HEADER PHOTOSYNTHESIS 28-JAN-21 7E0J TITLE LHCII-1 IN THE STATE TRANSITION SUPERCOMPLEX PSI-LHCI-LHCII FROM THE TITLE 2 DOUBLE PHOSPHATASE MUTANT PPH1;PBCP OF CHLAMYDOMONAS REINHARDTI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC; COMPND 3 CHAIN: X; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC; COMPND 6 CHAIN: Y; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC; COMPND 9 CHAIN: Z; COMPND 10 SYNONYM: LHCBM1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 4 ORGANISM_TAXID: 3055; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 7 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 8 ORGANISM_TAXID: 3055; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 11 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 12 ORGANISM_TAXID: 3055 KEYWDS SUPERCOMPLEX, LHCII, STATE TRANSITION, GREEN ALGA, CHLAMYDOMONAS KEYWDS 2 REINHARDTII, PHOTOSYNTHESIS EXPDTA ELECTRON MICROSCOPY AUTHOR X.W.PAN,A.J.LI,Z.F.LIU,M.LI REVDAT 4 23-OCT-24 7E0J 1 REMARK REVDAT 3 01-SEP-21 7E0J 1 JRNL REVDAT 2 21-JUL-21 7E0J 1 JRNL FORMUL REVDAT 1 30-JUN-21 7E0J 0 JRNL AUTH X.PAN,R.TOKUTSU,A.LI,K.TAKIZAWA,C.SONG,K.MURATA,T.YAMASAKI, JRNL AUTH 2 Z.LIU,J.MINAGAWA,M.LI JRNL TITL STRUCTURAL BASIS OF LHCBM5-MEDIATED STATE TRANSITIONS IN JRNL TITL 2 GREEN ALGAE. JRNL REF NAT.PLANTS V. 7 1119 2021 JRNL REFN ESSN 2055-0278 JRNL PMID 34239095 JRNL DOI 10.1038/S41477-021-00960-8 REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.130 REMARK 3 NUMBER OF PARTICLES : 55601 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7E0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020499. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STATE TRANSITION COMPLEX PSI REMARK 245 -LHCI-LHCII FROM GREEN ALGAE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 156.25 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 ALA X 3 REMARK 465 ILE X 4 REMARK 465 MET X 5 REMARK 465 LYS X 6 REMARK 465 SER X 7 REMARK 465 ALA X 8 REMARK 465 VAL X 9 REMARK 465 ARG X 10 REMARK 465 SER X 11 REMARK 465 SER X 12 REMARK 465 VAL X 13 REMARK 465 ARG X 14 REMARK 465 PRO X 15 REMARK 465 THR X 16 REMARK 465 VAL X 17 REMARK 465 SER X 18 REMARK 465 GLY X 19 REMARK 465 ARG X 20 REMARK 465 SER X 21 REMARK 465 ALA X 22 REMARK 465 ARG X 23 REMARK 465 VAL X 24 REMARK 465 VAL X 25 REMARK 465 PRO X 26 REMARK 465 ARG X 27 REMARK 465 ALA X 28 REMARK 465 ALA X 29 REMARK 465 MET Y 1 REMARK 465 ALA Y 2 REMARK 465 PHE Y 3 REMARK 465 ALA Y 4 REMARK 465 LEU Y 5 REMARK 465 SER Y 6 REMARK 465 PHE Y 7 REMARK 465 SER Y 8 REMARK 465 ARG Y 9 REMARK 465 LYS Y 10 REMARK 465 ALA Y 11 REMARK 465 LEU Y 12 REMARK 465 GLN Y 13 REMARK 465 VAL Y 14 REMARK 465 SER Y 15 REMARK 465 ALA Y 16 REMARK 465 LYS Y 17 REMARK 465 ALA Y 18 REMARK 465 THR Y 19 REMARK 465 GLY Y 20 REMARK 465 LYS Y 21 REMARK 465 LYS Y 22 REMARK 465 GLY Y 23 REMARK 465 THR Y 24 REMARK 465 GLY Y 25 REMARK 465 LYS Y 26 REMARK 465 THR Y 27 REMARK 465 ALA Y 28 REMARK 465 ALA Y 29 REMARK 465 LYS Y 30 REMARK 465 GLN Y 31 REMARK 465 ALA Y 32 REMARK 465 PRO Y 33 REMARK 465 ALA Y 34 REMARK 465 SER Y 35 REMARK 465 SER Y 36 REMARK 465 ALA Y 257 REMARK 465 MET Z 1 REMARK 465 ALA Z 2 REMARK 465 PHE Z 3 REMARK 465 ALA Z 4 REMARK 465 LEU Z 5 REMARK 465 ALA Z 6 REMARK 465 LYS Z 7 REMARK 465 SER Z 8 REMARK 465 SER Z 9 REMARK 465 ALA Z 10 REMARK 465 ARG Z 11 REMARK 465 ALA Z 12 REMARK 465 ALA Z 13 REMARK 465 VAL Z 14 REMARK 465 SER Z 15 REMARK 465 ARG Z 16 REMARK 465 ARG Z 17 REMARK 465 SER Z 18 REMARK 465 THR Z 19 REMARK 465 VAL Z 20 REMARK 465 LYS Z 21 REMARK 465 VAL Z 22 REMARK 465 GLU Z 23 REMARK 465 ALA Z 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 36 37.87 -99.56 REMARK 500 LEU X 135 -60.14 -95.92 REMARK 500 ASN X 232 86.28 -157.57 REMARK 500 ASN Y 44 55.32 -94.46 REMARK 500 VAL Y 144 -52.74 -124.57 REMARK 500 ALA Y 173 50.27 -118.93 REMARK 500 GLU Y 184 -15.82 73.55 REMARK 500 ASN Y 240 86.15 -154.20 REMARK 500 ASN Y 244 32.60 -94.05 REMARK 500 PRO Z 30 -179.73 -64.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CLA X 603 REMARK 610 CLA X 604 REMARK 610 CHL X 605 REMARK 610 CLA X 611 REMARK 610 CLA X 612 REMARK 610 CLA X 614 REMARK 610 CLA Y 602 REMARK 610 CLA Y 603 REMARK 610 CLA Y 604 REMARK 610 CHL Y 605 REMARK 610 CHL Y 606 REMARK 610 CHL Y 608 REMARK 610 CLA Y 611 REMARK 610 CLA Y 612 REMARK 610 CLA Y 614 REMARK 610 NEX Y 1623 REMARK 610 CLA Z 602 REMARK 610 CLA Z 604 REMARK 610 CHL Z 605 REMARK 610 CHL Z 606 REMARK 610 CHL Z 608 REMARK 610 CLA Z 614 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL X 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE X 40 O REMARK 620 2 CHL X 601 NA 95.4 REMARK 620 3 CHL X 601 NB 97.0 92.0 REMARK 620 4 CHL X 601 NC 87.7 175.1 91.3 REMARK 620 5 CHL X 601 ND 88.1 91.4 173.6 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA X 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 82 OE2 REMARK 620 2 CLA X 602 NA 88.4 REMARK 620 3 CLA X 602 NB 104.8 90.0 REMARK 620 4 CLA X 602 NC 107.2 163.7 90.4 REMARK 620 5 CLA X 602 ND 92.7 89.7 162.4 85.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL X 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE X 136 O REMARK 620 2 CHL X 605 NA 74.2 REMARK 620 3 CHL X 605 NB 82.4 91.1 REMARK 620 4 CHL X 605 NC 109.3 176.6 89.6 REMARK 620 5 CHL X 605 ND 104.1 92.0 173.4 86.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL X 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 156 OE1 REMARK 620 2 CHL X 609 NA 72.7 REMARK 620 3 CHL X 609 NB 72.3 91.2 REMARK 620 4 CHL X 609 NC 113.4 173.9 91.6 REMARK 620 5 CHL X 609 ND 112.0 92.5 175.0 84.4 REMARK 620 6 GLU X 156 OE2 54.5 122.6 92.4 62.6 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA X 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 197 OE2 REMARK 620 2 CLA X 610 NA 102.7 REMARK 620 3 CLA X 610 NB 98.2 89.3 REMARK 620 4 CLA X 610 NC 94.6 162.6 90.1 REMARK 620 5 CLA X 610 ND 100.0 89.7 161.5 85.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA X 612 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X 200 OD1 REMARK 620 2 CLA X 612 NA 83.0 REMARK 620 3 CLA X 612 NB 96.2 90.0 REMARK 620 4 CLA X 612 NC 112.2 164.7 90.4 REMARK 620 5 CLA X 612 ND 100.7 90.3 163.1 84.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA X 613 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN X 214 OE1 REMARK 620 2 CLA X 613 NA 91.4 REMARK 620 3 CLA X 613 NB 126.6 89.4 REMARK 620 4 CLA X 613 NC 103.2 162.2 90.0 REMARK 620 5 CLA X 613 ND 72.3 90.1 161.1 84.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA X 611 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG X2630 O4 REMARK 620 2 CLA X 611 NA 81.1 REMARK 620 3 CLA X 611 NB 110.5 89.8 REMARK 620 4 CLA X 611 NC 113.7 164.0 90.3 REMARK 620 5 CLA X 611 ND 86.9 90.1 162.4 84.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL Y 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP Y 48 O REMARK 620 2 CHL Y 601 NA 99.0 REMARK 620 3 CHL Y 601 NB 97.7 92.1 REMARK 620 4 CHL Y 601 NC 84.1 175.2 91.2 REMARK 620 5 CHL Y 601 ND 87.2 91.4 173.5 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Y 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU Y 90 OE2 REMARK 620 2 CLA Y 602 NA 88.8 REMARK 620 3 CLA Y 602 NB 105.4 89.9 REMARK 620 4 CLA Y 602 NC 106.8 163.8 90.3 REMARK 620 5 CLA Y 602 ND 92.2 89.7 162.4 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL Y 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL Y 144 O REMARK 620 2 CHL Y 605 NA 85.1 REMARK 620 3 CHL Y 605 NB 85.5 91.2 REMARK 620 4 CHL Y 605 NC 98.2 176.6 89.7 REMARK 620 5 CHL Y 605 ND 100.5 92.0 173.4 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL Y 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU Y 164 OE1 REMARK 620 2 CHL Y 609 NA 71.4 REMARK 620 3 CHL Y 609 NB 73.2 91.2 REMARK 620 4 CHL Y 609 NC 114.6 173.9 91.6 REMARK 620 5 CHL Y 609 ND 111.1 92.5 175.0 84.4 REMARK 620 6 GLU Y 164 OE2 54.6 121.7 92.9 63.5 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Y 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU Y 205 OE2 REMARK 620 2 CLA Y 610 NA 102.3 REMARK 620 3 CLA Y 610 NB 97.0 89.3 REMARK 620 4 CLA Y 610 NC 95.1 162.5 90.1 REMARK 620 5 CLA Y 610 ND 101.4 89.7 161.4 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Y 612 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN Y 208 OD1 REMARK 620 2 CLA Y 612 NA 84.0 REMARK 620 3 CLA Y 612 NB 96.1 90.0 REMARK 620 4 CLA Y 612 NC 111.2 164.7 90.3 REMARK 620 5 CLA Y 612 ND 100.8 90.4 163.0 84.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Y 613 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN Y 222 OE1 REMARK 620 2 CLA Y 613 NA 92.3 REMARK 620 3 CLA Y 613 NB 127.6 89.4 REMARK 620 4 CLA Y 613 NC 102.2 162.1 90.0 REMARK 620 5 CLA Y 613 ND 71.3 90.1 161.1 84.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Y 611 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG Y2630 O4 REMARK 620 2 CLA Y 611 NA 81.1 REMARK 620 3 CLA Y 611 NB 110.5 89.8 REMARK 620 4 CLA Y 611 NC 113.8 163.9 90.3 REMARK 620 5 CLA Y 611 ND 86.9 90.1 162.3 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL Z 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE Z 49 O REMARK 620 2 CHL Z 601 NA 88.9 REMARK 620 3 CHL Z 601 NB 103.1 92.3 REMARK 620 4 CHL Z 601 NC 92.4 176.0 91.0 REMARK 620 5 CHL Z 601 ND 81.6 91.2 174.2 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Z 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU Z 90 OE2 REMARK 620 2 CLA Z 602 NA 91.3 REMARK 620 3 CLA Z 602 NB 104.6 90.0 REMARK 620 4 CLA Z 602 NC 104.2 163.9 90.5 REMARK 620 5 CLA Z 602 ND 92.9 89.7 162.4 85.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL Z 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL Z 144 O REMARK 620 2 CHL Z 605 NA 78.2 REMARK 620 3 CHL Z 605 NB 100.7 90.5 REMARK 620 4 CHL Z 605 NC 105.7 175.8 90.3 REMARK 620 5 CHL Z 605 ND 84.0 92.7 174.8 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL Z 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU Z 164 OE1 REMARK 620 2 CHL Z 609 NA 93.8 REMARK 620 3 CHL Z 609 NB 87.0 90.9 REMARK 620 4 CHL Z 609 NC 92.0 173.8 91.8 REMARK 620 5 CHL Z 609 ND 92.6 92.7 176.4 84.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Z 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU Z 205 OE2 REMARK 620 2 CLA Z 610 NA 108.6 REMARK 620 3 CLA Z 610 NB 99.8 89.0 REMARK 620 4 CLA Z 610 NC 89.4 161.8 90.3 REMARK 620 5 CLA Z 610 ND 98.7 89.6 160.9 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Z 612 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN Z 208 OD1 REMARK 620 2 CLA Z 612 NA 91.5 REMARK 620 3 CLA Z 612 NB 101.9 90.1 REMARK 620 4 CLA Z 612 NC 103.8 164.2 90.4 REMARK 620 5 CLA Z 612 ND 95.4 90.1 162.7 84.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Z 613 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN Z 222 OE1 REMARK 620 2 CLA Z 613 NA 93.5 REMARK 620 3 CLA Z 613 NB 115.3 89.5 REMARK 620 4 CLA Z 613 NC 102.5 162.5 90.1 REMARK 620 5 CLA Z 613 ND 83.1 90.2 161.6 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA Z 611 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG Z2630 O4 REMARK 620 2 CLA Z 611 NA 78.2 REMARK 620 3 CLA Z 611 NB 101.9 90.4 REMARK 620 4 CLA Z 611 NC 116.6 164.7 90.2 REMARK 620 5 CLA Z 611 ND 94.6 90.1 163.2 84.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30934 RELATED DB: EMDB REMARK 900 LHCII-1 IN THE STATE TRANSITION SUPERCOMPLEX PSI-LHCI-LHCII FROM REMARK 900 THE PPH1;PBCP MUTANT OF CHLAMYDOMONAS REINHARDTII DBREF 7E0J X 1 249 UNP Q93WE0 Q93WE0_CHLRE 1 249 DBREF 7E0J Y 1 257 UNP Q93WL4 Q93WL4_CHLRE 1 257 DBREF 7E0J Z 1 256 UNP Q93VE0 Q93VE0_CHLRE 1 256 SEQRES 1 X 249 MET ALA ALA ILE MET LYS SER ALA VAL ARG SER SER VAL SEQRES 2 X 249 ARG PRO THR VAL SER GLY ARG SER ALA ARG VAL VAL PRO SEQRES 3 X 249 ARG ALA ALA ILE GLU TRP TYR GLY PRO ASP ARG PRO LYS SEQRES 4 X 249 PHE LEU GLY PRO PHE SER GLU GLY ASP THR PRO ALA TYR SEQRES 5 X 249 LEU THR GLY GLU PHE PRO GLY ASP TYR GLY TRP ASP THR SEQRES 6 X 249 ALA GLY LEU SER ALA ASP PRO GLU THR PHE LYS ARG TYR SEQRES 7 X 249 ARG GLU LEU GLU LEU ILE HIS ALA ARG TRP ALA MET LEU SEQRES 8 X 249 GLY ALA LEU GLY CYS ILE THR PRO GLU LEU LEU ALA LYS SEQRES 9 X 249 ASN GLY ILE PRO PHE GLY GLU ALA VAL TRP PHE LYS ALA SEQRES 10 X 249 GLY ALA GLN ILE PHE ALA GLU GLY GLY LEU ASN TYR LEU SEQRES 11 X 249 GLY ASN GLU ASN LEU ILE HIS ALA GLN SER ILE ILE ALA SEQRES 12 X 249 THR LEU ALA PHE GLN VAL VAL VAL MET GLY LEU ALA GLU SEQRES 13 X 249 ALA TYR ARG ALA ASN GLY GLY PRO LEU GLY GLU GLY LEU SEQRES 14 X 249 ASP PRO LEU HIS PRO GLY GLY ALA PHE ASP PRO LEU GLY SEQRES 15 X 249 LEU ALA ASP ASP PRO ASP THR PHE ALA GLU LEU LYS VAL SEQRES 16 X 249 LYS GLU ILE LYS ASN GLY ARG LEU ALA MET PHE SER MET SEQRES 17 X 249 PHE GLY PHE PHE VAL GLN ALA ILE VAL THR GLY LYS GLY SEQRES 18 X 249 PRO ILE GLN ASN LEU ASP ASP HIS LEU ALA ASN PRO THR SEQRES 19 X 249 ALA VAL ASN ALA PHE ALA TYR ALA THR LYS PHE THR PRO SEQRES 20 X 249 SER ALA SEQRES 1 Y 257 MET ALA PHE ALA LEU SER PHE SER ARG LYS ALA LEU GLN SEQRES 2 Y 257 VAL SER ALA LYS ALA THR GLY LYS LYS GLY THR GLY LYS SEQRES 3 Y 257 THR ALA ALA LYS GLN ALA PRO ALA SER SER GLY ILE GLU SEQRES 4 Y 257 PHE TYR GLY PRO ASN ARG ALA LYS TRP LEU GLY PRO TYR SEQRES 5 Y 257 SER GLU ASN ALA THR PRO ALA TYR LEU THR GLY GLU PHE SEQRES 6 Y 257 PRO GLY ASP TYR GLY TRP ASP THR ALA GLY LEU SER ALA SEQRES 7 Y 257 ASP PRO GLU THR PHE LYS ARG TYR ARG GLU LEU GLU LEU SEQRES 8 Y 257 ILE HIS ALA ARG TRP ALA MET LEU GLY ALA LEU GLY CYS SEQRES 9 Y 257 ILE THR PRO GLU LEU LEU ALA LYS SER GLY THR GLN PHE SEQRES 10 Y 257 GLY GLU ALA VAL TRP PHE LYS ALA GLY ALA GLN ILE PHE SEQRES 11 Y 257 SER GLU GLY GLY LEU ASP TYR LEU GLY ASN PRO SER LEU SEQRES 12 Y 257 VAL HIS ALA GLN ASN ILE VAL ALA THR LEU ALA VAL GLN SEQRES 13 Y 257 VAL ILE LEU MET GLY LEU VAL GLU GLY TYR ARG VAL ASN SEQRES 14 Y 257 GLY GLY PRO ALA GLY GLU GLY LEU ASP PRO LEU TYR PRO SEQRES 15 Y 257 GLY GLU SER PHE ASP PRO LEU GLY LEU ALA ASP ASP PRO SEQRES 16 Y 257 ASP THR PHE ALA GLU LEU LYS VAL LYS GLU ILE LYS ASN SEQRES 17 Y 257 GLY ARG LEU ALA MET PHE SER MET PHE GLY PHE PHE VAL SEQRES 18 Y 257 GLN ALA ILE VAL THR GLY LYS GLY PRO ILE GLN ASN LEU SEQRES 19 Y 257 ASP ASP HIS LEU SER ASN PRO THR VAL ASN ASN ALA PHE SEQRES 20 Y 257 ALA PHE ALA THR LYS PHE THR PRO SER ALA SEQRES 1 Z 256 MET ALA PHE ALA LEU ALA LYS SER SER ALA ARG ALA ALA SEQRES 2 Z 256 VAL SER ARG ARG SER THR VAL LYS VAL GLU ALA ARG ARG SEQRES 3 Z 256 TPO VAL LYS PRO ALA SER LYS ALA SER THR PRO ASP SER SEQRES 4 Z 256 PHE TRP TYR GLY PRO GLU ARG PRO LEU PHE LEU GLY ALA SEQRES 5 Z 256 PHE THR GLY GLU PRO PRO SER TYR LEU THR GLY GLU PHE SEQRES 6 Z 256 PRO GLY ASP TYR GLY TRP ASP THR ALA GLY LEU SER ALA SEQRES 7 Z 256 ASP PRO GLU THR PHE LYS ARG TYR ARG GLU LEU GLU LEU SEQRES 8 Z 256 ILE HIS ALA ARG TRP ALA MET LEU GLY ALA LEU GLY CYS SEQRES 9 Z 256 ILE PHE PRO GLU LEU LEU GLY SER TYR GLY VAL PRO PHE SEQRES 10 Z 256 GLY GLU ALA VAL TRP PHE LYS ALA GLY ALA GLN ILE PHE SEQRES 11 Z 256 GLN GLU GLY GLY LEU ASP TYR LEU GLY ASN PRO ASN LEU SEQRES 12 Z 256 VAL HIS ALA GLN SER ILE LEU ALA ILE LEU GLY THR GLN SEQRES 13 Z 256 VAL LEU LEU MET GLY ALA ILE GLU GLY TYR ARG VAL ASN SEQRES 14 Z 256 GLY GLY PRO LEU GLY GLU GLY LEU ASP LYS LEU TYR PRO SEQRES 15 Z 256 GLY GLY SER PHE ASP PRO LEU GLY LEU ALA ASP ASP PRO SEQRES 16 Z 256 ASP THR PHE ALA GLU LEU LYS VAL LYS GLU ILE LYS ASN SEQRES 17 Z 256 GLY ARG LEU ALA MET PHE SER MET PHE GLY PHE PHE VAL SEQRES 18 Z 256 GLN ALA ILE VAL THR GLY LYS GLY PRO LEU GLN ASN LEU SEQRES 19 Z 256 SER ASP HIS LEU ALA ASN PRO GLY THR ASN ASN ALA PHE SEQRES 20 Z 256 ALA TYR ALA THR LYS PHE THR PRO GLN MODRES 7E0J TPO Z 27 THR MODIFIED RESIDUE HET TPO Z 27 11 HET CHL X 601 66 HET CLA X 602 65 HET CLA X 603 62 HET CLA X 604 49 HET CHL X 605 46 HET CHL X 607 66 HET CHL X 608 66 HET CHL X 609 66 HET CLA X 610 65 HET CLA X 611 45 HET CLA X 612 43 HET CLA X 613 65 HET CLA X 614 42 HET LUT X1620 42 HET LUT X1621 42 HET XAT X1622 44 HET NEX X1623 44 HET LHG X2630 49 HET CHL Y 601 66 HET CLA Y 602 58 HET CLA Y 603 55 HET CLA Y 604 50 HET CHL Y 605 42 HET CHL Y 606 46 HET CHL Y 607 66 HET CHL Y 608 49 HET CHL Y 609 66 HET CLA Y 610 65 HET CLA Y 611 43 HET CLA Y 612 45 HET CLA Y 613 65 HET CLA Y 614 48 HET LUT Y1620 42 HET LUT Y1621 42 HET XAT Y1622 44 HET NEX Y1623 43 HET LHG Y2630 49 HET CHL Z 601 66 HET CLA Z 602 60 HET CLA Z 603 65 HET CLA Z 604 57 HET CHL Z 605 44 HET CHL Z 606 46 HET CHL Z 607 66 HET CHL Z 608 50 HET CHL Z 609 66 HET CLA Z 610 65 HET CLA Z 611 65 HET CLA Z 612 65 HET CLA Z 613 65 HET CLA Z 614 54 HET LUT Z1620 42 HET LUT Z1621 42 HET XAT Z1622 44 HET NEX Z1623 44 HET LHG Z2630 49 HETNAM TPO PHOSPHOTHREONINE HETNAM CHL CHLOROPHYLL B HETNAM CLA CHLOROPHYLL A HETNAM LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA- HETNAM 2 LUT CAROTENE-3,3'-DIOL HETNAM XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- HETNAM 2 XAT TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL HETNAM NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R, HETNAM 2 NEX 6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT- HETNAM 3 NEX 1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13, HETNAM 4 NEX 15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3- HETNAM 5 NEX DIOL HETNAM LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE HETSYN TPO PHOSPHONOTHREONINE HETSYN LUT (3R,3'R)-BETA,BETA-CAROTENE-3,3'-DIOL; LUTEIN HETSYN XAT VIOLAXANTHIN HETSYN NEX (3S,5R,6R,3'S,5'R,6'S)-5',6'-EPOXY-6,7-DIDEHYDRO- 5,6, HETSYN 2 NEX 5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,5,3'-TRIOL; 9'- HETSYN 3 NEX CIS-NEOXANTHIN FORMUL 3 TPO C4 H10 N O6 P FORMUL 4 CHL 17(C55 H70 MG N4 O6 2+) FORMUL 5 CLA 24(C55 H72 MG N4 O5) FORMUL 17 LUT 6(C40 H56 O2) FORMUL 19 XAT 3(C40 H56 O4) FORMUL 20 NEX 3(C40 H56 O4) FORMUL 21 LHG 3(C38 H75 O10 P) HELIX 1 AA1 LEU X 41 SER X 45 5 5 HELIX 2 AA2 ASP X 71 ASN X 105 1 35 HELIX 3 AA3 VAL X 113 ALA X 117 5 5 HELIX 4 AA4 GLY X 118 ALA X 123 5 6 HELIX 5 AA5 SER X 140 GLY X 162 1 23 HELIX 6 AA6 ASP X 186 GLY X 219 1 34 HELIX 7 AA7 GLY X 221 ASN X 232 1 12 HELIX 8 AA8 ASN X 237 THR X 246 5 10 HELIX 9 AA9 LEU Y 49 SER Y 53 5 5 HELIX 10 AB1 ASP Y 79 SER Y 113 1 35 HELIX 11 AB2 VAL Y 121 ALA Y 125 5 5 HELIX 12 AB3 GLY Y 126 SER Y 131 5 6 HELIX 13 AB4 ASN Y 148 GLY Y 170 1 23 HELIX 14 AB5 ASP Y 194 GLY Y 227 1 34 HELIX 15 AB6 GLY Y 229 ASN Y 240 1 12 HELIX 16 AB7 ASN Y 245 THR Y 254 5 10 HELIX 17 AB8 LEU Z 50 THR Z 54 5 5 HELIX 18 AB9 ASP Z 79 SER Z 112 1 34 HELIX 19 AC1 VAL Z 121 GLY Z 126 1 6 HELIX 20 AC2 ALA Z 127 GLN Z 131 5 5 HELIX 21 AC3 ASP Z 136 ASN Z 140 5 5 HELIX 22 AC4 ILE Z 149 ASN Z 169 1 21 HELIX 23 AC5 GLY Z 183 ASP Z 187 5 5 HELIX 24 AC6 ASP Z 194 VAL Z 225 1 32 HELIX 25 AC7 GLY Z 229 ASN Z 240 1 12 HELIX 26 AC8 ASN Z 245 ALA Z 250 5 6 LINK C ARG Z 26 N TPO Z 27 1555 1555 1.33 LINK C TPO Z 27 N VAL Z 28 1555 1555 1.33 LINK O PHE X 40 MG CHL X 601 1555 1555 2.07 LINK OE2 GLU X 82 MG CLA X 602 1555 1555 2.19 LINK O ILE X 136 MG CHL X 605 1555 1555 2.65 LINK OE1 GLU X 156 MG CHL X 609 1555 1555 2.02 LINK OE2 GLU X 156 MG CHL X 609 1555 1555 2.62 LINK OE2 GLU X 197 MG CLA X 610 1555 1555 2.21 LINK OD1 ASN X 200 MG CLA X 612 1555 1555 2.28 LINK OE1 GLN X 214 MG CLA X 613 1555 1555 2.17 LINK MG CLA X 611 O4 LHG X2630 1555 1555 2.22 LINK O TRP Y 48 MG CHL Y 601 1555 1555 2.01 LINK OE2 GLU Y 90 MG CLA Y 602 1555 1555 2.20 LINK O VAL Y 144 MG CHL Y 605 1555 1555 2.39 LINK OE1 GLU Y 164 MG CHL Y 609 1555 1555 2.03 LINK OE2 GLU Y 164 MG CHL Y 609 1555 1555 2.61 LINK OE2 GLU Y 205 MG CLA Y 610 1555 1555 2.20 LINK OD1 ASN Y 208 MG CLA Y 612 1555 1555 2.25 LINK OE1 GLN Y 222 MG CLA Y 613 1555 1555 2.22 LINK MG CLA Y 611 O4 LHG Y2630 1555 1555 2.21 LINK O PHE Z 49 MG CHL Z 601 1555 1555 2.16 LINK OE2 GLU Z 90 MG CLA Z 602 1555 1555 2.20 LINK O VAL Z 144 MG CHL Z 605 1555 1555 2.26 LINK OE1 GLU Z 164 MG CHL Z 609 1555 1555 2.13 LINK OE2 GLU Z 205 MG CLA Z 610 1555 1555 2.20 LINK OD1 ASN Z 208 MG CLA Z 612 1555 1555 2.23 LINK OE1 GLN Z 222 MG CLA Z 613 1555 1555 2.22 LINK MG CLA Z 611 O4 LHG Z2630 1555 1555 2.20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000