data_7DY0 # _entry.id 7DY0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DY0 pdb_00007dy0 10.2210/pdb7dy0/pdb WWPDB D_1300020330 ? ? EMDB EMD-30913 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-02-10 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_type 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' em_3d_fitting_list 6 2 'Structure model' pdbx_initial_refinement_model 7 2 'Structure model' pdbx_struct_oper_list 8 2 'Structure model' refine # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_type.pdbx_N_electrons' 2 2 'Structure model' '_atom_type.pdbx_scat_Z' 3 2 'Structure model' '_database_2.pdbx_DOI' 4 2 'Structure model' '_database_2.pdbx_database_accession' 5 2 'Structure model' '_em_3d_fitting_list.accession_code' 6 2 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 7 2 'Structure model' '_em_3d_fitting_list.source_name' 8 2 'Structure model' '_em_3d_fitting_list.type' 9 2 'Structure model' '_pdbx_struct_oper_list.name' 10 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 11 2 'Structure model' '_pdbx_struct_oper_list.type' 12 2 'Structure model' '_refine.ls_d_res_high' 13 2 'Structure model' '_refine.ls_d_res_low' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DY0 _pdbx_database_status.recvd_initial_deposition_date 2021-01-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '1.93 A structure of streptavidin' _pdbx_database_related.db_id EMD-30913 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hiraizumi, M.' 1 ? 'Yamashita, K.' 2 ? 'Nishizawa, T.' 3 ? 'Kikkawa, M.' 4 ? 'Nureki, O.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title '1.93 A cryo-EM structure of streptavidin' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Hiraizumi, M.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Streptavidin 18849.672 1 ? ? ? ? 2 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 LYS n 1 4 ILE n 1 5 VAL n 1 6 VAL n 1 7 ALA n 1 8 ALA n 1 9 ILE n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 LEU n 1 14 THR n 1 15 THR n 1 16 VAL n 1 17 SER n 1 18 ILE n 1 19 THR n 1 20 ALA n 1 21 SER n 1 22 ALA n 1 23 SER n 1 24 ALA n 1 25 ASP n 1 26 PRO n 1 27 SER n 1 28 LYS n 1 29 ASP n 1 30 SER n 1 31 LYS n 1 32 ALA n 1 33 GLN n 1 34 VAL n 1 35 SER n 1 36 ALA n 1 37 ALA n 1 38 GLU n 1 39 ALA n 1 40 GLY n 1 41 ILE n 1 42 THR n 1 43 GLY n 1 44 THR n 1 45 TRP n 1 46 TYR n 1 47 ASN n 1 48 GLN n 1 49 LEU n 1 50 GLY n 1 51 SER n 1 52 THR n 1 53 PHE n 1 54 ILE n 1 55 VAL n 1 56 THR n 1 57 ALA n 1 58 GLY n 1 59 ALA n 1 60 ASP n 1 61 GLY n 1 62 ALA n 1 63 LEU n 1 64 THR n 1 65 GLY n 1 66 THR n 1 67 TYR n 1 68 GLU n 1 69 SER n 1 70 ALA n 1 71 VAL n 1 72 GLY n 1 73 ASN n 1 74 ALA n 1 75 GLU n 1 76 SER n 1 77 ARG n 1 78 TYR n 1 79 VAL n 1 80 LEU n 1 81 THR n 1 82 GLY n 1 83 ARG n 1 84 TYR n 1 85 ASP n 1 86 SER n 1 87 ALA n 1 88 PRO n 1 89 ALA n 1 90 THR n 1 91 ASP n 1 92 GLY n 1 93 SER n 1 94 GLY n 1 95 THR n 1 96 ALA n 1 97 LEU n 1 98 GLY n 1 99 TRP n 1 100 THR n 1 101 VAL n 1 102 ALA n 1 103 TRP n 1 104 LYS n 1 105 ASN n 1 106 ASN n 1 107 TYR n 1 108 ARG n 1 109 ASN n 1 110 ALA n 1 111 HIS n 1 112 SER n 1 113 ALA n 1 114 THR n 1 115 THR n 1 116 TRP n 1 117 SER n 1 118 GLY n 1 119 GLN n 1 120 TYR n 1 121 VAL n 1 122 GLY n 1 123 GLY n 1 124 ALA n 1 125 GLU n 1 126 ALA n 1 127 ARG n 1 128 ILE n 1 129 ASN n 1 130 THR n 1 131 GLN n 1 132 TRP n 1 133 LEU n 1 134 LEU n 1 135 THR n 1 136 SER n 1 137 GLY n 1 138 THR n 1 139 THR n 1 140 GLU n 1 141 ALA n 1 142 ASN n 1 143 ALA n 1 144 TRP n 1 145 LYS n 1 146 SER n 1 147 THR n 1 148 LEU n 1 149 VAL n 1 150 GLY n 1 151 HIS n 1 152 ASP n 1 153 THR n 1 154 PHE n 1 155 THR n 1 156 LYS n 1 157 VAL n 1 158 LYS n 1 159 PRO n 1 160 SER n 1 161 ALA n 1 162 ALA n 1 163 SER n 1 164 ILE n 1 165 ASP n 1 166 ALA n 1 167 ALA n 1 168 LYS n 1 169 LYS n 1 170 ALA n 1 171 GLY n 1 172 VAL n 1 173 ASN n 1 174 ASN n 1 175 GLY n 1 176 ASN n 1 177 PRO n 1 178 LEU n 1 179 ASP n 1 180 ALA n 1 181 VAL n 1 182 GLN n 1 183 GLN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 183 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces avidinii' _entity_src_nat.pdbx_ncbi_taxonomy_id 1895 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -23 ? ? ? A . n A 1 2 ARG 2 -22 ? ? ? A . n A 1 3 LYS 3 -21 ? ? ? A . n A 1 4 ILE 4 -20 ? ? ? A . n A 1 5 VAL 5 -19 ? ? ? A . n A 1 6 VAL 6 -18 ? ? ? A . n A 1 7 ALA 7 -17 ? ? ? A . n A 1 8 ALA 8 -16 ? ? ? A . n A 1 9 ILE 9 -15 ? ? ? A . n A 1 10 ALA 10 -14 ? ? ? A . n A 1 11 VAL 11 -13 ? ? ? A . n A 1 12 SER 12 -12 ? ? ? A . n A 1 13 LEU 13 -11 ? ? ? A . n A 1 14 THR 14 -10 ? ? ? A . n A 1 15 THR 15 -9 ? ? ? A . n A 1 16 VAL 16 -8 ? ? ? A . n A 1 17 SER 17 -7 ? ? ? A . n A 1 18 ILE 18 -6 ? ? ? A . n A 1 19 THR 19 -5 ? ? ? A . n A 1 20 ALA 20 -4 ? ? ? A . n A 1 21 SER 21 -3 ? ? ? A . n A 1 22 ALA 22 -2 ? ? ? A . n A 1 23 SER 23 -1 ? ? ? A . n A 1 24 ALA 24 0 ? ? ? A . n A 1 25 ASP 25 1 ? ? ? A . n A 1 26 PRO 26 2 ? ? ? A . n A 1 27 SER 27 3 ? ? ? A . n A 1 28 LYS 28 4 ? ? ? A . n A 1 29 ASP 29 5 ? ? ? A . n A 1 30 SER 30 6 ? ? ? A . n A 1 31 LYS 31 7 ? ? ? A . n A 1 32 ALA 32 8 ? ? ? A . n A 1 33 GLN 33 9 ? ? ? A . n A 1 34 VAL 34 10 ? ? ? A . n A 1 35 SER 35 11 ? ? ? A . n A 1 36 ALA 36 12 ? ? ? A . n A 1 37 ALA 37 13 ? ? ? A . n A 1 38 GLU 38 14 ? ? ? A . n A 1 39 ALA 39 15 ? ? ? A . n A 1 40 GLY 40 16 16 GLY GLY A . n A 1 41 ILE 41 17 17 ILE ILE A . n A 1 42 THR 42 18 18 THR THR A . n A 1 43 GLY 43 19 19 GLY GLY A . n A 1 44 THR 44 20 20 THR THR A . n A 1 45 TRP 45 21 21 TRP TRP A . n A 1 46 TYR 46 22 22 TYR TYR A . n A 1 47 ASN 47 23 23 ASN ASN A . n A 1 48 GLN 48 24 24 GLN GLN A . n A 1 49 LEU 49 25 25 LEU LEU A . n A 1 50 GLY 50 26 26 GLY GLY A . n A 1 51 SER 51 27 27 SER SER A . n A 1 52 THR 52 28 28 THR THR A . n A 1 53 PHE 53 29 29 PHE PHE A . n A 1 54 ILE 54 30 30 ILE ILE A . n A 1 55 VAL 55 31 31 VAL VAL A . n A 1 56 THR 56 32 32 THR THR A . n A 1 57 ALA 57 33 33 ALA ALA A . n A 1 58 GLY 58 34 34 GLY GLY A . n A 1 59 ALA 59 35 35 ALA ALA A . n A 1 60 ASP 60 36 36 ASP ASP A . n A 1 61 GLY 61 37 37 GLY GLY A . n A 1 62 ALA 62 38 38 ALA ALA A . n A 1 63 LEU 63 39 39 LEU LEU A . n A 1 64 THR 64 40 40 THR THR A . n A 1 65 GLY 65 41 41 GLY GLY A . n A 1 66 THR 66 42 42 THR THR A . n A 1 67 TYR 67 43 43 TYR TYR A . n A 1 68 GLU 68 44 44 GLU GLU A . n A 1 69 SER 69 45 45 SER SER A . n A 1 70 ALA 70 46 46 ALA ALA A . n A 1 71 VAL 71 47 47 VAL VAL A . n A 1 72 GLY 72 48 48 GLY GLY A . n A 1 73 ASN 73 49 49 ASN ASN A . n A 1 74 ALA 74 50 50 ALA ALA A . n A 1 75 GLU 75 51 51 GLU GLU A . n A 1 76 SER 76 52 52 SER SER A . n A 1 77 ARG 77 53 53 ARG ARG A . n A 1 78 TYR 78 54 54 TYR TYR A . n A 1 79 VAL 79 55 55 VAL VAL A . n A 1 80 LEU 80 56 56 LEU LEU A . n A 1 81 THR 81 57 57 THR THR A . n A 1 82 GLY 82 58 58 GLY GLY A . n A 1 83 ARG 83 59 59 ARG ARG A . n A 1 84 TYR 84 60 60 TYR TYR A . n A 1 85 ASP 85 61 61 ASP ASP A . n A 1 86 SER 86 62 62 SER SER A . n A 1 87 ALA 87 63 63 ALA ALA A . n A 1 88 PRO 88 64 64 PRO PRO A . n A 1 89 ALA 89 65 65 ALA ALA A . n A 1 90 THR 90 66 66 THR THR A . n A 1 91 ASP 91 67 67 ASP ASP A . n A 1 92 GLY 92 68 68 GLY GLY A . n A 1 93 SER 93 69 69 SER SER A . n A 1 94 GLY 94 70 70 GLY GLY A . n A 1 95 THR 95 71 71 THR THR A . n A 1 96 ALA 96 72 72 ALA ALA A . n A 1 97 LEU 97 73 73 LEU LEU A . n A 1 98 GLY 98 74 74 GLY GLY A . n A 1 99 TRP 99 75 75 TRP TRP A . n A 1 100 THR 100 76 76 THR THR A . n A 1 101 VAL 101 77 77 VAL VAL A . n A 1 102 ALA 102 78 78 ALA ALA A . n A 1 103 TRP 103 79 79 TRP TRP A . n A 1 104 LYS 104 80 80 LYS LYS A . n A 1 105 ASN 105 81 81 ASN ASN A . n A 1 106 ASN 106 82 82 ASN ASN A . n A 1 107 TYR 107 83 83 TYR TYR A . n A 1 108 ARG 108 84 84 ARG ARG A . n A 1 109 ASN 109 85 85 ASN ASN A . n A 1 110 ALA 110 86 86 ALA ALA A . n A 1 111 HIS 111 87 87 HIS HIS A . n A 1 112 SER 112 88 88 SER SER A . n A 1 113 ALA 113 89 89 ALA ALA A . n A 1 114 THR 114 90 90 THR THR A . n A 1 115 THR 115 91 91 THR THR A . n A 1 116 TRP 116 92 92 TRP TRP A . n A 1 117 SER 117 93 93 SER SER A . n A 1 118 GLY 118 94 94 GLY GLY A . n A 1 119 GLN 119 95 95 GLN GLN A . n A 1 120 TYR 120 96 96 TYR TYR A . n A 1 121 VAL 121 97 97 VAL VAL A . n A 1 122 GLY 122 98 98 GLY GLY A . n A 1 123 GLY 123 99 99 GLY GLY A . n A 1 124 ALA 124 100 100 ALA ALA A . n A 1 125 GLU 125 101 101 GLU GLU A . n A 1 126 ALA 126 102 102 ALA ALA A . n A 1 127 ARG 127 103 103 ARG ARG A . n A 1 128 ILE 128 104 104 ILE ILE A . n A 1 129 ASN 129 105 105 ASN ASN A . n A 1 130 THR 130 106 106 THR THR A . n A 1 131 GLN 131 107 107 GLN GLN A . n A 1 132 TRP 132 108 108 TRP TRP A . n A 1 133 LEU 133 109 109 LEU LEU A . n A 1 134 LEU 134 110 110 LEU LEU A . n A 1 135 THR 135 111 111 THR THR A . n A 1 136 SER 136 112 112 SER SER A . n A 1 137 GLY 137 113 113 GLY GLY A . n A 1 138 THR 138 114 114 THR THR A . n A 1 139 THR 139 115 115 THR THR A . n A 1 140 GLU 140 116 116 GLU GLU A . n A 1 141 ALA 141 117 117 ALA ALA A . n A 1 142 ASN 142 118 118 ASN ASN A . n A 1 143 ALA 143 119 119 ALA ALA A . n A 1 144 TRP 144 120 120 TRP TRP A . n A 1 145 LYS 145 121 121 LYS LYS A . n A 1 146 SER 146 122 122 SER SER A . n A 1 147 THR 147 123 123 THR THR A . n A 1 148 LEU 148 124 124 LEU LEU A . n A 1 149 VAL 149 125 125 VAL VAL A . n A 1 150 GLY 150 126 126 GLY GLY A . n A 1 151 HIS 151 127 127 HIS HIS A . n A 1 152 ASP 152 128 128 ASP ASP A . n A 1 153 THR 153 129 129 THR THR A . n A 1 154 PHE 154 130 130 PHE PHE A . n A 1 155 THR 155 131 131 THR THR A . n A 1 156 LYS 156 132 132 LYS LYS A . n A 1 157 VAL 157 133 133 VAL VAL A . n A 1 158 LYS 158 134 134 LYS LYS A . n A 1 159 PRO 159 135 ? ? ? A . n A 1 160 SER 160 136 ? ? ? A . n A 1 161 ALA 161 137 ? ? ? A . n A 1 162 ALA 162 138 ? ? ? A . n A 1 163 SER 163 139 ? ? ? A . n A 1 164 ILE 164 140 ? ? ? A . n A 1 165 ASP 165 141 ? ? ? A . n A 1 166 ALA 166 142 ? ? ? A . n A 1 167 ALA 167 143 ? ? ? A . n A 1 168 LYS 168 144 ? ? ? A . n A 1 169 LYS 169 145 ? ? ? A . n A 1 170 ALA 170 146 ? ? ? A . n A 1 171 GLY 171 147 ? ? ? A . n A 1 172 VAL 172 148 ? ? ? A . n A 1 173 ASN 173 149 ? ? ? A . n A 1 174 ASN 174 150 ? ? ? A . n A 1 175 GLY 175 151 ? ? ? A . n A 1 176 ASN 176 152 ? ? ? A . n A 1 177 PRO 177 153 ? ? ? A . n A 1 178 LEU 178 154 ? ? ? A . n A 1 179 ASP 179 155 ? ? ? A . n A 1 180 ALA 180 156 ? ? ? A . n A 1 181 VAL 181 157 ? ? ? A . n A 1 182 GLN 182 158 ? ? ? A . n A 1 183 GLN 183 159 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 216 HOH HOH A . B 2 HOH 2 202 218 HOH HOH A . B 2 HOH 3 203 201 HOH HOH A . B 2 HOH 4 204 210 HOH HOH A . B 2 HOH 5 205 203 HOH HOH A . B 2 HOH 6 206 214 HOH HOH A . B 2 HOH 7 207 221 HOH HOH A . B 2 HOH 8 208 209 HOH HOH A . B 2 HOH 9 209 204 HOH HOH A . B 2 HOH 10 210 224 HOH HOH A . B 2 HOH 11 211 217 HOH HOH A . B 2 HOH 12 212 213 HOH HOH A . B 2 HOH 13 213 212 HOH HOH A . B 2 HOH 14 214 211 HOH HOH A . B 2 HOH 15 215 205 HOH HOH A . B 2 HOH 16 216 208 HOH HOH A . B 2 HOH 17 217 230 HOH HOH A . B 2 HOH 18 218 227 HOH HOH A . B 2 HOH 19 219 219 HOH HOH A . B 2 HOH 20 220 222 HOH HOH A . B 2 HOH 21 221 223 HOH HOH A . B 2 HOH 22 222 228 HOH HOH A . B 2 HOH 23 223 229 HOH HOH A . B 2 HOH 24 224 232 HOH HOH A . B 2 HOH 25 225 225 HOH HOH A . B 2 HOH 26 226 206 HOH HOH A . B 2 HOH 27 227 231 HOH HOH A . B 2 HOH 28 228 226 HOH HOH A . B 2 HOH 29 229 220 HOH HOH A . B 2 HOH 30 230 215 HOH HOH A . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0272 _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7DY0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DY0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] -0.140 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.308 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -0.167 _refine.B_iso_max ? _refine.B_iso_mean 49.861 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.814 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DY0 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.93 _refine.ls_d_res_low 1.93 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work 74239 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.000 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all 0.349 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.3489 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work 0.349 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.077 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 6.443 _refine.overall_SU_ML 0.146 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall 0.6654 _refine.pdbx_average_fsc_work 0.6654 _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.012 0.012 913 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.002 0.018 803 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.696 1.641 1249 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 1.446 1.578 1834 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 8.244 5.000 118 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 27.792 22.381 42 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 15.777 15.000 124 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 24.320 15.000 4 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.090 0.200 125 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.009 0.020 1073 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.002 0.020 231 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? 0.166 0.200 270 ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.178 0.200 1416 ? r_symmetry_nbd_other ? ? 'ELECTRON MICROSCOPY' ? 0.169 0.200 876 ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? 0.080 0.200 986 ? r_symmetry_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? 0.118 0.200 68 ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.218 0.200 10 ? r_symmetry_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.181 0.200 56 ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? 0.166 0.200 10 ? r_symmetry_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 5.257 5.067 475 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 5.262 5.054 474 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 9.031 7.590 592 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 9.025 7.605 593 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 5.519 5.480 438 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 5.513 5.502 439 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? 9.337 7.922 657 ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 9.330 7.943 658 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 18.084 94.079 4104 ? r_lrange_it ? ? 'ELECTRON MICROSCOPY' ? 18.071 93.938 4096 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON MICROSCOPY' 1.920 1.930 1056 . 0 1056 100.0000 . 0.540 . . . 0.540 . . . . . 0.540 . 100 . 0.148 . 'ELECTRON MICROSCOPY' 1.930 1.940 1164 . 0 1164 100.0000 . 0.563 . . . 0.563 . . . . . 0.563 . 100 . 0.210 . 'ELECTRON MICROSCOPY' 1.940 1.949 1076 . 0 1076 100.0000 . 0.546 . . . 0.546 . . . . . 0.546 . 100 . 0.236 . 'ELECTRON MICROSCOPY' 1.949 1.960 1126 . 0 1126 100.0000 . 0.552 . . . 0.552 . . . . . 0.552 . 100 . 0.224 . 'ELECTRON MICROSCOPY' 1.960 1.970 992 . 0 992 100.0000 . 0.604 . . . 0.604 . . . . . 0.604 . 100 . 0.215 . 'ELECTRON MICROSCOPY' 1.970 1.980 1103 . 0 1103 100.0000 . 0.606 . . . 0.606 . . . . . 0.606 . 100 . 0.264 . 'ELECTRON MICROSCOPY' 1.980 1.991 1148 . 0 1148 100.0000 . 0.581 . . . 0.581 . . . . . 0.581 . 100 . 0.252 . 'ELECTRON MICROSCOPY' 1.991 2.002 1035 . 0 1035 100.0000 . 0.597 . . . 0.597 . . . . . 0.597 . 100 . 0.216 . 'ELECTRON MICROSCOPY' 2.002 2.013 1068 . 0 1068 100.0000 . 0.560 . . . 0.560 . . . . . 0.560 . 100 . 0.274 . 'ELECTRON MICROSCOPY' 2.013 2.024 1063 . 0 1063 100.0000 . 0.547 . . . 0.547 . . . . . 0.547 . 100 . 0.362 . 'ELECTRON MICROSCOPY' 2.024 2.035 1048 . 0 1048 100.0000 . 0.556 . . . 0.556 . . . . . 0.556 . 100 . 0.259 . 'ELECTRON MICROSCOPY' 2.035 2.047 1035 . 0 1035 100.0000 . 0.509 . . . 0.509 . . . . . 0.509 . 100 . 0.354 . 'ELECTRON MICROSCOPY' 2.047 2.058 1030 . 0 1030 100.0000 . 0.525 . . . 0.525 . . . . . 0.525 . 100 . 0.305 . 'ELECTRON MICROSCOPY' 2.058 2.070 1065 . 0 1065 100.0000 . 0.564 . . . 0.564 . . . . . 0.564 . 100 . 0.323 . 'ELECTRON MICROSCOPY' 2.070 2.082 1018 . 0 1018 100.0000 . 0.558 . . . 0.558 . . . . . 0.558 . 100 . 0.349 . 'ELECTRON MICROSCOPY' 2.082 2.095 1029 . 0 1029 100.0000 . 0.472 . . . 0.472 . . . . . 0.472 . 100 . 0.525 . 'ELECTRON MICROSCOPY' 2.095 2.107 1033 . 0 1033 100.0000 . 0.511 . . . 0.511 . . . . . 0.511 . 100 . 0.347 . 'ELECTRON MICROSCOPY' 2.107 2.120 944 . 0 944 100.0000 . 0.533 . . . 0.533 . . . . . 0.533 . 100 . 0.500 . 'ELECTRON MICROSCOPY' 2.120 2.133 1015 . 0 1015 100.0000 . 0.473 . . . 0.473 . . . . . 0.473 . 100 . 0.512 . 'ELECTRON MICROSCOPY' 2.133 2.146 1046 . 0 1046 100.0000 . 0.509 . . . 0.509 . . . . . 0.509 . 100 . 0.536 . 'ELECTRON MICROSCOPY' 2.146 2.160 982 . 0 982 100.0000 . 0.512 . . . 0.512 . . . . . 0.512 . 100 . 0.511 . 'ELECTRON MICROSCOPY' 2.160 2.174 997 . 0 997 100.0000 . 0.534 . . . 0.534 . . . . . 0.534 . 100 . 0.531 . 'ELECTRON MICROSCOPY' 2.174 2.188 1001 . 0 1001 100.0000 . 0.547 . . . 0.547 . . . . . 0.547 . 100 . 0.526 . 'ELECTRON MICROSCOPY' 2.188 2.202 961 . 0 961 100.0000 . 0.463 . . . 0.463 . . . . . 0.463 . 100 . 0.542 . 'ELECTRON MICROSCOPY' 2.202 2.217 944 . 0 944 100.0000 . 0.472 . . . 0.472 . . . . . 0.472 . 100 . 0.626 . 'ELECTRON MICROSCOPY' 2.217 2.232 952 . 0 952 100.0000 . 0.487 . . . 0.487 . . . . . 0.487 . 100 . 0.584 . 'ELECTRON MICROSCOPY' 2.232 2.247 1003 . 0 1003 100.0000 . 0.468 . . . 0.468 . . . . . 0.468 . 100 . 0.634 . 'ELECTRON MICROSCOPY' 2.247 2.262 951 . 0 951 100.0000 . 0.488 . . . 0.488 . . . . . 0.488 . 100 . 0.577 . 'ELECTRON MICROSCOPY' 2.262 2.278 923 . 0 923 100.0000 . 0.515 . . . 0.515 . . . . . 0.515 . 100 . 0.527 . 'ELECTRON MICROSCOPY' 2.278 2.294 898 . 0 898 100.0000 . 0.480 . . . 0.480 . . . . . 0.480 . 100 . 0.593 . 'ELECTRON MICROSCOPY' 2.294 2.311 930 . 0 930 100.0000 . 0.457 . . . 0.457 . . . . . 0.457 . 100 . 0.627 . 'ELECTRON MICROSCOPY' 2.311 2.328 968 . 0 968 100.0000 . 0.427 . . . 0.427 . . . . . 0.427 . 100 . 0.657 . 'ELECTRON MICROSCOPY' 2.328 2.345 879 . 0 879 100.0000 . 0.454 . . . 0.454 . . . . . 0.454 . 100 . 0.638 . 'ELECTRON MICROSCOPY' 2.345 2.363 890 . 0 890 100.0000 . 0.475 . . . 0.475 . . . . . 0.475 . 100 . 0.654 . 'ELECTRON MICROSCOPY' 2.363 2.381 926 . 0 926 100.0000 . 0.455 . . . 0.455 . . . . . 0.455 . 100 . 0.619 . 'ELECTRON MICROSCOPY' 2.381 2.400 870 . 0 870 100.0000 . 0.422 . . . 0.422 . . . . . 0.422 . 100 . 0.712 . 'ELECTRON MICROSCOPY' 2.400 2.418 898 . 0 898 100.0000 . 0.455 . . . 0.455 . . . . . 0.455 . 100 . 0.677 . 'ELECTRON MICROSCOPY' 2.418 2.438 933 . 0 933 100.0000 . 0.406 . . . 0.406 . . . . . 0.406 . 100 . 0.718 . 'ELECTRON MICROSCOPY' 2.438 2.458 836 . 0 836 100.0000 . 0.406 . . . 0.406 . . . . . 0.406 . 100 . 0.745 . 'ELECTRON MICROSCOPY' 2.458 2.478 830 . 0 830 100.0000 . 0.414 . . . 0.414 . . . . . 0.414 . 100 . 0.758 . 'ELECTRON MICROSCOPY' 2.478 2.499 900 . 0 900 100.0000 . 0.355 . . . 0.355 . . . . . 0.355 . 100 . 0.781 . 'ELECTRON MICROSCOPY' 2.499 2.520 851 . 0 851 100.0000 . 0.353 . . . 0.353 . . . . . 0.353 . 100 . 0.750 . 'ELECTRON MICROSCOPY' 2.520 2.542 872 . 0 872 100.0000 . 0.378 . . . 0.378 . . . . . 0.378 . 100 . 0.763 . 'ELECTRON MICROSCOPY' 2.542 2.565 800 . 0 800 100.0000 . 0.361 . . . 0.361 . . . . . 0.361 . 100 . 0.814 . 'ELECTRON MICROSCOPY' 2.565 2.588 816 . 0 816 100.0000 . 0.348 . . . 0.348 . . . . . 0.348 . 100 . 0.818 . 'ELECTRON MICROSCOPY' 2.588 2.612 842 . 0 842 100.0000 . 0.355 . . . 0.355 . . . . . 0.355 . 100 . 0.805 . 'ELECTRON MICROSCOPY' 2.612 2.636 820 . 0 820 100.0000 . 0.331 . . . 0.331 . . . . . 0.331 . 100 . 0.828 . 'ELECTRON MICROSCOPY' 2.636 2.662 781 . 0 781 100.0000 . 0.320 . . . 0.320 . . . . . 0.320 . 100 . 0.836 . 'ELECTRON MICROSCOPY' 2.662 2.688 796 . 0 796 100.0000 . 0.355 . . . 0.355 . . . . . 0.355 . 100 . 0.827 . 'ELECTRON MICROSCOPY' 2.688 2.714 826 . 0 826 100.0000 . 0.335 . . . 0.335 . . . . . 0.335 . 100 . 0.833 . 'ELECTRON MICROSCOPY' 2.714 2.742 753 . 0 753 100.0000 . 0.296 . . . 0.296 . . . . . 0.296 . 100 . 0.875 . 'ELECTRON MICROSCOPY' 2.742 2.770 789 . 0 789 100.0000 . 0.300 . . . 0.300 . . . . . 0.300 . 100 . 0.881 . 'ELECTRON MICROSCOPY' 2.770 2.799 773 . 0 773 100.0000 . 0.339 . . . 0.339 . . . . . 0.339 . 100 . 0.847 . 'ELECTRON MICROSCOPY' 2.799 2.830 758 . 0 758 100.0000 . 0.288 . . . 0.288 . . . . . 0.288 . 100 . 0.901 . 'ELECTRON MICROSCOPY' 2.830 2.861 723 . 0 723 100.0000 . 0.270 . . . 0.270 . . . . . 0.270 . 100 . 0.907 . 'ELECTRON MICROSCOPY' 2.861 2.893 765 . 0 765 100.0000 . 0.281 . . . 0.281 . . . . . 0.281 . 100 . 0.913 . 'ELECTRON MICROSCOPY' 2.893 2.926 747 . 0 747 100.0000 . 0.260 . . . 0.260 . . . . . 0.260 . 100 . 0.916 . 'ELECTRON MICROSCOPY' 2.926 2.961 709 . 0 709 100.0000 . 0.234 . . . 0.234 . . . . . 0.234 . 100 . 0.948 . 'ELECTRON MICROSCOPY' 2.961 2.997 722 . 0 722 100.0000 . 0.249 . . . 0.249 . . . . . 0.249 . 100 . 0.937 . 'ELECTRON MICROSCOPY' 2.997 3.034 707 . 0 707 100.0000 . 0.239 . . . 0.239 . . . . . 0.239 . 100 . 0.950 . 'ELECTRON MICROSCOPY' 3.034 3.073 712 . 0 712 100.0000 . 0.248 . . . 0.248 . . . . . 0.248 . 100 . 0.941 . 'ELECTRON MICROSCOPY' 3.073 3.113 674 . 0 674 100.0000 . 0.241 . . . 0.241 . . . . . 0.241 . 100 . 0.940 . 'ELECTRON MICROSCOPY' 3.113 3.154 680 . 0 680 100.0000 . 0.232 . . . 0.232 . . . . . 0.232 . 100 . 0.938 . 'ELECTRON MICROSCOPY' 3.154 3.198 695 . 0 695 100.0000 . 0.246 . . . 0.246 . . . . . 0.246 . 100 . 0.944 . 'ELECTRON MICROSCOPY' 3.198 3.243 675 . 0 675 100.0000 . 0.229 . . . 0.229 . . . . . 0.229 . 100 . 0.940 . 'ELECTRON MICROSCOPY' 3.243 3.290 621 . 0 621 100.0000 . 0.242 . . . 0.242 . . . . . 0.242 . 100 . 0.945 . 'ELECTRON MICROSCOPY' 3.290 3.340 659 . 0 659 100.0000 . 0.232 . . . 0.232 . . . . . 0.232 . 100 . 0.950 . 'ELECTRON MICROSCOPY' 3.340 3.391 616 . 0 616 100.0000 . 0.271 . . . 0.271 . . . . . 0.271 . 100 . 0.941 . 'ELECTRON MICROSCOPY' 3.391 3.445 660 . 0 660 100.0000 . 0.231 . . . 0.231 . . . . . 0.231 . 100 . 0.948 . 'ELECTRON MICROSCOPY' 3.445 3.502 572 . 0 572 100.0000 . 0.221 . . . 0.221 . . . . . 0.221 . 100 . 0.956 . 'ELECTRON MICROSCOPY' 3.502 3.562 637 . 0 637 100.0000 . 0.243 . . . 0.243 . . . . . 0.243 . 100 . 0.956 . 'ELECTRON MICROSCOPY' 3.562 3.625 549 . 0 549 100.0000 . 0.212 . . . 0.212 . . . . . 0.212 . 100 . 0.959 . 'ELECTRON MICROSCOPY' 3.625 3.691 629 . 0 629 100.0000 . 0.216 . . . 0.216 . . . . . 0.216 . 100 . 0.955 . 'ELECTRON MICROSCOPY' 3.691 3.761 569 . 0 569 100.0000 . 0.203 . . . 0.203 . . . . . 0.203 . 100 . 0.966 . 'ELECTRON MICROSCOPY' 3.761 3.835 531 . 0 531 100.0000 . 0.202 . . . 0.202 . . . . . 0.202 . 100 . 0.960 . 'ELECTRON MICROSCOPY' 3.835 3.914 597 . 0 597 100.0000 . 0.211 . . . 0.211 . . . . . 0.211 . 100 . 0.963 . 'ELECTRON MICROSCOPY' 3.914 3.998 503 . 0 503 100.0000 . 0.195 . . . 0.195 . . . . . 0.195 . 100 . 0.969 . 'ELECTRON MICROSCOPY' 3.998 4.088 543 . 0 543 100.0000 . 0.252 . . . 0.252 . . . . . 0.252 . 100 . 0.948 . 'ELECTRON MICROSCOPY' 4.088 4.184 535 . 0 535 100.0000 . 0.219 . . . 0.219 . . . . . 0.219 . 100 . 0.960 . 'ELECTRON MICROSCOPY' 4.184 4.286 490 . 0 490 100.0000 . 0.236 . . . 0.236 . . . . . 0.236 . 100 . 0.963 . 'ELECTRON MICROSCOPY' 4.286 4.397 486 . 0 486 100.0000 . 0.215 . . . 0.215 . . . . . 0.215 . 100 . 0.963 . 'ELECTRON MICROSCOPY' 4.397 4.517 508 . 0 508 100.0000 . 0.228 . . . 0.228 . . . . . 0.228 . 100 . 0.958 . 'ELECTRON MICROSCOPY' 4.517 4.648 437 . 0 437 100.0000 . 0.205 . . . 0.205 . . . . . 0.205 . 100 . 0.968 . 'ELECTRON MICROSCOPY' 4.648 4.790 460 . 0 460 100.0000 . 0.187 . . . 0.187 . . . . . 0.187 . 100 . 0.969 . 'ELECTRON MICROSCOPY' 4.790 4.946 447 . 0 447 100.0000 . 0.189 . . . 0.189 . . . . . 0.189 . 100 . 0.962 . 'ELECTRON MICROSCOPY' 4.946 5.119 416 . 0 416 100.0000 . 0.195 . . . 0.195 . . . . . 0.195 . 100 . 0.958 . 'ELECTRON MICROSCOPY' 5.119 5.311 429 . 0 429 100.0000 . 0.226 . . . 0.226 . . . . . 0.226 . 100 . 0.939 . 'ELECTRON MICROSCOPY' 5.311 5.527 386 . 0 386 100.0000 . 0.275 . . . 0.275 . . . . . 0.275 . 100 . 0.930 . 'ELECTRON MICROSCOPY' 5.527 5.771 400 . 0 400 100.0000 . 0.309 . . . 0.309 . . . . . 0.309 . 100 . 0.929 . 'ELECTRON MICROSCOPY' 5.771 6.050 331 . 0 331 100.0000 . 0.381 . . . 0.381 . . . . . 0.381 . 100 . 0.907 . 'ELECTRON MICROSCOPY' 6.050 6.374 350 . 0 350 100.0000 . 0.352 . . . 0.352 . . . . . 0.352 . 100 . 0.875 . 'ELECTRON MICROSCOPY' 6.374 6.757 319 . 0 319 100.0000 . 0.317 . . . 0.317 . . . . . 0.317 . 100 . 0.919 . 'ELECTRON MICROSCOPY' 6.757 7.219 306 . 0 306 100.0000 . 0.466 . . . 0.466 . . . . . 0.466 . 100 . 0.877 . 'ELECTRON MICROSCOPY' 7.219 7.790 300 . 0 300 100.0000 . 0.415 . . . 0.415 . . . . . 0.415 . 100 . 0.853 . 'ELECTRON MICROSCOPY' 7.790 8.522 251 . 0 251 100.0000 . 0.515 . . . 0.515 . . . . . 0.515 . 100 . 0.849 . 'ELECTRON MICROSCOPY' 8.522 9.510 235 . 0 235 100.0000 . 0.559 . . . 0.559 . . . . . 0.559 . 100 . 0.876 . 'ELECTRON MICROSCOPY' 9.510 10.945 215 . 0 215 100.0000 . 0.628 . . . 0.628 . . . . . 0.628 . 100 . 0.884 . 'ELECTRON MICROSCOPY' 10.945 13.319 179 . 0 179 100.0000 . 0.613 . . . 0.613 . . . . . 0.613 . 100 . 0.926 . 'ELECTRON MICROSCOPY' 13.319 18.485 140 . 0 140 100.0000 . 0.931 . . . 0.931 . . . . . 0.931 . 100 . 0.924 . 'ELECTRON MICROSCOPY' 18.485 68.000 80 . 0 80 100.0000 . 1.736 . . . 1.736 . . . . . 1.736 . 100 . 0.989 . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.vector[2] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 1 0 0 0 0 1 0 0 0 0 1 0 ? 2 generate -1 0 0 87.99963 0 -1 0 87.99963 0 0 1 0 ? 3 generate 1 0 0 0 0 -1 0 87.99963 0 0 -1 87.99963 ? 4 generate -1 0 0 87.99963 0 1 0 0 0 0 -1 87.99963 ? # _struct.entry_id 7DY0 _struct.title '1.93 A cryo-EM structure of streptavidin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DY0 _struct_keywords.text 'STREPTAVIDIN, CYTOSOLIC PROTEIN' _struct_keywords.pdbx_keywords 'CYTOSOLIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAV_STRAV _struct_ref.pdbx_db_accession P22629 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7DY0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22629 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 183 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -23 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? tetrameric 4 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-4)' A,B 2 1 A,B 3 P A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 -1.00000000 0.00000000 43.99981 0.00000000 0.00000000 1.00000000 -43.99981 -1.00000000 0.00000000 0.00000000 43.99981 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 87.99962 0.00000000 0.00000000 -1.00000000 87.99962 3 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 87.99962 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 87.99962 4 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 87.99962 0.00000000 -1.00000000 0.00000000 87.99962 0.00000000 0.00000000 1.00000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 73 ? GLU A 75 ? ASN A 49 GLU A 51 5 ? 3 HELX_P HELX_P2 AA2 THR A 139 ? LYS A 145 ? THR A 115 LYS A 121 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 43 ? ASN A 47 ? GLY A 19 ASN A 23 AA1 2 THR A 52 ? ALA A 57 ? THR A 28 ALA A 33 AA1 3 ALA A 62 ? GLU A 68 ? ALA A 38 GLU A 44 AA1 4 ARG A 77 ? TYR A 84 ? ARG A 53 TYR A 60 AA1 5 THR A 95 ? LYS A 104 ? THR A 71 LYS A 80 AA1 6 ASN A 109 ? VAL A 121 ? ASN A 85 VAL A 97 AA1 7 ARG A 127 ? SER A 136 ? ARG A 103 SER A 112 AA1 8 THR A 147 ? THR A 155 ? THR A 123 THR A 131 AA1 9 GLY A 43 ? ASN A 47 ? GLY A 19 ASN A 23 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 45 ? N TRP A 21 O PHE A 53 ? O PHE A 29 AA1 2 3 N THR A 52 ? N THR A 28 O GLU A 68 ? O GLU A 44 AA1 3 4 N TYR A 67 ? N TYR A 43 O TYR A 78 ? O TYR A 54 AA1 4 5 N THR A 81 ? N THR A 57 O THR A 100 ? O THR A 76 AA1 5 6 N LEU A 97 ? N LEU A 73 O GLY A 118 ? O GLY A 94 AA1 6 7 N VAL A 121 ? N VAL A 97 O ARG A 127 ? O ARG A 103 AA1 7 8 N LEU A 134 ? N LEU A 110 O LEU A 148 ? O LEU A 124 AA1 8 9 O THR A 155 ? O THR A 131 N TYR A 46 ? N TYR A 22 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 46 ? ? -47.66 -19.56 2 1 ASP A 67 ? ? -149.89 15.15 3 1 ALA A 100 ? ? -60.78 -72.24 # _pdbx_point_symmetry.entry_id 7DY0 _pdbx_point_symmetry.Schoenflies_symbol D _pdbx_point_symmetry.circular_symmetry 2 # _em_3d_fitting.entry_id 7DY0 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id M _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 5N7X _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 5N7X # _em_3d_reconstruction.entry_id 7DY0 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 19045 _em_3d_reconstruction.resolution 1.93 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Streptavidin _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7DY0 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'coated grid with pentylamine before glow discharge' _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7DY0 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7DY0 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7DY0 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry D2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -23 ? A MET 1 2 1 Y 1 A ARG -22 ? A ARG 2 3 1 Y 1 A LYS -21 ? A LYS 3 4 1 Y 1 A ILE -20 ? A ILE 4 5 1 Y 1 A VAL -19 ? A VAL 5 6 1 Y 1 A VAL -18 ? A VAL 6 7 1 Y 1 A ALA -17 ? A ALA 7 8 1 Y 1 A ALA -16 ? A ALA 8 9 1 Y 1 A ILE -15 ? A ILE 9 10 1 Y 1 A ALA -14 ? A ALA 10 11 1 Y 1 A VAL -13 ? A VAL 11 12 1 Y 1 A SER -12 ? A SER 12 13 1 Y 1 A LEU -11 ? A LEU 13 14 1 Y 1 A THR -10 ? A THR 14 15 1 Y 1 A THR -9 ? A THR 15 16 1 Y 1 A VAL -8 ? A VAL 16 17 1 Y 1 A SER -7 ? A SER 17 18 1 Y 1 A ILE -6 ? A ILE 18 19 1 Y 1 A THR -5 ? A THR 19 20 1 Y 1 A ALA -4 ? A ALA 20 21 1 Y 1 A SER -3 ? A SER 21 22 1 Y 1 A ALA -2 ? A ALA 22 23 1 Y 1 A SER -1 ? A SER 23 24 1 Y 1 A ALA 0 ? A ALA 24 25 1 Y 1 A ASP 1 ? A ASP 25 26 1 Y 1 A PRO 2 ? A PRO 26 27 1 Y 1 A SER 3 ? A SER 27 28 1 Y 1 A LYS 4 ? A LYS 28 29 1 Y 1 A ASP 5 ? A ASP 29 30 1 Y 1 A SER 6 ? A SER 30 31 1 Y 1 A LYS 7 ? A LYS 31 32 1 Y 1 A ALA 8 ? A ALA 32 33 1 Y 1 A GLN 9 ? A GLN 33 34 1 Y 1 A VAL 10 ? A VAL 34 35 1 Y 1 A SER 11 ? A SER 35 36 1 Y 1 A ALA 12 ? A ALA 36 37 1 Y 1 A ALA 13 ? A ALA 37 38 1 Y 1 A GLU 14 ? A GLU 38 39 1 Y 1 A ALA 15 ? A ALA 39 40 1 Y 1 A PRO 135 ? A PRO 159 41 1 Y 1 A SER 136 ? A SER 160 42 1 Y 1 A ALA 137 ? A ALA 161 43 1 Y 1 A ALA 138 ? A ALA 162 44 1 Y 1 A SER 139 ? A SER 163 45 1 Y 1 A ILE 140 ? A ILE 164 46 1 Y 1 A ASP 141 ? A ASP 165 47 1 Y 1 A ALA 142 ? A ALA 166 48 1 Y 1 A ALA 143 ? A ALA 167 49 1 Y 1 A LYS 144 ? A LYS 168 50 1 Y 1 A LYS 145 ? A LYS 169 51 1 Y 1 A ALA 146 ? A ALA 170 52 1 Y 1 A GLY 147 ? A GLY 171 53 1 Y 1 A VAL 148 ? A VAL 172 54 1 Y 1 A ASN 149 ? A ASN 173 55 1 Y 1 A ASN 150 ? A ASN 174 56 1 Y 1 A GLY 151 ? A GLY 175 57 1 Y 1 A ASN 152 ? A ASN 176 58 1 Y 1 A PRO 153 ? A PRO 177 59 1 Y 1 A LEU 154 ? A LEU 178 60 1 Y 1 A ASP 155 ? A ASP 179 61 1 Y 1 A ALA 156 ? A ALA 180 62 1 Y 1 A VAL 157 ? A VAL 181 63 1 Y 1 A GLN 158 ? A GLN 182 64 1 Y 1 A GLN 159 ? A GLN 183 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1895 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Streptomyces avidinii' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 70 _em_image_recording.average_exposure_time 1.5 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 2277 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 15 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.1 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1.13 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? MOLREP ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'VOLUME SELECTION' ? ? ? 1 1 1 14 'SERIES ALIGNMENT' ? ? ? 1 1 1 15 'MOLECULAR REPLACEMENT' ? ? ? 1 1 1 16 'LATTICE DISTORTION CORRECTION' ? ? ? 1 1 1 17 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 18 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 19 'MODEL REFINEMENT' ? REFMAC 5.8.0272 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5N7X # _atom_sites.entry_id 7DY0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 # loop_