data_7DXY # _entry.id 7DXY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DXY pdb_00007dxy 10.2210/pdb7dxy/pdb WWPDB D_1300020276 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DXY _pdbx_database_status.recvd_initial_deposition_date 2021-01-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yagi, S.' 1 ? 'Tagami, S.' 2 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 143 ? 15998 16006 'Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.' 2021 ? 10.1021/jacs.1c05367 34559526 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Seven amino acid types suffice to reconstruct the core fold of RNA polymerase.' 2021 ? 10.1101/2021.02.22.432383 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yagi, S.' 1 ? primary 'Padhi, A.K.' 2 ? primary 'Vucinic, J.' 3 ? primary 'Barbe, S.' 4 ? primary 'Schiex, T.' 5 ? primary 'Nakagawa, R.' 6 0000-0002-6178-2945 primary 'Simoncini, D.' 7 ? primary 'Zhang, K.Y.J.' 8 0000-0002-9282-8045 primary 'Tagami, S.' 9 0000-0002-1720-3627 1 'Yagi, S.' 10 ? 1 'Padhi, A.K.' 11 ? 1 'Vucinic, J.' 12 ? 1 'Barbe, S.' 13 ? 1 'Schiex, T.' 14 ? 1 'Nakagawa, R.' 15 ? 1 'Simoncini, D.' 16 ? 1 'Zhang, K.Y.J.' 17 ? 1 'Tagami, S.' 18 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7DXY _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.660 _cell.length_a_esd ? _cell.length_b 39.688 _cell.length_b_esd ? _cell.length_c 64.283 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man mk2h_deltaMILPS 4846.713 2 ? ? ? ? 2 water nat water 18.015 96 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KKVVARVAEAYAEDVGKRVVRVDKYERAKVGVKVGDYVEVKKV _entity_poly.pdbx_seq_one_letter_code_can KKVVARVAEAYAEDVGKRVVRVDKYERAKVGVKVGDYVEVKKV _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 VAL n 1 4 VAL n 1 5 ALA n 1 6 ARG n 1 7 VAL n 1 8 ALA n 1 9 GLU n 1 10 ALA n 1 11 TYR n 1 12 ALA n 1 13 GLU n 1 14 ASP n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 ARG n 1 19 VAL n 1 20 VAL n 1 21 ARG n 1 22 VAL n 1 23 ASP n 1 24 LYS n 1 25 TYR n 1 26 GLU n 1 27 ARG n 1 28 ALA n 1 29 LYS n 1 30 VAL n 1 31 GLY n 1 32 VAL n 1 33 LYS n 1 34 VAL n 1 35 GLY n 1 36 ASP n 1 37 TYR n 1 38 VAL n 1 39 GLU n 1 40 VAL n 1 41 LYS n 1 42 LYS n 1 43 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 43 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7DXY _struct_ref.pdbx_db_accession 7DXY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7DXY B 1 ? 43 ? 7DXY 4 ? 46 ? 4 46 2 1 7DXY A 1 ? 43 ? 7DXY 4 ? 46 ? 4 46 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DXY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '400mM Sodium phosphate monobasic/1600mM Pottasium phosphate dibasic, 100 mM imidazole_HCl, pH 8.0, 200 mM NaCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-09-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7DXY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.35 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17566 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.26 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.85 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.44 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2759 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.832 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 98.940 _refine.B_iso_mean 31.1788 _refine.B_iso_min 16.930 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DXY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4000 _refine.ls_d_res_low 24.2630 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15896 _refine.ls_number_reflns_R_free 1592 _refine.ls_number_reflns_R_work 14304 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.1600 _refine.ls_percent_reflns_R_free 10.0200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2129 _refine.ls_R_factor_R_free 0.2296 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2110 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.470 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7DXX _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.1500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.4000 _refine_hist.d_res_low 24.2630 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 760 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 84 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 40.46 _refine_hist.pdbx_number_atoms_protein 664 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.4000 1.4452 . . 139 1253 100.0000 . . . 0.3184 0.0000 0.3257 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4452 1.4968 . . 144 1286 100.0000 . . . 0.2958 0.0000 0.2961 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4968 1.5568 . . 143 1288 100.0000 . . . 0.2821 0.0000 0.2763 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5568 1.6276 . . 142 1292 100.0000 . . . 0.2440 0.0000 0.2559 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6276 1.7134 . . 144 1291 99.0000 . . . 0.2987 0.0000 0.2542 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7134 1.8207 . . 144 1285 99.0000 . . . 0.2363 0.0000 0.2355 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8207 1.9612 . . 142 1284 99.0000 . . . 0.2217 0.0000 0.2300 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9612 2.1585 . . 147 1322 100.0000 . . . 0.1884 0.0000 0.1976 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1585 2.4705 . . 145 1311 99.0000 . . . 0.2465 0.0000 0.1961 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4705 3.1116 . . 150 1336 100.0000 . . . 0.2137 0.0000 0.2110 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1116 24.2630 . . 152 1356 95.0000 . . . 0.2227 0.0000 0.1908 . . . . . . . . . . . # _struct.entry_id 7DXY _struct.title 'Crystal structure of the chemically synthesized mk2h_deltaMILPS peptide homodimer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DXY _struct_keywords.text 'Double psi beta barrel, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 11 ? VAL A 15 ? TYR B 14 VAL B 18 5 ? 5 HELX_P HELX_P2 AA2 ASP A 23 ? GLY A 31 ? ASP B 26 GLY B 34 1 ? 9 HELX_P HELX_P3 AA3 TYR B 11 ? VAL B 15 ? TYR A 14 VAL A 18 5 ? 5 HELX_P HELX_P4 AA4 ASP B 23 ? GLY B 31 ? ASP A 26 GLY A 34 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 3 ? GLU A 9 ? VAL B 6 GLU B 12 AA1 2 VAL B 19 ? VAL B 22 ? VAL A 22 VAL A 25 AA1 3 VAL A 19 ? VAL A 22 ? VAL B 22 VAL B 25 AA1 4 VAL B 3 ? GLU B 9 ? VAL A 6 GLU A 12 AA1 5 TYR A 37 ? LYS A 42 ? TYR B 40 LYS B 45 AA1 6 TYR B 37 ? LYS B 42 ? TYR A 40 LYS A 45 AA1 7 VAL A 3 ? GLU A 9 ? VAL B 6 GLU B 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 6 ? N ARG B 9 O VAL B 20 ? O VAL A 23 AA1 2 3 O ARG B 21 ? O ARG A 24 N ARG A 21 ? N ARG B 24 AA1 3 4 N VAL A 20 ? N VAL B 23 O ARG B 6 ? O ARG A 9 AA1 4 5 O VAL B 3 ? O VAL A 6 N VAL A 40 ? N VAL B 43 AA1 5 6 N LYS A 41 ? N LYS B 44 O GLU B 39 ? O GLU A 42 AA1 6 7 O VAL B 40 ? O VAL A 43 N VAL A 3 ? N VAL B 6 # _atom_sites.entry_id 7DXY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.032616 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025197 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015556 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 4 ? ? ? B . n A 1 2 LYS 2 5 5 LYS LYS B . n A 1 3 VAL 3 6 6 VAL VAL B . n A 1 4 VAL 4 7 7 VAL VAL B . n A 1 5 ALA 5 8 8 ALA ALA B . n A 1 6 ARG 6 9 9 ARG ARG B . n A 1 7 VAL 7 10 10 VAL VAL B . n A 1 8 ALA 8 11 11 ALA ALA B . n A 1 9 GLU 9 12 12 GLU GLU B . n A 1 10 ALA 10 13 13 ALA ALA B . n A 1 11 TYR 11 14 14 TYR TYR B . n A 1 12 ALA 12 15 15 ALA ALA B . n A 1 13 GLU 13 16 16 GLU GLU B . n A 1 14 ASP 14 17 17 ASP ASP B . n A 1 15 VAL 15 18 18 VAL VAL B . n A 1 16 GLY 16 19 19 GLY GLY B . n A 1 17 LYS 17 20 20 LYS LYS B . n A 1 18 ARG 18 21 21 ARG ARG B . n A 1 19 VAL 19 22 22 VAL VAL B . n A 1 20 VAL 20 23 23 VAL VAL B . n A 1 21 ARG 21 24 24 ARG ARG B . n A 1 22 VAL 22 25 25 VAL VAL B . n A 1 23 ASP 23 26 26 ASP ASP B . n A 1 24 LYS 24 27 27 LYS LYS B . n A 1 25 TYR 25 28 28 TYR TYR B . n A 1 26 GLU 26 29 29 GLU GLU B . n A 1 27 ARG 27 30 30 ARG ARG B . n A 1 28 ALA 28 31 31 ALA ALA B . n A 1 29 LYS 29 32 32 LYS LYS B . n A 1 30 VAL 30 33 33 VAL VAL B . n A 1 31 GLY 31 34 34 GLY GLY B . n A 1 32 VAL 32 35 35 VAL VAL B . n A 1 33 LYS 33 36 36 LYS LYS B . n A 1 34 VAL 34 37 37 VAL VAL B . n A 1 35 GLY 35 38 38 GLY GLY B . n A 1 36 ASP 36 39 39 ASP ASP B . n A 1 37 TYR 37 40 40 TYR TYR B . n A 1 38 VAL 38 41 41 VAL VAL B . n A 1 39 GLU 39 42 42 GLU GLU B . n A 1 40 VAL 40 43 43 VAL VAL B . n A 1 41 LYS 41 44 44 LYS LYS B . n A 1 42 LYS 42 45 45 LYS LYS B . n A 1 43 VAL 43 46 46 VAL VAL B . n B 1 1 LYS 1 4 ? ? ? A . n B 1 2 LYS 2 5 5 LYS LYS A . n B 1 3 VAL 3 6 6 VAL VAL A . n B 1 4 VAL 4 7 7 VAL VAL A . n B 1 5 ALA 5 8 8 ALA ALA A . n B 1 6 ARG 6 9 9 ARG ARG A . n B 1 7 VAL 7 10 10 VAL VAL A . n B 1 8 ALA 8 11 11 ALA ALA A . n B 1 9 GLU 9 12 12 GLU GLU A . n B 1 10 ALA 10 13 13 ALA ALA A . n B 1 11 TYR 11 14 14 TYR TYR A . n B 1 12 ALA 12 15 15 ALA ALA A . n B 1 13 GLU 13 16 16 GLU GLU A . n B 1 14 ASP 14 17 17 ASP ASP A . n B 1 15 VAL 15 18 18 VAL VAL A . n B 1 16 GLY 16 19 19 GLY GLY A . n B 1 17 LYS 17 20 20 LYS LYS A . n B 1 18 ARG 18 21 21 ARG ARG A . n B 1 19 VAL 19 22 22 VAL VAL A . n B 1 20 VAL 20 23 23 VAL VAL A . n B 1 21 ARG 21 24 24 ARG ARG A . n B 1 22 VAL 22 25 25 VAL VAL A . n B 1 23 ASP 23 26 26 ASP ASP A . n B 1 24 LYS 24 27 27 LYS LYS A . n B 1 25 TYR 25 28 28 TYR TYR A . n B 1 26 GLU 26 29 29 GLU GLU A . n B 1 27 ARG 27 30 30 ARG ARG A . n B 1 28 ALA 28 31 31 ALA ALA A . n B 1 29 LYS 29 32 32 LYS LYS A . n B 1 30 VAL 30 33 33 VAL VAL A . n B 1 31 GLY 31 34 34 GLY GLY A . n B 1 32 VAL 32 35 35 VAL VAL A . n B 1 33 LYS 33 36 36 LYS LYS A . n B 1 34 VAL 34 37 37 VAL VAL A . n B 1 35 GLY 35 38 38 GLY GLY A . n B 1 36 ASP 36 39 39 ASP ASP A . n B 1 37 TYR 37 40 40 TYR TYR A . n B 1 38 VAL 38 41 41 VAL VAL A . n B 1 39 GLU 39 42 42 GLU GLU A . n B 1 40 VAL 40 43 43 VAL VAL A . n B 1 41 LYS 41 44 44 LYS LYS A . n B 1 42 LYS 42 45 45 LYS LYS A . n B 1 43 VAL 43 46 46 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 74 HOH HOH B . C 2 HOH 2 102 97 HOH HOH B . C 2 HOH 3 103 60 HOH HOH B . C 2 HOH 4 104 67 HOH HOH B . C 2 HOH 5 105 100 HOH HOH B . C 2 HOH 6 106 11 HOH HOH B . C 2 HOH 7 107 96 HOH HOH B . C 2 HOH 8 108 4 HOH HOH B . C 2 HOH 9 109 80 HOH HOH B . C 2 HOH 10 110 55 HOH HOH B . C 2 HOH 11 111 41 HOH HOH B . C 2 HOH 12 112 50 HOH HOH B . C 2 HOH 13 113 23 HOH HOH B . C 2 HOH 14 114 93 HOH HOH B . C 2 HOH 15 115 48 HOH HOH B . C 2 HOH 16 116 29 HOH HOH B . C 2 HOH 17 117 26 HOH HOH B . C 2 HOH 18 118 20 HOH HOH B . C 2 HOH 19 119 7 HOH HOH B . C 2 HOH 20 120 40 HOH HOH B . C 2 HOH 21 121 21 HOH HOH B . C 2 HOH 22 122 91 HOH HOH B . C 2 HOH 23 123 76 HOH HOH B . C 2 HOH 24 124 10 HOH HOH B . C 2 HOH 25 125 85 HOH HOH B . C 2 HOH 26 126 49 HOH HOH B . C 2 HOH 27 127 15 HOH HOH B . C 2 HOH 28 128 56 HOH HOH B . C 2 HOH 29 129 66 HOH HOH B . C 2 HOH 30 130 38 HOH HOH B . C 2 HOH 31 131 16 HOH HOH B . C 2 HOH 32 132 12 HOH HOH B . C 2 HOH 33 133 61 HOH HOH B . C 2 HOH 34 134 69 HOH HOH B . C 2 HOH 35 135 102 HOH HOH B . C 2 HOH 36 136 81 HOH HOH B . C 2 HOH 37 137 45 HOH HOH B . C 2 HOH 38 138 58 HOH HOH B . C 2 HOH 39 139 42 HOH HOH B . C 2 HOH 40 140 1 HOH HOH B . C 2 HOH 41 141 47 HOH HOH B . C 2 HOH 42 142 75 HOH HOH B . C 2 HOH 43 143 71 HOH HOH B . C 2 HOH 44 144 79 HOH HOH B . C 2 HOH 45 145 31 HOH HOH B . C 2 HOH 46 146 90 HOH HOH B . C 2 HOH 47 147 99 HOH HOH B . C 2 HOH 48 148 43 HOH HOH B . C 2 HOH 49 149 59 HOH HOH B . D 2 HOH 1 101 83 HOH HOH A . D 2 HOH 2 102 28 HOH HOH A . D 2 HOH 3 103 70 HOH HOH A . D 2 HOH 4 104 63 HOH HOH A . D 2 HOH 5 105 88 HOH HOH A . D 2 HOH 6 106 25 HOH HOH A . D 2 HOH 7 107 52 HOH HOH A . D 2 HOH 8 108 77 HOH HOH A . D 2 HOH 9 109 62 HOH HOH A . D 2 HOH 10 110 36 HOH HOH A . D 2 HOH 11 111 53 HOH HOH A . D 2 HOH 12 112 18 HOH HOH A . D 2 HOH 13 113 6 HOH HOH A . D 2 HOH 14 114 5 HOH HOH A . D 2 HOH 15 115 65 HOH HOH A . D 2 HOH 16 116 3 HOH HOH A . D 2 HOH 17 117 30 HOH HOH A . D 2 HOH 18 118 54 HOH HOH A . D 2 HOH 19 119 33 HOH HOH A . D 2 HOH 20 120 8 HOH HOH A . D 2 HOH 21 121 2 HOH HOH A . D 2 HOH 22 122 32 HOH HOH A . D 2 HOH 23 123 9 HOH HOH A . D 2 HOH 24 124 35 HOH HOH A . D 2 HOH 25 125 64 HOH HOH A . D 2 HOH 26 126 82 HOH HOH A . D 2 HOH 27 127 68 HOH HOH A . D 2 HOH 28 128 13 HOH HOH A . D 2 HOH 29 129 19 HOH HOH A . D 2 HOH 30 130 34 HOH HOH A . D 2 HOH 31 131 14 HOH HOH A . D 2 HOH 32 132 27 HOH HOH A . D 2 HOH 33 133 98 HOH HOH A . D 2 HOH 34 134 17 HOH HOH A . D 2 HOH 35 135 87 HOH HOH A . D 2 HOH 36 136 37 HOH HOH A . D 2 HOH 37 137 46 HOH HOH A . D 2 HOH 38 138 101 HOH HOH A . D 2 HOH 39 139 84 HOH HOH A . D 2 HOH 40 140 73 HOH HOH A . D 2 HOH 41 141 86 HOH HOH A . D 2 HOH 42 142 89 HOH HOH A . D 2 HOH 43 143 92 HOH HOH A . D 2 HOH 44 144 39 HOH HOH A . D 2 HOH 45 145 78 HOH HOH A . D 2 HOH 46 146 72 HOH HOH A . D 2 HOH 47 147 44 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4350 ? 1 MORE -17 ? 1 'SSA (A^2)' 4720 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-29 2 'Structure model' 1 1 2021-11-17 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' citation 6 3 'Structure model' pdbx_initial_refinement_model # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_id_ISSN' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 114 ? ? O B HOH 147 ? ? 1.76 2 1 NZ A LYS 45 ? ? O A HOH 101 ? ? 1.78 3 1 O A HOH 137 ? ? O A HOH 138 ? ? 1.95 4 1 O A HOH 108 ? ? O A HOH 145 ? ? 1.98 5 1 N A LYS 5 ? ? O A HOH 102 ? ? 2.04 6 1 O B HOH 120 ? ? O B HOH 135 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 141 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 139 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B LYS 4 ? A LYS 1 2 1 Y 1 A LYS 4 ? B LYS 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLU N N N N 57 GLU CA C N S 58 GLU C C N N 59 GLU O O N N 60 GLU CB C N N 61 GLU CG C N N 62 GLU CD C N N 63 GLU OE1 O N N 64 GLU OE2 O N N 65 GLU OXT O N N 66 GLU H H N N 67 GLU H2 H N N 68 GLU HA H N N 69 GLU HB2 H N N 70 GLU HB3 H N N 71 GLU HG2 H N N 72 GLU HG3 H N N 73 GLU HE2 H N N 74 GLU HXT H N N 75 GLY N N N N 76 GLY CA C N N 77 GLY C C N N 78 GLY O O N N 79 GLY OXT O N N 80 GLY H H N N 81 GLY H2 H N N 82 GLY HA2 H N N 83 GLY HA3 H N N 84 GLY HXT H N N 85 HOH O O N N 86 HOH H1 H N N 87 HOH H2 H N N 88 LYS N N N N 89 LYS CA C N S 90 LYS C C N N 91 LYS O O N N 92 LYS CB C N N 93 LYS CG C N N 94 LYS CD C N N 95 LYS CE C N N 96 LYS NZ N N N 97 LYS OXT O N N 98 LYS H H N N 99 LYS H2 H N N 100 LYS HA H N N 101 LYS HB2 H N N 102 LYS HB3 H N N 103 LYS HG2 H N N 104 LYS HG3 H N N 105 LYS HD2 H N N 106 LYS HD3 H N N 107 LYS HE2 H N N 108 LYS HE3 H N N 109 LYS HZ1 H N N 110 LYS HZ2 H N N 111 LYS HZ3 H N N 112 LYS HXT H N N 113 TYR N N N N 114 TYR CA C N S 115 TYR C C N N 116 TYR O O N N 117 TYR CB C N N 118 TYR CG C Y N 119 TYR CD1 C Y N 120 TYR CD2 C Y N 121 TYR CE1 C Y N 122 TYR CE2 C Y N 123 TYR CZ C Y N 124 TYR OH O N N 125 TYR OXT O N N 126 TYR H H N N 127 TYR H2 H N N 128 TYR HA H N N 129 TYR HB2 H N N 130 TYR HB3 H N N 131 TYR HD1 H N N 132 TYR HD2 H N N 133 TYR HE1 H N N 134 TYR HE2 H N N 135 TYR HH H N N 136 TYR HXT H N N 137 VAL N N N N 138 VAL CA C N S 139 VAL C C N N 140 VAL O O N N 141 VAL CB C N N 142 VAL CG1 C N N 143 VAL CG2 C N N 144 VAL OXT O N N 145 VAL H H N N 146 VAL H2 H N N 147 VAL HA H N N 148 VAL HB H N N 149 VAL HG11 H N N 150 VAL HG12 H N N 151 VAL HG13 H N N 152 VAL HG21 H N N 153 VAL HG22 H N N 154 VAL HG23 H N N 155 VAL HXT H N N 156 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLU N CA sing N N 54 GLU N H sing N N 55 GLU N H2 sing N N 56 GLU CA C sing N N 57 GLU CA CB sing N N 58 GLU CA HA sing N N 59 GLU C O doub N N 60 GLU C OXT sing N N 61 GLU CB CG sing N N 62 GLU CB HB2 sing N N 63 GLU CB HB3 sing N N 64 GLU CG CD sing N N 65 GLU CG HG2 sing N N 66 GLU CG HG3 sing N N 67 GLU CD OE1 doub N N 68 GLU CD OE2 sing N N 69 GLU OE2 HE2 sing N N 70 GLU OXT HXT sing N N 71 GLY N CA sing N N 72 GLY N H sing N N 73 GLY N H2 sing N N 74 GLY CA C sing N N 75 GLY CA HA2 sing N N 76 GLY CA HA3 sing N N 77 GLY C O doub N N 78 GLY C OXT sing N N 79 GLY OXT HXT sing N N 80 HOH O H1 sing N N 81 HOH O H2 sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 TYR N CA sing N N 107 TYR N H sing N N 108 TYR N H2 sing N N 109 TYR CA C sing N N 110 TYR CA CB sing N N 111 TYR CA HA sing N N 112 TYR C O doub N N 113 TYR C OXT sing N N 114 TYR CB CG sing N N 115 TYR CB HB2 sing N N 116 TYR CB HB3 sing N N 117 TYR CG CD1 doub Y N 118 TYR CG CD2 sing Y N 119 TYR CD1 CE1 sing Y N 120 TYR CD1 HD1 sing N N 121 TYR CD2 CE2 doub Y N 122 TYR CD2 HD2 sing N N 123 TYR CE1 CZ doub Y N 124 TYR CE1 HE1 sing N N 125 TYR CE2 CZ sing Y N 126 TYR CE2 HE2 sing N N 127 TYR CZ OH sing N N 128 TYR OH HH sing N N 129 TYR OXT HXT sing N N 130 VAL N CA sing N N 131 VAL N H sing N N 132 VAL N H2 sing N N 133 VAL CA C sing N N 134 VAL CA CB sing N N 135 VAL CA HA sing N N 136 VAL C O doub N N 137 VAL C OXT sing N N 138 VAL CB CG1 sing N N 139 VAL CB CG2 sing N N 140 VAL CB HB sing N N 141 VAL CG1 HG11 sing N N 142 VAL CG1 HG12 sing N N 143 VAL CG1 HG13 sing N N 144 VAL CG2 HG21 sing N N 145 VAL CG2 HG22 sing N N 146 VAL CG2 HG23 sing N N 147 VAL OXT HXT sing N N 148 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 18H01328 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7DXX _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #