 10 REMARK 465 GLU B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 GLU B 14 REMARK 465 THR B 15 REMARK 465 GLY B 16 REMARK 465 GLY B 17 REMARK 465 GLU B 18 REMARK 465 ARG B 19 REMARK 465 GLN B 20 REMARK 465 ASN B 21 REMARK 465 LEU B 79 REMARK 465 GLU B 80 REMARK 465 GLU B 81 REMARK 465 HIS B 82 REMARK 465 PRO B 83 REMARK 465 SER B 84 REMARK 465 ARG B 416 REMARK 465 THR B 417 REMARK 465 ARG B 418 REMARK 465 SER B 419 REMARK 465 GLY B 420 REMARK 465 GLY B 421 REMARK 465 ASN B 422 REMARK 465 THR B 423 REMARK 465 ASN B 424 REMARK 465 GLN B 425 REMARK 465 GLN B 426 REMARK 465 ARG B 427 REMARK 465 ALA B 428 REMARK 465 PHE B 429 REMARK 465 LYS B 430 REMARK 465 GLY B 431 REMARK 465 ASN B 432 REMARK 465 THR B 433 REMARK 465 GLU B 434 REMARK 465 GLY B 435 REMARK 465 ARG B 436 REMARK 465 GLU B 454 REMARK 465 ASP B 455 REMARK 465 VAL B 456 REMARK 465 SER B 457 REMARK 465 ASN B 498 REMARK 465 OMU C 5 REMARK 465 OMU C 6 REMARK 465 OMU C 7 REMARK 465 OMU C 8 REMARK 465 OMU C 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 452 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 470 ARG B 452 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 453 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 674 O HOH B 685 2.18 REMARK 500 OD1 ASP B 468 O LYS B 470 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 163.85 84.06 REMARK 500 GLU A 73 0.38 -51.68 REMARK 500 ARG A 74 -41.71 90.90 REMARK 500 ASP A 128 65.25 -101.23 REMARK 500 ALA A 129 77.13 -48.19 REMARK 500 ARG A 174 119.58 -27.28 REMARK 500 ARG A 175 94.92 52.28 REMARK 500 ARG A 214 -72.25 -51.58 REMARK 500 GLU A 244 53.25 -109.37 REMARK 500 VAL A 299 -31.69 -131.09 REMARK 500 THR B 23 -13.90 -25.58 REMARK 500 GLU B 73 74.89 -66.72 REMARK 500 ARG B 74 -51.49 -129.23 REMARK 500 ARG B 75 -65.73 70.09 REMARK 500 ARG B 77 88.23 -32.72 REMARK 500 ARG B 175 6.48 -60.08 REMARK 500 ARG B 175 12.43 -63.37 REMARK 500 GLU B 210 -74.23 31.74 REMARK 500 ARG B 214 -71.82 -52.04 REMARK 500 GLU B 244 53.45 -109.20 REMARK 500 ARG B 461 -94.47 -55.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 692 DISTANCE = 5.83 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 MISSING RESIDUES CONTAIN EXPRESSION TAGS, DISORDERED RESIDUES AND A REMARK 999 DELETION FROM 402-428. DBREF 7DXP A -35 498 PDB 7DXP 7DXP -35 498 DBREF 7DXP B -35 498 PDB 7DXP 7DXP -35 498 DBREF 7DXP C 1 9 PDB 7DXP 7DXP 1 9 SEQRES 1 A 507 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 507 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 507 GLY GLN GLN MET GLY ARG GLY SER GLU PHE MET ALA SER SEQRES 4 A 507 GLN GLY THR LYS ARG SER TYR GLU GLN MET GLU THR GLY SEQRES 5 A 507 GLY GLU ARG GLN ASN ALA THR GLU ILE ARG ALA SER VAL SEQRES 6 A 507 GLY ARG MET VAL GLY GLY ILE GLY ARG PHE TYR ILE GLN SEQRES 7 A 507 MET CYS THR GLU LEU LYS LEU SER ASP GLN GLU GLY ARG SEQRES 8 A 507 LEU ILE GLN ASN SER ILE THR ILE GLU ARG MET VAL LEU SEQRES 9 A 507 SER ALA PHE ASP GLU ARG ARG ASN ARG TYR LEU GLU GLU SEQRES 10 A 507 HIS PRO SER ALA GLY LYS ASP PRO LYS LYS THR GLY GLY SEQRES 11 A 507 PRO ILE TYR ARG ARG ARG ASP GLY LYS TRP VAL ARG GLU SEQRES 12 A 507 LEU ILE LEU TYR ASP LYS GLU GLU ILE ARG ARG ILE TRP SEQRES 13 A 507 ARG GLN ALA ASN ASN GLY GLU ASP ALA THR ALA GLY LEU SEQRES 14 A 507 THR HIS MET MET ILE TRP HIS SER ASN LEU ASN ASP ALA SEQRES 15 A 507 THR TYR GLN ARG THR ARG ALA LEU VAL ARG THR GLY MET SEQRES 16 A 507 ASP PRO ARG MET CYS SER LEU MET GLN GLY SER THR LEU SEQRES 17 A 507 PRO ARG ARG SER GLY ALA ALA GLY ALA ALA ILE LYS GLY SEQRES 18 A 507 VAL GLY THR MET VAL MET GLU LEU ILE ARG MET ILE LYS SEQRES 19 A 507 ARG GLY ILE ASN ASP ARG ASN PHE TRP ARG GLY GLU ASN SEQRES 20 A 507 GLY ARG ARG THR ARG ILE ALA TYR GLU ARG MET CYS ASN SEQRES 21 A 507 ILE LEU LYS GLY LYS PHE GLN THR ALA ALA GLN LYS ALA SEQRES 22 A 507 MET MET ASP GLN VAL ARG GLU SER ARG ASN PRO GLY ASN SEQRES 23 A 507 ALA GLU ILE GLU ASP LEU ILE PHE LEU ALA ARG SER ALA SEQRES 24 A 507 LEU ILE LEU ARG GLY SER ILE ALA HIS LYS SER CYS LEU SEQRES 25 A 507 PRO ALA CYS VAL TYR GLY LEU ALA VAL ALA SER GLY TYR SEQRES 26 A 507 ASP PHE GLU ARG GLU GLY TYR SER LEU VAL GLY ILE ASP SEQRES 27 A 507 PRO PHE ARG LEU LEU GLN ASN SER GLN VAL PHE SER LEU SEQRES 28 A 507 ILE ARG PRO ASN GLU ASN PRO ALA HIS LYS SER GLN LEU SEQRES 29 A 507 VAL TRP MET ALA CYS HIS SER ALA ALA PHE GLU ASP LEU SEQRES 30 A 507 ARG VAL SER SER PHE ILE ARG GLY THR ARG VAL ILE PRO SEQRES 31 A 507 ARG GLY GLN LEU SER THR ARG GLY VAL GLN ILE ALA SER SEQRES 32 A 507 ASN GLU ASN VAL GLU ALA MET ASP SER SER THR LEU GLU SEQRES 33 A 507 LEU ARG SER ARG TYR TRP ALA ILE ARG THR ARG SER GLY SEQRES 34 A 507 GLY ASN THR ASN GLN GLN ARG ALA PHE LYS GLY ASN THR SEQRES 35 A 507 GLU GLY ARG THR SER ASP MET ARG THR GLU ILE ILE ARG SEQRES 36 A 507 MET MET GLU SER ALA ARG PRO GLU ASP VAL SER PHE GLN SEQRES 37 A 507 GLY ARG GLY VAL PHE GLU LEU SER ASP GLU LYS ALA THR SEQRES 38 A 507 ASN PRO ILE VAL PRO SER PHE ASP MET SER ASN GLU GLY SEQRES 39 A 507 SER TYR PHE PHE GLY ASP ASN ALA GLU GLU TYR ASP ASN SEQRES 1 B 507 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 507 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 507 GLY GLN GLN MET GLY ARG GLY SER GLU PHE MET ALA SER SEQRES 4 B 507 GLN GLY THR LYS ARG SER TYR GLU GLN MET GLU THR GLY SEQRES 5 B 507 GLY GLU ARG GLN ASN ALA THR GLU ILE ARG ALA SER VAL SEQRES 6 B 507 GLY ARG MET VAL GLY GLY ILE GLY ARG PHE TYR ILE GLN SEQRES 7 B 507 MET CYS THR GLU LEU LYS LEU SER ASP GLN GLU GLY ARG SEQRES 8 B 507 LEU ILE GLN ASN SER ILE THR ILE GLU ARG MET VAL LEU SEQRES 9 B 507 SER ALA PHE ASP GLU ARG ARG ASN ARG TYR LEU GLU GLU SEQRES 10 B 507 HIS PRO SER ALA GLY LYS ASP PRO LYS LYS THR GLY GLY SEQRES 11 B 507 PRO ILE TYR ARG ARG ARG ASP GLY LYS TRP VAL ARG GLU SEQRES 12 B 507 LEU ILE LEU TYR ASP LYS GLU GLU ILE ARG ARG ILE TRP SEQRES 13 B 507 ARG GLN ALA ASN ASN GLY GLU ASP ALA THR ALA GLY LEU SEQRES 14 B 507 THR HIS MET MET ILE TRP HIS SER ASN LEU ASN ASP ALA SEQRES 15 B 507 THR TYR GLN ARG THR ARG ALA LEU VAL ARG THR GLY MET SEQRES 16 B 507 ASP PRO ARG MET CYS SER LEU MET GLN GLY SER THR LEU SEQRES 17 B 507 PRO ARG ARG SER GLY ALA ALA GLY ALA ALA ILE LYS GLY SEQRES 18 B 507 VAL GLY THR MET VAL MET GLU LEU ILE ARG MET ILE LYS SEQRES 19 B 507 ARG GLY ILE ASN ASP ARG ASN PHE TRP ARG GLY GLU ASN SEQRES 20 B 507 GLY ARG ARG THR ARG ILE ALA TYR GLU ARG MET CYS ASN SEQRES 21 B 507 ILE LEU LYS GLY LYS PHE GLN THR ALA ALA GLN LYS ALA SEQRES 22 B 507 MET MET ASP GLN VAL ARG GLU SER ARG ASN PRO GLY ASN SEQRES 23 B 507 ALA GLU ILE GLU ASP LEU ILE PHE LEU ALA ARG SER ALA SEQRES 24 B 507 LEU ILE LEU ARG GLY SER ILE ALA HIS LYS SER CYS LEU SEQRES 25 B 507 PRO ALA CYS VAL TYR GLY LEU ALA VAL ALA SER GLY TYR SEQRES 26 B 507 ASP PHE GLU ARG GLU GLY TYR SER LEU VAL GLY ILE ASP SEQRES 27 B 507 PRO PHE ARG LEU LEU GLN ASN SER GLN VAL PHE SER LEU SEQRES 28 B 507 ILE ARG PRO ASN GLU ASN PRO ALA HIS LYS SER GLN LEU SEQRES 29 B 507 VAL TRP MET ALA CYS HIS SER ALA ALA PHE GLU ASP LEU SEQRES 30 B 507 ARG VAL SER SER PHE ILE ARG GLY THR ARG VAL ILE PRO SEQRES 31 B 507 ARG GLY GLN LEU SER THR ARG GLY VAL GLN ILE ALA SER SEQRES 32 B 507 ASN GLU ASN VAL GLU ALA MET ASP SER SER THR LEU GLU SEQRES 33 B 507 LEU ARG SER ARG TYR TRP ALA ILE ARG THR ARG SER GLY SEQRES 34 B 507 GLY ASN THR ASN GLN GLN ARG ALA PHE LYS GLY ASN THR SEQRES 35 B 507 GLU GLY ARG THR SER ASP MET ARG THR GLU ILE ILE ARG SEQRES 36 B 507 MET MET GLU SER ALA ARG PRO GLU ASP VAL SER PHE GLN SEQRES 37 B 507 GLY ARG GLY VAL PHE GLU LEU SER ASP GLU LYS ALA THR SEQRES 38 B 507 ASN PRO ILE VAL PRO SER PHE ASP MET SER ASN GLU GLY SEQRES 39 B 507 SER TYR PHE PHE GLY ASP ASN ALA GLU GLU TYR ASP ASN SEQRES 1 C 9 OMU OMU OMU OMU OMU OMU OMU OMU OMU HET OMU C 1 21 HET OMU C 2 21 HET OMU C 3 21 HET OMU C 4 3 HET EDO A 501 4 HET EDO B 501 4 HETNAM OMU O2'-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 OMU 4(C10 H15 N2 O9 P) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *155(H2 O) HELIX 1 AA1 THR A 23 LEU A 47 1 25 HELIX 2 AA2 SER A 50 ARG A 55 1 6 HELIX 3 AA3 LEU A 56 PHE A 71 1 16 HELIX 4 AA4 LYS A 113 ASN A 124 1 12 HELIX 5 AA5 ALA A 129 TYR A 148 1 20 HELIX 6 AA6 ARG A 150 THR A 157 1 8 HELIX 7 AA7 ASP A 160 MET A 167 5 8 HELIX 8 AA8 SER A 176 LYS A 184 1 9 HELIX 9 AA9 GLY A 185 ILE A 201 1 17 HELIX 10 AB1 GLY A 212 PHE A 230 1 19 HELIX 11 AB2 THR A 232 GLU A 244 1 13 HELIX 12 AB3 GLY A 249 ALA A 263 1 15 HELIX 13 AB4 PRO A 277 SER A 287 1 11 HELIX 14 AB5 ASP A 290 GLY A 295 1 6 HELIX 15 AB6 ILE A 301 ASN A 309 1 9 HELIX 16 AB7 ASN A 321 HIS A 334 1 14 HELIX 17 AB8 ASP A 340 GLY A 349 1 10 HELIX 18 AB9 PRO A 354 LEU A 358 5 5 HELIX 19 AC1 ASN A 370 MET A 374 5 5 HELIX 20 AC2 ASP A 439 ALA A 451 1 13 HELIX 21 AC3 THR B 23 LEU B 47 1 25 HELIX 22 AC4 SER B 50 ARG B 55 1 6 HELIX 23 AC5 LEU B 56 PHE B 71 1 16 HELIX 24 AC6 LYS B 113 ASN B 124 1 12 HELIX 25 AC7 ALA B 129 TYR B 148 1 20 HELIX 26 AC8 ARG B 150 THR B 157 1 8 HELIX 27 AC9 ASP B 160 MET B 167 5 8 HELIX 28 AD1 PRO B 173 ARG B 175 5 3 HELIX 29 AD2 SER B 176 LYS B 184 1 9 HELIX 30 AD3 GLY B 185 ASP B 203 1 19 HELIX 31 AD4 ARG B 204 TRP B 207 5 4 HELIX 32 AD5 GLU B 210 PHE B 230 1 21 HELIX 33 AD6 THR B 232 GLU B 244 1 13 HELIX 34 AD7 GLY B 249 ALA B 263 1 15 HELIX 35 AD8 PRO B 277 SER B 287 1 11 HELIX 36 AD9 ASP B 290 GLY B 295 1 6 HELIX 37 AE1 ILE B 301 ASN B 309 1 9 HELIX 38 AE2 ASN B 321 HIS B 334 1 14 HELIX 39 AE3 ASP B 340 GLY B 349 1 10 HELIX 40 AE4 PRO B 354 LEU B 358 5 5 HELIX 41 AE5 ASN B 370 MET B 374 5 5 HELIX 42 AE6 SER B 438 ALA B 451 1 14 SHEET 1 AA1 2 LYS A 91 ARG A 100 0 SHEET 2 AA1 2 LYS A 103 ASP A 112 -1 O TYR A 111 N THR A 92 SHEET 1 AA2 2 PHE A 313 ILE A 316 0 SHEET 2 AA2 2 ASP A 375 THR A 378 -1 O SER A 377 N SER A 314 SHEET 1 AA3 2 TYR A 385 ALA A 387 0 SHEET 2 AA3 2 VAL A 463 GLU A 465 -1 O PHE A 464 N TRP A 386 SHEET 1 AA4 2 LYS B 91 ARG B 100 0 SHEET 2 AA4 2 LYS B 103 ASP B 112 -1 O TYR B 111 N THR B 92 SHEET 1 AA5 2 PHE B 313 ILE B 316 0 SHEET 2 AA5 2 ASP B 375 THR B 378 -1 O SER B 377 N SER B 314 SHEET 1 AA6 2 TYR B 385 ALA B 387 0 SHEET 2 AA6 2 VAL B 463 GLU B 465 -1 O PHE B 464 N TRP B 386 LINK O3' OMU C 1 P OMU C 2 1555 1555 1.59 LINK O3' OMU C 2 P OMU C 3 1555 1555 1.62 LINK O3' OMU C 3 P OMU C 4 1555 1555 1.62 CRYST1 54.010 60.630 82.710 106.70 109.01 96.62 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018515 0.002149 0.007591 0.00000 SCALE2 0.000000 0.016604 0.006122 0.00000 SCALE3 0.000000 0.000000 0.013630 0.00000