HEADER PHOTOSYNTHESIS 28-JAN-21 7E0J
TITLE LHCII-1 IN THE STATE TRANSITION SUPERCOMPLEX PSI-LHCI-LHCII FROM THE
TITLE 2 DOUBLE PHOSPHATASE MUTANT PPH1;PBCP OF CHLAMYDOMONAS REINHARDTI.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC;
COMPND 3 CHAIN: X;
COMPND 4 MOL_ID: 2;
COMPND 5 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC;
COMPND 6 CHAIN: Y;
COMPND 7 MOL_ID: 3;
COMPND 8 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC;
COMPND 9 CHAIN: Z;
COMPND 10 SYNONYM: LHCBM1
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII;
SOURCE 3 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII;
SOURCE 4 ORGANISM_TAXID: 3055;
SOURCE 5 MOL_ID: 2;
SOURCE 6 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII;
SOURCE 7 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII;
SOURCE 8 ORGANISM_TAXID: 3055;
SOURCE 9 MOL_ID: 3;
SOURCE 10 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII;
SOURCE 11 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII;
SOURCE 12 ORGANISM_TAXID: 3055
KEYWDS SUPERCOMPLEX, LHCII, STATE TRANSITION, GREEN ALGA, CHLAMYDOMONAS
KEYWDS 2 REINHARDTII, PHOTOSYNTHESIS
EXPDTA ELECTRON MICROSCOPY
AUTHOR X.W.PAN,A.J.LI,Z.F.LIU,M.LI
REVDAT 4 23-OCT-24 7E0J 1 REMARK
REVDAT 3 01-SEP-21 7E0J 1 JRNL
REVDAT 2 21-JUL-21 7E0J 1 JRNL FORMUL
REVDAT 1 30-JUN-21 7E0J 0
JRNL AUTH X.PAN,R.TOKUTSU,A.LI,K.TAKIZAWA,C.SONG,K.MURATA,T.YAMASAKI,
JRNL AUTH 2 Z.LIU,J.MINAGAWA,M.LI
JRNL TITL STRUCTURAL BASIS OF LHCBM5-MEDIATED STATE TRANSITIONS IN
JRNL TITL 2 GREEN ALGAE.
JRNL REF NAT.PLANTS V. 7 1119 2021
JRNL REFN ESSN 2055-0278
JRNL PMID 34239095
JRNL DOI 10.1038/S41477-021-00960-8
REMARK 2
REMARK 2 RESOLUTION. 3.13 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 SOFTWARE PACKAGES : NULL
REMARK 3 RECONSTRUCTION SCHEMA : NULL
REMARK 3
REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT
REMARK 3 PDB ENTRY : NULL
REMARK 3 REFINEMENT SPACE : NULL
REMARK 3 REFINEMENT PROTOCOL : NULL
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL
REMARK 3
REMARK 3 FITTING PROCEDURE : NULL
REMARK 3
REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS
REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.130
REMARK 3 NUMBER OF PARTICLES : 55601
REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE
REMARK 3 CORRECTION
REMARK 3
REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL
REMARK 3
REMARK 3 OTHER DETAILS: NULL
REMARK 4
REMARK 4 7E0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-21.
REMARK 100 THE DEPOSITION ID IS D_1300020499.
REMARK 245
REMARK 245 EXPERIMENTAL DETAILS
REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE
REMARK 245 SPECIMEN TYPE : NULL
REMARK 245
REMARK 245 ELECTRON MICROSCOPE SAMPLE
REMARK 245 SAMPLE TYPE : PARTICLE
REMARK 245 PARTICLE TYPE : POINT
REMARK 245 NAME OF SAMPLE : STATE TRANSITION COMPLEX PSI
REMARK 245 -LHCI-LHCII FROM GREEN ALGAE
REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL
REMARK 245 SAMPLE SUPPORT DETAILS : NULL
REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL
REMARK 245 SAMPLE BUFFER : NULL
REMARK 245 PH : 6.50
REMARK 245 SAMPLE DETAILS : NULL
REMARK 245
REMARK 245 DATA ACQUISITION
REMARK 245 DATE OF EXPERIMENT : NULL
REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL
REMARK 245 TEMPERATURE (KELVIN) : NULL
REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA
REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K)
REMARK 245 MINIMUM DEFOCUS (NM) : NULL
REMARK 245 MAXIMUM DEFOCUS (NM) : NULL
REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 NOMINAL CS : NULL
REMARK 245 IMAGING MODE : BRIGHT FIELD
REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 156.25
REMARK 245 ILLUMINATION MODE : FLOOD BEAM
REMARK 245 NOMINAL MAGNIFICATION : NULL
REMARK 245 CALIBRATED MAGNIFICATION : NULL
REMARK 245 SOURCE : FIELD EMISSION GUN
REMARK 245 ACCELERATION VOLTAGE (KV) : 200
REMARK 245 IMAGING DETAILS : NULL
REMARK 247
REMARK 247 ELECTRON MICROSCOPY
REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON
REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE
REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES
REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION
REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET X 1
REMARK 465 ALA X 2
REMARK 465 ALA X 3
REMARK 465 ILE X 4
REMARK 465 MET X 5
REMARK 465 LYS X 6
REMARK 465 SER X 7
REMARK 465 ALA X 8
REMARK 465 VAL X 9
REMARK 465 ARG X 10
REMARK 465 SER X 11
REMARK 465 SER X 12
REMARK 465 VAL X 13
REMARK 465 ARG X 14
REMARK 465 PRO X 15
REMARK 465 THR X 16
REMARK 465 VAL X 17
REMARK 465 SER X 18
REMARK 465 GLY X 19
REMARK 465 ARG X 20
REMARK 465 SER X 21
REMARK 465 ALA X 22
REMARK 465 ARG X 23
REMARK 465 VAL X 24
REMARK 465 VAL X 25
REMARK 465 PRO X 26
REMARK 465 ARG X 27
REMARK 465 ALA X 28
REMARK 465 ALA X 29
REMARK 465 MET Y 1
REMARK 465 ALA Y 2
REMARK 465 PHE Y 3
REMARK 465 ALA Y 4
REMARK 465 LEU Y 5
REMARK 465 SER Y 6
REMARK 465 PHE Y 7
REMARK 465 SER Y 8
REMARK 465 ARG Y 9
REMARK 465 LYS Y 10
REMARK 465 ALA Y 11
REMARK 465 LEU Y 12
REMARK 465 GLN Y 13
REMARK 465 VAL Y 14
REMARK 465 SER Y 15
REMARK 465 ALA Y 16
REMARK 465 LYS Y 17
REMARK 465 ALA Y 18
REMARK 465 THR Y 19
REMARK 465 GLY Y 20
REMARK 465 LYS Y 21
REMARK 465 LYS Y 22
REMARK 465 GLY Y 23
REMARK 465 THR Y 24
REMARK 465 GLY Y 25
REMARK 465 LYS Y 26
REMARK 465 THR Y 27
REMARK 465 ALA Y 28
REMARK 465 ALA Y 29
REMARK 465 LYS Y 30
REMARK 465 GLN Y 31
REMARK 465 ALA Y 32
REMARK 465 PRO Y 33
REMARK 465 ALA Y 34
REMARK 465 SER Y 35
REMARK 465 SER Y 36
REMARK 465 ALA Y 257
REMARK 465 MET Z 1
REMARK 465 ALA Z 2
REMARK 465 PHE Z 3
REMARK 465 ALA Z 4
REMARK 465 LEU Z 5
REMARK 465 ALA Z 6
REMARK 465 LYS Z 7
REMARK 465 SER Z 8
REMARK 465 SER Z 9
REMARK 465 ALA Z 10
REMARK 465 ARG Z 11
REMARK 465 ALA Z 12
REMARK 465 ALA Z 13
REMARK 465 VAL Z 14
REMARK 465 SER Z 15
REMARK 465 ARG Z 16
REMARK 465 ARG Z 17
REMARK 465 SER Z 18
REMARK 465 THR Z 19
REMARK 465 VAL Z 20
REMARK 465 LYS Z 21
REMARK 465 VAL Z 22
REMARK 465 GLU Z 23
REMARK 465 ALA Z 24
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP X 36 37.87 -99.56
REMARK 500 LEU X 135 -60.14 -95.92
REMARK 500 ASN X 232 86.28 -157.57
REMARK 500 ASN Y 44 55.32 -94.46
REMARK 500 VAL Y 144 -52.74 -124.57
REMARK 500 ALA Y 173 50.27 -118.93
REMARK 500 GLU Y 184 -15.82 73.55
REMARK 500 ASN Y 240 86.15 -154.20
REMARK 500 ASN Y 244 32.60 -94.05
REMARK 500 PRO Z 30 -179.73 -64.01
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 CLA X 603
REMARK 610 CLA X 604
REMARK 610 CHL X 605
REMARK 610 CLA X 611
REMARK 610 CLA X 612
REMARK 610 CLA X 614
REMARK 610 CLA Y 602
REMARK 610 CLA Y 603
REMARK 610 CLA Y 604
REMARK 610 CHL Y 605
REMARK 610 CHL Y 606
REMARK 610 CHL Y 608
REMARK 610 CLA Y 611
REMARK 610 CLA Y 612
REMARK 610 CLA Y 614
REMARK 610 NEX Y 1623
REMARK 610 CLA Z 602
REMARK 610 CLA Z 604
REMARK 610 CHL Z 605
REMARK 610 CHL Z 606
REMARK 610 CHL Z 608
REMARK 610 CLA Z 614
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL X 601 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 PHE X 40 O
REMARK 620 2 CHL X 601 NA 95.4
REMARK 620 3 CHL X 601 NB 97.0 92.0
REMARK 620 4 CHL X 601 NC 87.7 175.1 91.3
REMARK 620 5 CHL X 601 ND 88.1 91.4 173.6 85.0
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA X 602 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU X 82 OE2
REMARK 620 2 CLA X 602 NA 88.4
REMARK 620 3 CLA X 602 NB 104.8 90.0
REMARK 620 4 CLA X 602 NC 107.2 163.7 90.4
REMARK 620 5 CLA X 602 ND 92.7 89.7 162.4 85.1
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL X 605 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ILE X 136 O
REMARK 620 2 CHL X 605 NA 74.2
REMARK 620 3 CHL X 605 NB 82.4 91.1
REMARK 620 4 CHL X 605 NC 109.3 176.6 89.6
REMARK 620 5 CHL X 605 ND 104.1 92.0 173.4 86.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL X 609 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU X 156 OE1
REMARK 620 2 CHL X 609 NA 72.7
REMARK 620 3 CHL X 609 NB 72.3 91.2
REMARK 620 4 CHL X 609 NC 113.4 173.9 91.6
REMARK 620 5 CHL X 609 ND 112.0 92.5 175.0 84.4
REMARK 620 6 GLU X 156 OE2 54.5 122.6 92.4 62.6 88.4
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA X 610 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU X 197 OE2
REMARK 620 2 CLA X 610 NA 102.7
REMARK 620 3 CLA X 610 NB 98.2 89.3
REMARK 620 4 CLA X 610 NC 94.6 162.6 90.1
REMARK 620 5 CLA X 610 ND 100.0 89.7 161.5 85.4
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA X 612 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN X 200 OD1
REMARK 620 2 CLA X 612 NA 83.0
REMARK 620 3 CLA X 612 NB 96.2 90.0
REMARK 620 4 CLA X 612 NC 112.2 164.7 90.4
REMARK 620 5 CLA X 612 ND 100.7 90.3 163.1 84.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA X 613 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLN X 214 OE1
REMARK 620 2 CLA X 613 NA 91.4
REMARK 620 3 CLA X 613 NB 126.6 89.4
REMARK 620 4 CLA X 613 NC 103.2 162.2 90.0
REMARK 620 5 CLA X 613 ND 72.3 90.1 161.1 84.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA X 611 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 LHG X2630 O4
REMARK 620 2 CLA X 611 NA 81.1
REMARK 620 3 CLA X 611 NB 110.5 89.8
REMARK 620 4 CLA X 611 NC 113.7 164.0 90.3
REMARK 620 5 CLA X 611 ND 86.9 90.1 162.4 84.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL Y 601 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 TRP Y 48 O
REMARK 620 2 CHL Y 601 NA 99.0
REMARK 620 3 CHL Y 601 NB 97.7 92.1
REMARK 620 4 CHL Y 601 NC 84.1 175.2 91.2
REMARK 620 5 CHL Y 601 ND 87.2 91.4 173.5 85.0
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Y 602 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU Y 90 OE2
REMARK 620 2 CLA Y 602 NA 88.8
REMARK 620 3 CLA Y 602 NB 105.4 89.9
REMARK 620 4 CLA Y 602 NC 106.8 163.8 90.3
REMARK 620 5 CLA Y 602 ND 92.2 89.7 162.4 85.2
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL Y 605 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 VAL Y 144 O
REMARK 620 2 CHL Y 605 NA 85.1
REMARK 620 3 CHL Y 605 NB 85.5 91.2
REMARK 620 4 CHL Y 605 NC 98.2 176.6 89.7
REMARK 620 5 CHL Y 605 ND 100.5 92.0 173.4 86.8
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL Y 609 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU Y 164 OE1
REMARK 620 2 CHL Y 609 NA 71.4
REMARK 620 3 CHL Y 609 NB 73.2 91.2
REMARK 620 4 CHL Y 609 NC 114.6 173.9 91.6
REMARK 620 5 CHL Y 609 ND 111.1 92.5 175.0 84.4
REMARK 620 6 GLU Y 164 OE2 54.6 121.7 92.9 63.5 88.0
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Y 610 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU Y 205 OE2
REMARK 620 2 CLA Y 610 NA 102.3
REMARK 620 3 CLA Y 610 NB 97.0 89.3
REMARK 620 4 CLA Y 610 NC 95.1 162.5 90.1
REMARK 620 5 CLA Y 610 ND 101.4 89.7 161.4 85.3
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Y 612 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN Y 208 OD1
REMARK 620 2 CLA Y 612 NA 84.0
REMARK 620 3 CLA Y 612 NB 96.1 90.0
REMARK 620 4 CLA Y 612 NC 111.2 164.7 90.3
REMARK 620 5 CLA Y 612 ND 100.8 90.4 163.0 84.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Y 613 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLN Y 222 OE1
REMARK 620 2 CLA Y 613 NA 92.3
REMARK 620 3 CLA Y 613 NB 127.6 89.4
REMARK 620 4 CLA Y 613 NC 102.2 162.1 90.0
REMARK 620 5 CLA Y 613 ND 71.3 90.1 161.1 84.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Y 611 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 LHG Y2630 O4
REMARK 620 2 CLA Y 611 NA 81.1
REMARK 620 3 CLA Y 611 NB 110.5 89.8
REMARK 620 4 CLA Y 611 NC 113.8 163.9 90.3
REMARK 620 5 CLA Y 611 ND 86.9 90.1 162.3 85.0
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL Z 601 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 PHE Z 49 O
REMARK 620 2 CHL Z 601 NA 88.9
REMARK 620 3 CHL Z 601 NB 103.1 92.3
REMARK 620 4 CHL Z 601 NC 92.4 176.0 91.0
REMARK 620 5 CHL Z 601 ND 81.6 91.2 174.2 85.3
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Z 602 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU Z 90 OE2
REMARK 620 2 CLA Z 602 NA 91.3
REMARK 620 3 CLA Z 602 NB 104.6 90.0
REMARK 620 4 CLA Z 602 NC 104.2 163.9 90.5
REMARK 620 5 CLA Z 602 ND 92.9 89.7 162.4 85.1
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL Z 605 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 VAL Z 144 O
REMARK 620 2 CHL Z 605 NA 78.2
REMARK 620 3 CHL Z 605 NB 100.7 90.5
REMARK 620 4 CHL Z 605 NC 105.7 175.8 90.3
REMARK 620 5 CHL Z 605 ND 84.0 92.7 174.8 86.3
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CHL Z 609 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU Z 164 OE1
REMARK 620 2 CHL Z 609 NA 93.8
REMARK 620 3 CHL Z 609 NB 87.0 90.9
REMARK 620 4 CHL Z 609 NC 92.0 173.8 91.8
REMARK 620 5 CHL Z 609 ND 92.6 92.7 176.4 84.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Z 610 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU Z 205 OE2
REMARK 620 2 CLA Z 610 NA 108.6
REMARK 620 3 CLA Z 610 NB 99.8 89.0
REMARK 620 4 CLA Z 610 NC 89.4 161.8 90.3
REMARK 620 5 CLA Z 610 ND 98.7 89.6 160.9 85.2
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Z 612 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN Z 208 OD1
REMARK 620 2 CLA Z 612 NA 91.5
REMARK 620 3 CLA Z 612 NB 101.9 90.1
REMARK 620 4 CLA Z 612 NC 103.8 164.2 90.4
REMARK 620 5 CLA Z 612 ND 95.4 90.1 162.7 84.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Z 613 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLN Z 222 OE1
REMARK 620 2 CLA Z 613 NA 93.5
REMARK 620 3 CLA Z 613 NB 115.3 89.5
REMARK 620 4 CLA Z 613 NC 102.5 162.5 90.1
REMARK 620 5 CLA Z 613 ND 83.1 90.2 161.6 84.8
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CLA Z 611 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 LHG Z2630 O4
REMARK 620 2 CLA Z 611 NA 78.2
REMARK 620 3 CLA Z 611 NB 101.9 90.4
REMARK 620 4 CLA Z 611 NC 116.6 164.7 90.2
REMARK 620 5 CLA Z 611 ND 94.6 90.1 163.2 84.9
REMARK 620 N 1 2 3 4
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: EMD-30934 RELATED DB: EMDB
REMARK 900 LHCII-1 IN THE STATE TRANSITION SUPERCOMPLEX PSI-LHCI-LHCII FROM
REMARK 900 THE PPH1;PBCP MUTANT OF CHLAMYDOMONAS REINHARDTII
DBREF 7E0J X 1 249 UNP Q93WE0 Q93WE0_CHLRE 1 249
DBREF 7E0J Y 1 257 UNP Q93WL4 Q93WL4_CHLRE 1 257
DBREF 7E0J Z 1 256 UNP Q93VE0 Q93VE0_CHLRE 1 256
SEQRES 1 X 249 MET ALA ALA ILE MET LYS SER ALA VAL ARG SER SER VAL
SEQRES 2 X 249 ARG PRO THR VAL SER GLY ARG SER ALA ARG VAL VAL PRO
SEQRES 3 X 249 ARG ALA ALA ILE GLU TRP TYR GLY PRO ASP ARG PRO LYS
SEQRES 4 X 249 PHE LEU GLY PRO PHE SER GLU GLY ASP THR PRO ALA TYR
SEQRES 5 X 249 LEU THR GLY GLU PHE PRO GLY ASP TYR GLY TRP ASP THR
SEQRES 6 X 249 ALA GLY LEU SER ALA ASP PRO GLU THR PHE LYS ARG TYR
SEQRES 7 X 249 ARG GLU LEU GLU LEU ILE HIS ALA ARG TRP ALA MET LEU
SEQRES 8 X 249 GLY ALA LEU GLY CYS ILE THR PRO GLU LEU LEU ALA LYS
SEQRES 9 X 249 ASN GLY ILE PRO PHE GLY GLU ALA VAL TRP PHE LYS ALA
SEQRES 10 X 249 GLY ALA GLN ILE PHE ALA GLU GLY GLY LEU ASN TYR LEU
SEQRES 11 X 249 GLY ASN GLU ASN LEU ILE HIS ALA GLN SER ILE ILE ALA
SEQRES 12 X 249 THR LEU ALA PHE GLN VAL VAL VAL MET GLY LEU ALA GLU
SEQRES 13 X 249 ALA TYR ARG ALA ASN GLY GLY PRO LEU GLY GLU GLY LEU
SEQRES 14 X 249 ASP PRO LEU HIS PRO GLY GLY ALA PHE ASP PRO LEU GLY
SEQRES 15 X 249 LEU ALA ASP ASP PRO ASP THR PHE ALA GLU LEU LYS VAL
SEQRES 16 X 249 LYS GLU ILE LYS ASN GLY ARG LEU ALA MET PHE SER MET
SEQRES 17 X 249 PHE GLY PHE PHE VAL GLN ALA ILE VAL THR GLY LYS GLY
SEQRES 18 X 249 PRO ILE GLN ASN LEU ASP ASP HIS LEU ALA ASN PRO THR
SEQRES 19 X 249 ALA VAL ASN ALA PHE ALA TYR ALA THR LYS PHE THR PRO
SEQRES 20 X 249 SER ALA
SEQRES 1 Y 257 MET ALA PHE ALA LEU SER PHE SER ARG LYS ALA LEU GLN
SEQRES 2 Y 257 VAL SER ALA LYS ALA THR GLY LYS LYS GLY THR GLY LYS
SEQRES 3 Y 257 THR ALA ALA LYS GLN ALA PRO ALA SER SER GLY ILE GLU
SEQRES 4 Y 257 PHE TYR GLY PRO ASN ARG ALA LYS TRP LEU GLY PRO TYR
SEQRES 5 Y 257 SER GLU ASN ALA THR PRO ALA TYR LEU THR GLY GLU PHE
SEQRES 6 Y 257 PRO GLY ASP TYR GLY TRP ASP THR ALA GLY LEU SER ALA
SEQRES 7 Y 257 ASP PRO GLU THR PHE LYS ARG TYR ARG GLU LEU GLU LEU
SEQRES 8 Y 257 ILE HIS ALA ARG TRP ALA MET LEU GLY ALA LEU GLY CYS
SEQRES 9 Y 257 ILE THR PRO GLU LEU LEU ALA LYS SER GLY THR GLN PHE
SEQRES 10 Y 257 GLY GLU ALA VAL TRP PHE LYS ALA GLY ALA GLN ILE PHE
SEQRES 11 Y 257 SER GLU GLY GLY LEU ASP TYR LEU GLY ASN PRO SER LEU
SEQRES 12 Y 257 VAL HIS ALA GLN ASN ILE VAL ALA THR LEU ALA VAL GLN
SEQRES 13 Y 257 VAL ILE LEU MET GLY LEU VAL GLU GLY TYR ARG VAL ASN
SEQRES 14 Y 257 GLY GLY PRO ALA GLY GLU GLY LEU ASP PRO LEU TYR PRO
SEQRES 15 Y 257 GLY GLU SER PHE ASP PRO LEU GLY LEU ALA ASP ASP PRO
SEQRES 16 Y 257 ASP THR PHE ALA GLU LEU LYS VAL LYS GLU ILE LYS ASN
SEQRES 17 Y 257 GLY ARG LEU ALA MET PHE SER MET PHE GLY PHE PHE VAL
SEQRES 18 Y 257 GLN ALA ILE VAL THR GLY LYS GLY PRO ILE GLN ASN LEU
SEQRES 19 Y 257 ASP ASP HIS LEU SER ASN PRO THR VAL ASN ASN ALA PHE
SEQRES 20 Y 257 ALA PHE ALA THR LYS PHE THR PRO SER ALA
SEQRES 1 Z 256 MET ALA PHE ALA LEU ALA LYS SER SER ALA ARG ALA ALA
SEQRES 2 Z 256 VAL SER ARG ARG SER THR VAL LYS VAL GLU ALA ARG ARG
SEQRES 3 Z 256 TPO VAL LYS PRO ALA SER LYS ALA SER THR PRO ASP SER
SEQRES 4 Z 256 PHE TRP TYR GLY PRO GLU ARG PRO LEU PHE LEU GLY ALA
SEQRES 5 Z 256 PHE THR GLY GLU PRO PRO SER TYR LEU THR GLY GLU PHE
SEQRES 6 Z 256 PRO GLY ASP TYR GLY TRP ASP THR ALA GLY LEU SER ALA
SEQRES 7 Z 256 ASP PRO GLU THR PHE LYS ARG TYR ARG GLU LEU GLU LEU
SEQRES 8 Z 256 ILE HIS ALA ARG TRP ALA MET LEU GLY ALA LEU GLY CYS
SEQRES 9 Z 256 ILE PHE PRO GLU LEU LEU GLY SER TYR GLY VAL PRO PHE
SEQRES 10 Z 256 GLY GLU ALA VAL TRP PHE LYS ALA GLY ALA GLN ILE PHE
SEQRES 11 Z 256 GLN GLU GLY GLY LEU ASP TYR LEU GLY ASN PRO ASN LEU
SEQRES 12 Z 256 VAL HIS ALA GLN SER ILE LEU ALA ILE LEU GLY THR GLN
SEQRES 13 Z 256 VAL LEU LEU MET GLY ALA ILE GLU GLY TYR ARG VAL ASN
SEQRES 14 Z 256 GLY GLY PRO LEU GLY GLU GLY LEU ASP LYS LEU TYR PRO
SEQRES 15 Z 256 GLY GLY SER PHE ASP PRO LEU GLY LEU ALA ASP ASP PRO
SEQRES 16 Z 256 ASP THR PHE ALA GLU LEU LYS VAL LYS GLU ILE LYS ASN
SEQRES 17 Z 256 GLY ARG LEU ALA MET PHE SER MET PHE GLY PHE PHE VAL
SEQRES 18 Z 256 GLN ALA ILE VAL THR GLY LYS GLY PRO LEU GLN ASN LEU
SEQRES 19 Z 256 SER ASP HIS LEU ALA ASN PRO GLY THR ASN ASN ALA PHE
SEQRES 20 Z 256 ALA TYR ALA THR LYS PHE THR PRO GLN
MODRES 7E0J TPO Z 27 THR MODIFIED RESIDUE
HET TPO Z 27 11
HET CHL X 601 66
HET CLA X 602 65
HET CLA X 603 62
HET CLA X 604 49
HET CHL X 605 46
HET CHL X 607 66
HET CHL X 608 66
HET CHL X 609 66
HET CLA X 610 65
HET CLA X 611 45
HET CLA X 612 43
HET CLA X 613 65
HET CLA X 614 42
HET LUT X1620 42
HET LUT X1621 42
HET XAT X1622 44
HET NEX X1623 44
HET LHG X2630 49
HET CHL Y 601 66
HET CLA Y 602 58
HET CLA Y 603 55
HET CLA Y 604 50
HET CHL Y 605 42
HET CHL Y 606 46
HET CHL Y 607 66
HET CHL Y 608 49
HET CHL Y 609 66
HET CLA Y 610 65
HET CLA Y 611 43
HET CLA Y 612 45
HET CLA Y 613 65
HET CLA Y 614 48
HET LUT Y1620 42
HET LUT Y1621 42
HET XAT Y1622 44
HET NEX Y1623 43
HET LHG Y2630 49
HET CHL Z 601 66
HET CLA Z 602 60
HET CLA Z 603 65
HET CLA Z 604 57
HET CHL Z 605 44
HET CHL Z 606 46
HET CHL Z 607 66
HET CHL Z 608 50
HET CHL Z 609 66
HET CLA Z 610 65
HET CLA Z 611 65
HET CLA Z 612 65
HET CLA Z 613 65
HET CLA Z 614 54
HET LUT Z1620 42
HET LUT Z1621 42
HET XAT Z1622 44
HET NEX Z1623 44
HET LHG Z2630 49
HETNAM TPO PHOSPHOTHREONINE
HETNAM CHL CHLOROPHYLL B
HETNAM CLA CHLOROPHYLL A
HETNAM LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-
HETNAM 2 LUT CAROTENE-3,3'-DIOL
HETNAM XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'-
HETNAM 2 XAT TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
HETNAM NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,
HETNAM 2 NEX 6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-
HETNAM 3 NEX 1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,
HETNAM 4 NEX 15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-
HETNAM 5 NEX DIOL
HETNAM LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
HETSYN TPO PHOSPHONOTHREONINE
HETSYN LUT (3R,3'R)-BETA,BETA-CAROTENE-3,3'-DIOL; LUTEIN
HETSYN XAT VIOLAXANTHIN
HETSYN NEX (3S,5R,6R,3'S,5'R,6'S)-5',6'-EPOXY-6,7-DIDEHYDRO- 5,6,
HETSYN 2 NEX 5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,5,3'-TRIOL; 9'-
HETSYN 3 NEX CIS-NEOXANTHIN
FORMUL 3 TPO C4 H10 N O6 P
FORMUL 4 CHL 17(C55 H70 MG N4 O6 2+)
FORMUL 5 CLA 24(C55 H72 MG N4 O5)
FORMUL 17 LUT 6(C40 H56 O2)
FORMUL 19 XAT 3(C40 H56 O4)
FORMUL 20 NEX 3(C40 H56 O4)
FORMUL 21 LHG 3(C38 H75 O10 P)
HELIX 1 AA1 LEU X 41 SER X 45 5 5
HELIX 2 AA2 ASP X 71 ASN X 105 1 35
HELIX 3 AA3 VAL X 113 ALA X 117 5 5
HELIX 4 AA4 GLY X 118 ALA X 123 5 6
HELIX 5 AA5 SER X 140 GLY X 162 1 23
HELIX 6 AA6 ASP X 186 GLY X 219 1 34
HELIX 7 AA7 GLY X 221 ASN X 232 1 12
HELIX 8 AA8 ASN X 237 THR X 246 5 10
HELIX 9 AA9 LEU Y 49 SER Y 53 5 5
HELIX 10 AB1 ASP Y 79 SER Y 113 1 35
HELIX 11 AB2 VAL Y 121 ALA Y 125 5 5
HELIX 12 AB3 GLY Y 126 SER Y 131 5 6
HELIX 13 AB4 ASN Y 148 GLY Y 170 1 23
HELIX 14 AB5 ASP Y 194 GLY Y 227 1 34
HELIX 15 AB6 GLY Y 229 ASN Y 240 1 12
HELIX 16 AB7 ASN Y 245 THR Y 254 5 10
HELIX 17 AB8 LEU Z 50 THR Z 54 5 5
HELIX 18 AB9 ASP Z 79 SER Z 112 1 34
HELIX 19 AC1 VAL Z 121 GLY Z 126 1 6
HELIX 20 AC2 ALA Z 127 GLN Z 131 5 5
HELIX 21 AC3 ASP Z 136 ASN Z 140 5 5
HELIX 22 AC4 ILE Z 149 ASN Z 169 1 21
HELIX 23 AC5 GLY Z 183 ASP Z 187 5 5
HELIX 24 AC6 ASP Z 194 VAL Z 225 1 32
HELIX 25 AC7 GLY Z 229 ASN Z 240 1 12
HELIX 26 AC8 ASN Z 245 ALA Z 250 5 6
LINK C ARG Z 26 N TPO Z 27 1555 1555 1.33
LINK C TPO Z 27 N VAL Z 28 1555 1555 1.33
LINK O PHE X 40 MG CHL X 601 1555 1555 2.07
LINK OE2 GLU X 82 MG CLA X 602 1555 1555 2.19
LINK O ILE X 136 MG CHL X 605 1555 1555 2.65
LINK OE1 GLU X 156 MG CHL X 609 1555 1555 2.02
LINK OE2 GLU X 156 MG CHL X 609 1555 1555 2.62
LINK OE2 GLU X 197 MG CLA X 610 1555 1555 2.21
LINK OD1 ASN X 200 MG CLA X 612 1555 1555 2.28
LINK OE1 GLN X 214 MG CLA X 613 1555 1555 2.17
LINK MG CLA X 611 O4 LHG X2630 1555 1555 2.22
LINK O TRP Y 48 MG CHL Y 601 1555 1555 2.01
LINK OE2 GLU Y 90 MG CLA Y 602 1555 1555 2.20
LINK O VAL Y 144 MG CHL Y 605 1555 1555 2.39
LINK OE1 GLU Y 164 MG CHL Y 609 1555 1555 2.03
LINK OE2 GLU Y 164 MG CHL Y 609 1555 1555 2.61
LINK OE2 GLU Y 205 MG CLA Y 610 1555 1555 2.20
LINK OD1 ASN Y 208 MG CLA Y 612 1555 1555 2.25
LINK OE1 GLN Y 222 MG CLA Y 613 1555 1555 2.22
LINK MG CLA Y 611 O4 LHG Y2630 1555 1555 2.21
LINK O PHE Z 49 MG CHL Z 601 1555 1555 2.16
LINK OE2 GLU Z 90 MG CLA Z 602 1555 1555 2.20
LINK O VAL Z 144 MG CHL Z 605 1555 1555 2.26
LINK OE1 GLU Z 164 MG CHL Z 609 1555 1555 2.13
LINK OE2 GLU Z 205 MG CLA Z 610 1555 1555 2.20
LINK OD1 ASN Z 208 MG CLA Z 612 1555 1555 2.23
LINK OE1 GLN Z 222 MG CLA Z 613 1555 1555 2.22
LINK MG CLA Z 611 O4 LHG Z2630 1555 1555 2.20
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000