data_7DYC # _entry.id 7DYC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DYC pdb_00007dyc 10.2210/pdb7dyc/pdb WWPDB D_1300020410 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DYC _pdbx_database_status.recvd_initial_deposition_date 2021-01-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yagi, S.' 1 ? 'Tagami, S.' 2 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 143 ? 15998 16006 'Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.' 2021 ? 10.1021/jacs.1c05367 34559526 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Seven amino acid types suffice to reconstruct the core fold of RNA polymerase.' 2021 ? 10.1101/2021.02.22.432383 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yagi, S.' 1 ? primary 'Padhi, A.K.' 2 ? primary 'Vucinic, J.' 3 ? primary 'Barbe, S.' 4 ? primary 'Schiex, T.' 5 ? primary 'Nakagawa, R.' 6 0000-0002-6178-2945 primary 'Simoncini, D.' 7 ? primary 'Zhang, K.Y.J.' 8 0000-0002-9282-8045 primary 'Tagami, S.' 9 0000-0002-1720-3627 1 'Yagi, S.' 10 ? 1 'Padhi, A.K.' 11 ? 1 'Vucinic, J.' 12 ? 1 'Barbe, S.' 13 ? 1 'Schiex, T.' 14 ? 1 'Nakagawa, R.' 15 ? 1 'Simoncini, D.' 16 ? 1 'Zhang, K.Y.J.' 17 ? 1 'Tagami, S.' 18 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7DYC _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.278 _cell.length_a_esd ? _cell.length_b 52.278 _cell.length_b_esd ? _cell.length_c 146.731 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'mk2h_deltaMILPYS protein' 5124.123 4 ? ? ? ? 2 non-polymer syn D-MALATE 134.087 1 ? ? ? ? 3 non-polymer syn '(2S)-2-hydroxybutanedioic acid' 134.087 1 ? ? ? ? 4 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPMPGKKVVARVAEARAEDVGKRVVRVDKAERAKVGVKVGDVVEVKKV _entity_poly.pdbx_seq_one_letter_code_can GPMPGKKVVARVAEARAEDVGKRVVRVDKAERAKVGVKVGDVVEVKKV _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 MET n 1 4 PRO n 1 5 GLY n 1 6 LYS n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 ALA n 1 11 ARG n 1 12 VAL n 1 13 ALA n 1 14 GLU n 1 15 ALA n 1 16 ARG n 1 17 ALA n 1 18 GLU n 1 19 ASP n 1 20 VAL n 1 21 GLY n 1 22 LYS n 1 23 ARG n 1 24 VAL n 1 25 VAL n 1 26 ARG n 1 27 VAL n 1 28 ASP n 1 29 LYS n 1 30 ALA n 1 31 GLU n 1 32 ARG n 1 33 ALA n 1 34 LYS n 1 35 VAL n 1 36 GLY n 1 37 VAL n 1 38 LYS n 1 39 VAL n 1 40 GLY n 1 41 ASP n 1 42 VAL n 1 43 VAL n 1 44 GLU n 1 45 VAL n 1 46 LYS n 1 47 LYS n 1 48 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 48 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7DYC _struct_ref.pdbx_db_accession 7DYC _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7DYC A 1 ? 48 ? 7DYC -1 ? 46 ? -1 46 2 1 7DYC B 1 ? 48 ? 7DYC -1 ? 46 ? -1 46 3 1 7DYC C 1 ? 48 ? 7DYC -1 ? 46 ? -1 46 4 1 7DYC D 1 ? 48 ? 7DYC -1 ? 46 ? -1 46 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LMR non-polymer . '(2S)-2-hydroxybutanedioic acid' L-Malate 'C4 H6 O5' 134.087 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLT non-polymer . D-MALATE '(2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID' 'C4 H6 O5' 134.087 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DYC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2100 mM DL Malic acid pH 7.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-12-10 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7DYC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10931 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 21.19 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.17 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.44 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1638 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.857 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 89.190 _refine.B_iso_mean 38.7176 _refine.B_iso_min 17.250 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DYC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 33.2250 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10923 _refine.ls_number_reflns_R_free 1092 _refine.ls_number_reflns_R_work 9831 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9700 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2291 _refine.ls_R_factor_R_free 0.2617 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2255 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.460 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7DXZ _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.3200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 33.2250 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1389 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 168 _refine_hist.pdbx_B_iso_mean_ligand 45.96 _refine_hist.pdbx_B_iso_mean_solvent 46.22 _refine_hist.pdbx_number_atoms_protein 1276 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3003 2.4049 . . 136 1200 100.0000 . . . 0.3084 0.0000 0.2676 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4049 2.5317 . . 131 1186 100.0000 . . . 0.2739 0.0000 0.2534 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5317 2.6902 . . 136 1212 100.0000 . . . 0.2852 0.0000 0.2488 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6902 2.8978 . . 134 1216 100.0000 . . . 0.3244 0.0000 0.2444 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8978 3.1893 . . 132 1204 100.0000 . . . 0.2569 0.0000 0.2345 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1893 3.6503 . . 138 1226 100.0000 . . . 0.2430 0.0000 0.2031 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6503 4.5970 . . 140 1262 100.0000 . . . 0.2106 0.0000 0.1856 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5970 33.2250 . . 145 1325 100.0000 . . . 0.2871 0.0000 0.2433 . . . . . . . . . . . # _struct.entry_id 7DYC _struct.title 'Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DYC _struct_keywords.text 'Double psi beta barrel, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 16 ? VAL A 20 ? ARG A 14 VAL A 18 5 ? 5 HELX_P HELX_P2 AA2 ASP A 28 ? GLY A 36 ? ASP A 26 GLY A 34 1 ? 9 HELX_P HELX_P3 AA3 ARG B 16 ? VAL B 20 ? ARG B 14 VAL B 18 5 ? 5 HELX_P HELX_P4 AA4 ASP B 28 ? GLY B 36 ? ASP B 26 GLY B 34 1 ? 9 HELX_P HELX_P5 AA5 ARG C 16 ? VAL C 20 ? ARG C 14 VAL C 18 5 ? 5 HELX_P HELX_P6 AA6 ASP C 28 ? GLY C 36 ? ASP C 26 GLY C 34 1 ? 9 HELX_P HELX_P7 AA7 ARG D 16 ? VAL D 20 ? ARG D 14 VAL D 18 5 ? 5 HELX_P HELX_P8 AA8 ASP D 28 ? GLY D 36 ? ASP D 26 GLY D 34 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL B 9 ? GLU B 14 ? VAL B 7 GLU B 12 AA1 2 VAL D 24 ? VAL D 27 ? VAL D 22 VAL D 25 AA1 3 VAL B 24 ? VAL B 27 ? VAL B 22 VAL B 25 AA1 4 VAL D 9 ? GLU D 14 ? VAL D 7 GLU D 12 AA1 5 VAL B 42 ? LYS B 47 ? VAL B 40 LYS B 45 AA1 6 VAL D 42 ? LYS D 47 ? VAL D 40 LYS D 45 AA1 7 VAL B 9 ? GLU B 14 ? VAL B 7 GLU B 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG B 11 ? N ARG B 9 O VAL D 25 ? O VAL D 23 AA1 2 3 O ARG D 26 ? O ARG D 24 N ARG B 26 ? N ARG B 24 AA1 3 4 N VAL B 25 ? N VAL B 23 O ARG D 11 ? O ARG D 9 AA1 4 5 O ALA D 10 ? O ALA D 8 N VAL B 43 ? N VAL B 41 AA1 5 6 N LYS B 46 ? N LYS B 44 O GLU D 44 ? O GLU D 42 AA1 6 7 O VAL D 43 ? O VAL D 41 N ALA B 10 ? N ALA B 8 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MLT 101 ? 10 'binding site for residue MLT A 101' AC2 Software C LMR 101 ? 6 'binding site for residue LMR C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 GLU A 14 ? GLU A 12 . ? 4_555 ? 2 AC1 10 ALA A 15 ? ALA A 13 . ? 4_555 ? 3 AC1 10 VAL A 20 ? VAL A 18 . ? 4_555 ? 4 AC1 10 VAL A 27 ? VAL A 25 . ? 1_555 ? 5 AC1 10 ASP A 28 ? ASP A 26 . ? 1_555 ? 6 AC1 10 LYS A 29 ? LYS A 27 . ? 1_555 ? 7 AC1 10 ARG A 32 ? ARG A 30 . ? 1_555 ? 8 AC1 10 HOH G . ? HOH A 207 . ? 1_555 ? 9 AC1 10 ARG C 11 ? ARG C 9 . ? 3_554 ? 10 AC1 10 HOH I . ? HOH C 206 . ? 4_555 ? 11 AC2 6 ARG B 11 ? ARG B 9 . ? 2_445 ? 12 AC2 6 GLU C 14 ? GLU C 12 . ? 6_555 ? 13 AC2 6 ALA C 15 ? ALA C 13 . ? 6_555 ? 14 AC2 6 LYS C 29 ? LYS C 27 . ? 1_555 ? 15 AC2 6 ARG C 32 ? ARG C 30 . ? 1_555 ? 16 AC2 6 HOH I . ? HOH C 201 . ? 1_555 ? # _atom_sites.entry_id 7DYC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019129 _atom_sites.fract_transf_matrix[1][2] 0.011044 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022088 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006815 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 PRO 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 PRO 4 2 ? ? ? A . n A 1 5 GLY 5 3 ? ? ? A . n A 1 6 LYS 6 4 ? ? ? A . n A 1 7 LYS 7 5 5 LYS LYS A . n A 1 8 VAL 8 6 6 VAL VAL A . n A 1 9 VAL 9 7 7 VAL VAL A . n A 1 10 ALA 10 8 8 ALA ALA A . n A 1 11 ARG 11 9 9 ARG ARG A . n A 1 12 VAL 12 10 10 VAL VAL A . n A 1 13 ALA 13 11 11 ALA ALA A . n A 1 14 GLU 14 12 12 GLU GLU A . n A 1 15 ALA 15 13 13 ALA ALA A . n A 1 16 ARG 16 14 14 ARG ARG A . n A 1 17 ALA 17 15 15 ALA ALA A . n A 1 18 GLU 18 16 16 GLU GLU A . n A 1 19 ASP 19 17 17 ASP ASP A . n A 1 20 VAL 20 18 18 VAL VAL A . n A 1 21 GLY 21 19 19 GLY GLY A . n A 1 22 LYS 22 20 20 LYS LYS A . n A 1 23 ARG 23 21 21 ARG ARG A . n A 1 24 VAL 24 22 22 VAL VAL A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 VAL 27 25 25 VAL VAL A . n A 1 28 ASP 28 26 26 ASP ASP A . n A 1 29 LYS 29 27 27 LYS LYS A . n A 1 30 ALA 30 28 28 ALA ALA A . n A 1 31 GLU 31 29 29 GLU GLU A . n A 1 32 ARG 32 30 30 ARG ARG A . n A 1 33 ALA 33 31 31 ALA ALA A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 VAL 35 33 33 VAL VAL A . n A 1 36 GLY 36 34 34 GLY GLY A . n A 1 37 VAL 37 35 35 VAL VAL A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 VAL 39 37 37 VAL VAL A . n A 1 40 GLY 40 38 38 GLY GLY A . n A 1 41 ASP 41 39 39 ASP ASP A . n A 1 42 VAL 42 40 40 VAL VAL A . n A 1 43 VAL 43 41 41 VAL VAL A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 VAL 45 43 43 VAL VAL A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 LYS 47 45 45 LYS LYS A . n A 1 48 VAL 48 46 46 VAL VAL A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 PRO 2 0 ? ? ? B . n B 1 3 MET 3 1 ? ? ? B . n B 1 4 PRO 4 2 ? ? ? B . n B 1 5 GLY 5 3 ? ? ? B . n B 1 6 LYS 6 4 ? ? ? B . n B 1 7 LYS 7 5 5 LYS LYS B . n B 1 8 VAL 8 6 6 VAL VAL B . n B 1 9 VAL 9 7 7 VAL VAL B . n B 1 10 ALA 10 8 8 ALA ALA B . n B 1 11 ARG 11 9 9 ARG ARG B . n B 1 12 VAL 12 10 10 VAL VAL B . n B 1 13 ALA 13 11 11 ALA ALA B . n B 1 14 GLU 14 12 12 GLU GLU B . n B 1 15 ALA 15 13 13 ALA ALA B . n B 1 16 ARG 16 14 14 ARG ARG B . n B 1 17 ALA 17 15 15 ALA ALA B . n B 1 18 GLU 18 16 16 GLU GLU B . n B 1 19 ASP 19 17 17 ASP ASP B . n B 1 20 VAL 20 18 18 VAL VAL B . n B 1 21 GLY 21 19 19 GLY GLY B . n B 1 22 LYS 22 20 20 LYS LYS B . n B 1 23 ARG 23 21 21 ARG ARG B . n B 1 24 VAL 24 22 22 VAL VAL B . n B 1 25 VAL 25 23 23 VAL VAL B . n B 1 26 ARG 26 24 24 ARG ARG B . n B 1 27 VAL 27 25 25 VAL VAL B . n B 1 28 ASP 28 26 26 ASP ASP B . n B 1 29 LYS 29 27 27 LYS LYS B . n B 1 30 ALA 30 28 28 ALA ALA B . n B 1 31 GLU 31 29 29 GLU GLU B . n B 1 32 ARG 32 30 30 ARG ARG B . n B 1 33 ALA 33 31 31 ALA ALA B . n B 1 34 LYS 34 32 32 LYS LYS B . n B 1 35 VAL 35 33 33 VAL VAL B . n B 1 36 GLY 36 34 34 GLY GLY B . n B 1 37 VAL 37 35 35 VAL VAL B . n B 1 38 LYS 38 36 36 LYS LYS B . n B 1 39 VAL 39 37 37 VAL VAL B . n B 1 40 GLY 40 38 38 GLY GLY B . n B 1 41 ASP 41 39 39 ASP ASP B . n B 1 42 VAL 42 40 40 VAL VAL B . n B 1 43 VAL 43 41 41 VAL VAL B . n B 1 44 GLU 44 42 42 GLU GLU B . n B 1 45 VAL 45 43 43 VAL VAL B . n B 1 46 LYS 46 44 44 LYS LYS B . n B 1 47 LYS 47 45 45 LYS LYS B . n B 1 48 VAL 48 46 46 VAL VAL B . n C 1 1 GLY 1 -1 ? ? ? C . n C 1 2 PRO 2 0 ? ? ? C . n C 1 3 MET 3 1 ? ? ? C . n C 1 4 PRO 4 2 ? ? ? C . n C 1 5 GLY 5 3 ? ? ? C . n C 1 6 LYS 6 4 ? ? ? C . n C 1 7 LYS 7 5 5 LYS LYS C . n C 1 8 VAL 8 6 6 VAL VAL C . n C 1 9 VAL 9 7 7 VAL VAL C . n C 1 10 ALA 10 8 8 ALA ALA C . n C 1 11 ARG 11 9 9 ARG ARG C . n C 1 12 VAL 12 10 10 VAL VAL C . n C 1 13 ALA 13 11 11 ALA ALA C . n C 1 14 GLU 14 12 12 GLU GLU C . n C 1 15 ALA 15 13 13 ALA ALA C . n C 1 16 ARG 16 14 14 ARG ARG C . n C 1 17 ALA 17 15 15 ALA ALA C . n C 1 18 GLU 18 16 16 GLU GLU C . n C 1 19 ASP 19 17 17 ASP ASP C . n C 1 20 VAL 20 18 18 VAL VAL C . n C 1 21 GLY 21 19 19 GLY GLY C . n C 1 22 LYS 22 20 20 LYS LYS C . n C 1 23 ARG 23 21 21 ARG ARG C . n C 1 24 VAL 24 22 22 VAL VAL C . n C 1 25 VAL 25 23 23 VAL VAL C . n C 1 26 ARG 26 24 24 ARG ARG C . n C 1 27 VAL 27 25 25 VAL VAL C . n C 1 28 ASP 28 26 26 ASP ASP C . n C 1 29 LYS 29 27 27 LYS LYS C . n C 1 30 ALA 30 28 28 ALA ALA C . n C 1 31 GLU 31 29 29 GLU GLU C . n C 1 32 ARG 32 30 30 ARG ARG C . n C 1 33 ALA 33 31 31 ALA ALA C . n C 1 34 LYS 34 32 32 LYS LYS C . n C 1 35 VAL 35 33 33 VAL VAL C . n C 1 36 GLY 36 34 34 GLY GLY C . n C 1 37 VAL 37 35 35 VAL VAL C . n C 1 38 LYS 38 36 36 LYS LYS C . n C 1 39 VAL 39 37 37 VAL VAL C . n C 1 40 GLY 40 38 38 GLY GLY C . n C 1 41 ASP 41 39 39 ASP ASP C . n C 1 42 VAL 42 40 40 VAL VAL C . n C 1 43 VAL 43 41 41 VAL VAL C . n C 1 44 GLU 44 42 42 GLU GLU C . n C 1 45 VAL 45 43 43 VAL VAL C . n C 1 46 LYS 46 44 44 LYS LYS C . n C 1 47 LYS 47 45 45 LYS LYS C . n C 1 48 VAL 48 46 46 VAL VAL C . n D 1 1 GLY 1 -1 ? ? ? D . n D 1 2 PRO 2 0 ? ? ? D . n D 1 3 MET 3 1 ? ? ? D . n D 1 4 PRO 4 2 ? ? ? D . n D 1 5 GLY 5 3 ? ? ? D . n D 1 6 LYS 6 4 ? ? ? D . n D 1 7 LYS 7 5 5 LYS LYS D . n D 1 8 VAL 8 6 6 VAL VAL D . n D 1 9 VAL 9 7 7 VAL VAL D . n D 1 10 ALA 10 8 8 ALA ALA D . n D 1 11 ARG 11 9 9 ARG ARG D . n D 1 12 VAL 12 10 10 VAL VAL D . n D 1 13 ALA 13 11 11 ALA ALA D . n D 1 14 GLU 14 12 12 GLU GLU D . n D 1 15 ALA 15 13 13 ALA ALA D . n D 1 16 ARG 16 14 14 ARG ARG D . n D 1 17 ALA 17 15 15 ALA ALA D . n D 1 18 GLU 18 16 16 GLU GLU D . n D 1 19 ASP 19 17 17 ASP ASP D . n D 1 20 VAL 20 18 18 VAL VAL D . n D 1 21 GLY 21 19 19 GLY GLY D . n D 1 22 LYS 22 20 20 LYS LYS D . n D 1 23 ARG 23 21 21 ARG ARG D . n D 1 24 VAL 24 22 22 VAL VAL D . n D 1 25 VAL 25 23 23 VAL VAL D . n D 1 26 ARG 26 24 24 ARG ARG D . n D 1 27 VAL 27 25 25 VAL VAL D . n D 1 28 ASP 28 26 26 ASP ASP D . n D 1 29 LYS 29 27 27 LYS LYS D . n D 1 30 ALA 30 28 28 ALA ALA D . n D 1 31 GLU 31 29 29 GLU GLU D . n D 1 32 ARG 32 30 30 ARG ARG D . n D 1 33 ALA 33 31 31 ALA ALA D . n D 1 34 LYS 34 32 32 LYS LYS D . n D 1 35 VAL 35 33 33 VAL VAL D . n D 1 36 GLY 36 34 34 GLY GLY D . n D 1 37 VAL 37 35 35 VAL VAL D . n D 1 38 LYS 38 36 36 LYS LYS D . n D 1 39 VAL 39 37 37 VAL VAL D . n D 1 40 GLY 40 38 38 GLY GLY D . n D 1 41 ASP 41 39 39 ASP ASP D . n D 1 42 VAL 42 40 40 VAL VAL D . n D 1 43 VAL 43 41 41 VAL VAL D . n D 1 44 GLU 44 42 42 GLU GLU D . n D 1 45 VAL 45 43 43 VAL VAL D . n D 1 46 LYS 46 44 44 LYS LYS D . n D 1 47 LYS 47 45 45 LYS LYS D . n D 1 48 VAL 48 46 46 VAL VAL D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MLT 1 101 101 MLT MLT A . F 3 LMR 1 101 101 LMR LMR C . G 4 HOH 1 201 86 HOH HOH A . G 4 HOH 2 202 27 HOH HOH A . G 4 HOH 3 203 32 HOH HOH A . G 4 HOH 4 204 65 HOH HOH A . G 4 HOH 5 205 10 HOH HOH A . G 4 HOH 6 206 17 HOH HOH A . G 4 HOH 7 207 67 HOH HOH A . G 4 HOH 8 208 13 HOH HOH A . G 4 HOH 9 209 1 HOH HOH A . G 4 HOH 10 210 38 HOH HOH A . G 4 HOH 11 211 31 HOH HOH A . G 4 HOH 12 212 5 HOH HOH A . G 4 HOH 13 213 62 HOH HOH A . G 4 HOH 14 214 44 HOH HOH A . G 4 HOH 15 215 68 HOH HOH A . G 4 HOH 16 216 18 HOH HOH A . G 4 HOH 17 217 2 HOH HOH A . G 4 HOH 18 218 58 HOH HOH A . G 4 HOH 19 219 93 HOH HOH A . G 4 HOH 20 220 73 HOH HOH A . G 4 HOH 21 221 24 HOH HOH A . G 4 HOH 22 222 53 HOH HOH A . G 4 HOH 23 223 36 HOH HOH A . G 4 HOH 24 224 71 HOH HOH A . G 4 HOH 25 225 88 HOH HOH A . G 4 HOH 26 226 37 HOH HOH A . G 4 HOH 27 227 48 HOH HOH A . G 4 HOH 28 228 82 HOH HOH A . G 4 HOH 29 229 39 HOH HOH A . G 4 HOH 30 230 69 HOH HOH A . G 4 HOH 31 231 81 HOH HOH A . G 4 HOH 32 232 72 HOH HOH A . G 4 HOH 33 233 94 HOH HOH A . G 4 HOH 34 234 45 HOH HOH A . G 4 HOH 35 235 50 HOH HOH A . H 4 HOH 1 101 41 HOH HOH B . H 4 HOH 2 102 52 HOH HOH B . H 4 HOH 3 103 91 HOH HOH B . H 4 HOH 4 104 35 HOH HOH B . H 4 HOH 5 105 79 HOH HOH B . H 4 HOH 6 106 21 HOH HOH B . H 4 HOH 7 107 7 HOH HOH B . H 4 HOH 8 108 49 HOH HOH B . H 4 HOH 9 109 84 HOH HOH B . H 4 HOH 10 110 23 HOH HOH B . H 4 HOH 11 111 85 HOH HOH B . H 4 HOH 12 112 33 HOH HOH B . H 4 HOH 13 113 4 HOH HOH B . H 4 HOH 14 114 30 HOH HOH B . H 4 HOH 15 115 95 HOH HOH B . H 4 HOH 16 116 16 HOH HOH B . H 4 HOH 17 117 76 HOH HOH B . H 4 HOH 18 118 14 HOH HOH B . H 4 HOH 19 119 25 HOH HOH B . H 4 HOH 20 120 47 HOH HOH B . H 4 HOH 21 121 64 HOH HOH B . H 4 HOH 22 122 63 HOH HOH B . H 4 HOH 23 123 12 HOH HOH B . H 4 HOH 24 124 46 HOH HOH B . H 4 HOH 25 125 87 HOH HOH B . H 4 HOH 26 126 92 HOH HOH B . H 4 HOH 27 127 80 HOH HOH B . H 4 HOH 28 128 54 HOH HOH B . H 4 HOH 29 129 42 HOH HOH B . H 4 HOH 30 130 56 HOH HOH B . H 4 HOH 31 131 60 HOH HOH B . I 4 HOH 1 201 89 HOH HOH C . I 4 HOH 2 202 6 HOH HOH C . I 4 HOH 3 203 43 HOH HOH C . I 4 HOH 4 204 22 HOH HOH C . I 4 HOH 5 205 59 HOH HOH C . I 4 HOH 6 206 19 HOH HOH C . I 4 HOH 7 207 55 HOH HOH C . I 4 HOH 8 208 77 HOH HOH C . I 4 HOH 9 209 57 HOH HOH C . I 4 HOH 10 210 78 HOH HOH C . I 4 HOH 11 211 74 HOH HOH C . I 4 HOH 12 212 51 HOH HOH C . I 4 HOH 13 213 70 HOH HOH C . J 4 HOH 1 101 61 HOH HOH D . J 4 HOH 2 102 11 HOH HOH D . J 4 HOH 3 103 40 HOH HOH D . J 4 HOH 4 104 75 HOH HOH D . J 4 HOH 5 105 9 HOH HOH D . J 4 HOH 6 106 28 HOH HOH D . J 4 HOH 7 107 8 HOH HOH D . J 4 HOH 8 108 3 HOH HOH D . J 4 HOH 9 109 90 HOH HOH D . J 4 HOH 10 110 83 HOH HOH D . J 4 HOH 11 111 20 HOH HOH D . J 4 HOH 12 112 29 HOH HOH D . J 4 HOH 13 113 15 HOH HOH D . J 4 HOH 14 114 26 HOH HOH D . J 4 HOH 15 115 66 HOH HOH D . J 4 HOH 16 116 34 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,E,G 2 1 B,D,H,J 3 1,3 C,F,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4670 ? 1 MORE -19 ? 1 'SSA (A^2)' 4990 ? 2 'ABSA (A^2)' 4240 ? 2 MORE -12 ? 2 'SSA (A^2)' 4910 ? 3 'ABSA (A^2)' 4610 ? 3 MORE -13 ? 3 'SSA (A^2)' 4790 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 48.9103333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-29 2 'Structure model' 1 1 2021-11-17 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' citation 6 3 'Structure model' pdbx_initial_refinement_model # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_id_ISSN' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7DYC _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 215 ? ? O A HOH 230 ? ? 1.64 2 1 NE D ARG 14 ? ? O D HOH 101 ? ? 1.82 3 1 N A LYS 5 ? ? O A HOH 201 ? ? 1.83 4 1 O A HOH 226 ? ? O A HOH 234 ? ? 1.83 5 1 NE B ARG 9 ? ? O B HOH 101 ? ? 1.85 6 1 N D LYS 5 ? ? O D HOH 102 ? ? 1.93 7 1 O C HOH 201 ? ? O C HOH 211 ? ? 1.96 8 1 O A HOH 213 ? ? O A HOH 230 ? ? 1.99 9 1 N B LYS 5 ? ? O B HOH 102 ? ? 2.00 10 1 O B LYS 45 ? ? O B HOH 103 ? ? 2.02 11 1 OD2 D ASP 26 ? ? O D HOH 103 ? ? 2.03 12 1 O A LYS 20 ? ? O A HOH 202 ? ? 2.10 13 1 NH2 D ARG 21 ? ? O D HOH 104 ? ? 2.11 14 1 O B HOH 102 ? ? O B HOH 126 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE1 C GLU 12 ? ? 1_555 O4B C LMR 101 ? ? 6_555 1.81 2 1 O A HOH 228 ? ? 1_555 O C HOH 213 ? ? 3_554 1.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A PRO 0 ? A PRO 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A PRO 2 ? A PRO 4 5 1 Y 1 A GLY 3 ? A GLY 5 6 1 Y 1 A LYS 4 ? A LYS 6 7 1 Y 1 B GLY -1 ? B GLY 1 8 1 Y 1 B PRO 0 ? B PRO 2 9 1 Y 1 B MET 1 ? B MET 3 10 1 Y 1 B PRO 2 ? B PRO 4 11 1 Y 1 B GLY 3 ? B GLY 5 12 1 Y 1 B LYS 4 ? B LYS 6 13 1 Y 1 C GLY -1 ? C GLY 1 14 1 Y 1 C PRO 0 ? C PRO 2 15 1 Y 1 C MET 1 ? C MET 3 16 1 Y 1 C PRO 2 ? C PRO 4 17 1 Y 1 C GLY 3 ? C GLY 5 18 1 Y 1 C LYS 4 ? C LYS 6 19 1 Y 1 D GLY -1 ? D GLY 1 20 1 Y 1 D PRO 0 ? D PRO 2 21 1 Y 1 D MET 1 ? D MET 3 22 1 Y 1 D PRO 2 ? D PRO 4 23 1 Y 1 D GLY 3 ? D GLY 5 24 1 Y 1 D LYS 4 ? D LYS 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLU N N N N 57 GLU CA C N S 58 GLU C C N N 59 GLU O O N N 60 GLU CB C N N 61 GLU CG C N N 62 GLU CD C N N 63 GLU OE1 O N N 64 GLU OE2 O N N 65 GLU OXT O N N 66 GLU H H N N 67 GLU H2 H N N 68 GLU HA H N N 69 GLU HB2 H N N 70 GLU HB3 H N N 71 GLU HG2 H N N 72 GLU HG3 H N N 73 GLU HE2 H N N 74 GLU HXT H N N 75 GLY N N N N 76 GLY CA C N N 77 GLY C C N N 78 GLY O O N N 79 GLY OXT O N N 80 GLY H H N N 81 GLY H2 H N N 82 GLY HA2 H N N 83 GLY HA3 H N N 84 GLY HXT H N N 85 HOH O O N N 86 HOH H1 H N N 87 HOH H2 H N N 88 LMR C1 C N N 89 LMR O1A O N N 90 LMR O1B O N N 91 LMR C2 C N S 92 LMR O2 O N N 93 LMR C3 C N N 94 LMR C4 C N N 95 LMR O4A O N N 96 LMR O4B O N N 97 LMR H2 H N N 98 LMR HO2 H N N 99 LMR H3 H N N 100 LMR H3A H N N 101 LMR H4 H N N 102 LMR H5 H N N 103 LYS N N N N 104 LYS CA C N S 105 LYS C C N N 106 LYS O O N N 107 LYS CB C N N 108 LYS CG C N N 109 LYS CD C N N 110 LYS CE C N N 111 LYS NZ N N N 112 LYS OXT O N N 113 LYS H H N N 114 LYS H2 H N N 115 LYS HA H N N 116 LYS HB2 H N N 117 LYS HB3 H N N 118 LYS HG2 H N N 119 LYS HG3 H N N 120 LYS HD2 H N N 121 LYS HD3 H N N 122 LYS HE2 H N N 123 LYS HE3 H N N 124 LYS HZ1 H N N 125 LYS HZ2 H N N 126 LYS HZ3 H N N 127 LYS HXT H N N 128 MET N N N N 129 MET CA C N S 130 MET C C N N 131 MET O O N N 132 MET CB C N N 133 MET CG C N N 134 MET SD S N N 135 MET CE C N N 136 MET OXT O N N 137 MET H H N N 138 MET H2 H N N 139 MET HA H N N 140 MET HB2 H N N 141 MET HB3 H N N 142 MET HG2 H N N 143 MET HG3 H N N 144 MET HE1 H N N 145 MET HE2 H N N 146 MET HE3 H N N 147 MET HXT H N N 148 MLT C1 C N N 149 MLT O1 O N N 150 MLT O2 O N N 151 MLT C2 C N R 152 MLT O3 O N N 153 MLT C3 C N N 154 MLT C4 C N N 155 MLT O4 O N N 156 MLT O5 O N N 157 MLT H2 H N N 158 MLT HO3 H N N 159 MLT H31 H N N 160 MLT H32 H N N 161 MLT HO5 H N N 162 MLT H6 H N N 163 PRO N N N N 164 PRO CA C N S 165 PRO C C N N 166 PRO O O N N 167 PRO CB C N N 168 PRO CG C N N 169 PRO CD C N N 170 PRO OXT O N N 171 PRO H H N N 172 PRO HA H N N 173 PRO HB2 H N N 174 PRO HB3 H N N 175 PRO HG2 H N N 176 PRO HG3 H N N 177 PRO HD2 H N N 178 PRO HD3 H N N 179 PRO HXT H N N 180 VAL N N N N 181 VAL CA C N S 182 VAL C C N N 183 VAL O O N N 184 VAL CB C N N 185 VAL CG1 C N N 186 VAL CG2 C N N 187 VAL OXT O N N 188 VAL H H N N 189 VAL H2 H N N 190 VAL HA H N N 191 VAL HB H N N 192 VAL HG11 H N N 193 VAL HG12 H N N 194 VAL HG13 H N N 195 VAL HG21 H N N 196 VAL HG22 H N N 197 VAL HG23 H N N 198 VAL HXT H N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLU N CA sing N N 54 GLU N H sing N N 55 GLU N H2 sing N N 56 GLU CA C sing N N 57 GLU CA CB sing N N 58 GLU CA HA sing N N 59 GLU C O doub N N 60 GLU C OXT sing N N 61 GLU CB CG sing N N 62 GLU CB HB2 sing N N 63 GLU CB HB3 sing N N 64 GLU CG CD sing N N 65 GLU CG HG2 sing N N 66 GLU CG HG3 sing N N 67 GLU CD OE1 doub N N 68 GLU CD OE2 sing N N 69 GLU OE2 HE2 sing N N 70 GLU OXT HXT sing N N 71 GLY N CA sing N N 72 GLY N H sing N N 73 GLY N H2 sing N N 74 GLY CA C sing N N 75 GLY CA HA2 sing N N 76 GLY CA HA3 sing N N 77 GLY C O doub N N 78 GLY C OXT sing N N 79 GLY OXT HXT sing N N 80 HOH O H1 sing N N 81 HOH O H2 sing N N 82 LMR C1 O1A doub N N 83 LMR C1 O1B sing N N 84 LMR C1 C2 sing N N 85 LMR C2 O2 sing N N 86 LMR C2 C3 sing N N 87 LMR C3 C4 sing N N 88 LMR C4 O4A sing N N 89 LMR C4 O4B doub N N 90 LMR C2 H2 sing N N 91 LMR O2 HO2 sing N N 92 LMR C3 H3 sing N N 93 LMR C3 H3A sing N N 94 LMR O1B H4 sing N N 95 LMR O4A H5 sing N N 96 LYS N CA sing N N 97 LYS N H sing N N 98 LYS N H2 sing N N 99 LYS CA C sing N N 100 LYS CA CB sing N N 101 LYS CA HA sing N N 102 LYS C O doub N N 103 LYS C OXT sing N N 104 LYS CB CG sing N N 105 LYS CB HB2 sing N N 106 LYS CB HB3 sing N N 107 LYS CG CD sing N N 108 LYS CG HG2 sing N N 109 LYS CG HG3 sing N N 110 LYS CD CE sing N N 111 LYS CD HD2 sing N N 112 LYS CD HD3 sing N N 113 LYS CE NZ sing N N 114 LYS CE HE2 sing N N 115 LYS CE HE3 sing N N 116 LYS NZ HZ1 sing N N 117 LYS NZ HZ2 sing N N 118 LYS NZ HZ3 sing N N 119 LYS OXT HXT sing N N 120 MET N CA sing N N 121 MET N H sing N N 122 MET N H2 sing N N 123 MET CA C sing N N 124 MET CA CB sing N N 125 MET CA HA sing N N 126 MET C O doub N N 127 MET C OXT sing N N 128 MET CB CG sing N N 129 MET CB HB2 sing N N 130 MET CB HB3 sing N N 131 MET CG SD sing N N 132 MET CG HG2 sing N N 133 MET CG HG3 sing N N 134 MET SD CE sing N N 135 MET CE HE1 sing N N 136 MET CE HE2 sing N N 137 MET CE HE3 sing N N 138 MET OXT HXT sing N N 139 MLT C1 O1 doub N N 140 MLT C1 O2 sing N N 141 MLT C1 C2 sing N N 142 MLT C2 O3 sing N N 143 MLT C2 C3 sing N N 144 MLT C2 H2 sing N N 145 MLT O3 HO3 sing N N 146 MLT C3 C4 sing N N 147 MLT C3 H31 sing N N 148 MLT C3 H32 sing N N 149 MLT C4 O4 doub N N 150 MLT C4 O5 sing N N 151 MLT O5 HO5 sing N N 152 MLT O2 H6 sing N N 153 PRO N CA sing N N 154 PRO N CD sing N N 155 PRO N H sing N N 156 PRO CA C sing N N 157 PRO CA CB sing N N 158 PRO CA HA sing N N 159 PRO C O doub N N 160 PRO C OXT sing N N 161 PRO CB CG sing N N 162 PRO CB HB2 sing N N 163 PRO CB HB3 sing N N 164 PRO CG CD sing N N 165 PRO CG HG2 sing N N 166 PRO CG HG3 sing N N 167 PRO CD HD2 sing N N 168 PRO CD HD3 sing N N 169 PRO OXT HXT sing N N 170 VAL N CA sing N N 171 VAL N H sing N N 172 VAL N H2 sing N N 173 VAL CA C sing N N 174 VAL CA CB sing N N 175 VAL CA HA sing N N 176 VAL C O doub N N 177 VAL C OXT sing N N 178 VAL CB CG1 sing N N 179 VAL CB CG2 sing N N 180 VAL CB HB sing N N 181 VAL CG1 HG11 sing N N 182 VAL CG1 HG12 sing N N 183 VAL CG1 HG13 sing N N 184 VAL CG2 HG21 sing N N 185 VAL CG2 HG22 sing N N 186 VAL CG2 HG23 sing N N 187 VAL OXT HXT sing N N 188 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 18H01328 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 D-MALATE MLT 3 '(2S)-2-hydroxybutanedioic acid' LMR 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7DXZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #