HEADER HYDROLASE 01-FEB-21 7E18 TITLE CRYSTAL STRUCTURE OF SAR-COV-2 3CL PROTEASE COMPLEX WITH INHIBITOR YH- TITLE 2 53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 5 EC: 3.4.22.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SARS-COV-2 3CL PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SENDA,S.KONNO,Y.HAYASHI,T.SENDA REVDAT 4 29-NOV-23 7E18 1 REMARK REVDAT 3 09-MAR-22 7E18 1 JRNL REVDAT 2 11-AUG-21 7E18 1 JRNL REVDAT 1 23-JUN-21 7E18 0 JRNL AUTH S.KONNO,K.KOBAYASHI,M.SENDA,Y.FUNAI,Y.SEKI,I.TAMAI, JRNL AUTH 2 L.SCHAKEL,K.SAKATA,T.PILLAIYAR,A.TAGUCHI,A.TANIGUCHI, JRNL AUTH 3 M.GUTSCHOW,C.E.MULLER,K.TAKEUCHI,M.HIROHAMA,A.KAWAGUCHI, JRNL AUTH 4 M.KOJIMA,T.SENDA,Y.SHIRASAKA,W.KAMITANI,Y.HAYASHI JRNL TITL 3CL PROTEASE INHIBITORS WITH AN ELECTROPHILIC ARYLKETONE JRNL TITL 2 MOIETY AS ANTI-SARS-COV-2 AGENTS. JRNL REF J.MED.CHEM. V. 65 2926 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34313428 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00665 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9500 - 4.1600 0.99 2652 140 0.1508 0.1599 REMARK 3 2 4.1500 - 3.3000 0.99 2615 138 0.1676 0.1514 REMARK 3 3 3.3000 - 2.8800 1.00 2590 136 0.1923 0.2202 REMARK 3 4 2.8800 - 2.6200 0.99 2599 137 0.1980 0.2071 REMARK 3 5 2.6200 - 2.4300 1.00 2591 136 0.1941 0.2044 REMARK 3 6 2.4300 - 2.2900 1.00 2622 138 0.1895 0.2180 REMARK 3 7 2.2900 - 2.1700 1.00 2570 136 0.1852 0.2269 REMARK 3 8 2.1700 - 2.0800 1.00 2604 137 0.1830 0.1940 REMARK 3 9 2.0800 - 2.0000 1.00 2578 135 0.1938 0.2487 REMARK 3 10 2.0000 - 1.9300 1.00 2590 137 0.1887 0.2039 REMARK 3 11 1.9300 - 1.8700 0.99 2568 135 0.2023 0.2195 REMARK 3 12 1.8700 - 1.8200 1.00 2604 137 0.2051 0.2457 REMARK 3 13 1.8200 - 1.7700 0.99 2566 135 0.2477 0.3237 REMARK 3 14 1.7700 - 1.7300 1.00 2576 136 0.2597 0.3184 REMARK 3 15 1.7300 - 1.6900 1.00 2577 135 0.2575 0.2924 REMARK 3 16 1.6900 - 1.6500 0.99 2584 136 0.2565 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.196 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.954 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2410 REMARK 3 ANGLE : 1.050 3276 REMARK 3 CHIRALITY : 0.061 370 REMARK 3 PLANARITY : 0.009 425 REMARK 3 DIHEDRAL : 10.862 380 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0904 9.5914 12.3453 REMARK 3 T TENSOR REMARK 3 T11: 0.2445 T22: 0.1625 REMARK 3 T33: 0.2303 T12: -0.0596 REMARK 3 T13: 0.0329 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9297 L22: 1.6750 REMARK 3 L33: 3.3270 L12: 0.5388 REMARK 3 L13: 0.1607 L23: 0.9407 REMARK 3 S TENSOR REMARK 3 S11: 0.1286 S12: -0.1048 S13: 0.0926 REMARK 3 S21: -0.1454 S22: 0.0003 S23: -0.1867 REMARK 3 S31: -0.4281 S32: 0.2210 S33: -0.1156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3725 15.6957 24.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.3689 T22: 0.2861 REMARK 3 T33: 0.3274 T12: -0.1314 REMARK 3 T13: 0.0167 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 0.9150 L22: 2.8363 REMARK 3 L33: 2.6960 L12: 0.1928 REMARK 3 L13: 0.4110 L23: -0.2709 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.0852 S13: 0.1730 REMARK 3 S21: 0.1648 S22: -0.1040 S23: -0.4563 REMARK 3 S31: -0.5340 S32: 0.5454 S33: 0.1068 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9469 0.7679 11.3333 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1239 REMARK 3 T33: 0.1401 T12: -0.0293 REMARK 3 T13: -0.0088 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.2518 L22: 3.0431 REMARK 3 L33: 3.1927 L12: -0.3273 REMARK 3 L13: -0.6390 L23: 0.4297 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0432 S13: 0.0522 REMARK 3 S21: -0.1549 S22: 0.0121 S23: -0.0151 REMARK 3 S31: -0.2056 S32: 0.0827 S33: 0.0067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6843 -5.6361 15.8517 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1133 REMARK 3 T33: 0.1704 T12: -0.0189 REMARK 3 T13: 0.0000 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.9321 L22: 1.2302 REMARK 3 L33: 3.2037 L12: 0.4408 REMARK 3 L13: 0.0089 L23: 0.8842 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: -0.0497 S13: -0.1364 REMARK 3 S21: 0.1200 S22: 0.0017 S23: -0.0706 REMARK 3 S31: 0.1924 S32: 0.0911 S33: -0.0455 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7980 -20.4961 3.6778 REMARK 3 T TENSOR REMARK 3 T11: 0.4196 T22: 0.4679 REMARK 3 T33: 0.3307 T12: -0.2183 REMARK 3 T13: 0.0597 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 2.4997 L22: 2.6960 REMARK 3 L33: 2.5177 L12: 1.1871 REMARK 3 L13: 1.6545 L23: 0.8753 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: -0.4407 S13: -0.1140 REMARK 3 S21: 0.4046 S22: -0.2526 S23: 0.3750 REMARK 3 S31: 0.8032 S32: -1.2633 S33: 0.1320 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4810 -13.3392 -1.1415 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.2217 REMARK 3 T33: 0.2032 T12: -0.0553 REMARK 3 T13: 0.0247 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 5.1986 L22: 4.0032 REMARK 3 L33: 5.3721 L12: -0.0139 REMARK 3 L13: 1.6524 L23: -0.4493 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.2968 S13: 0.0491 REMARK 3 S21: -0.2807 S22: -0.0398 S23: -0.1973 REMARK 3 S31: -0.0577 S32: 0.0806 S33: 0.0812 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 47.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6Y2F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%(W/V) PEG4000, 0.1 M SODIUM ACETATE REMARK 280 PH 4.6, 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.57700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.33650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.57700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.33650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 46 OG REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 PHE A 223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 224 OG1 CG2 REMARK 470 THR A 225 OG1 CG2 REMARK 470 ASN A 228 CG OD1 ND2 REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 LEU A 232 CG CD1 CD2 REMARK 470 VAL A 233 CG1 CG2 REMARK 470 MET A 235 CG SD CE REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 SER A 301 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 145 C19 HUR A 401 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -133.81 54.64 REMARK 500 ASN A 51 75.50 -155.40 REMARK 500 ASN A 84 -120.36 53.39 REMARK 500 TYR A 154 -112.53 49.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 7E18 A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN HET HUR A 401 41 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM HUR N-[(2S)-1-[[(2S)-1-(1,3-BENZOTHIAZOL-2-YL)-1- HETNAM 2 HUR OXIDANYLIDENE-3-[(3S)-2-OXIDANYLIDENEPYRROLIDIN-3- HETNAM 3 HUR YL]PROPAN-2-YL]AMINO]-4-METHYL-1-OXIDANYLIDENE-PENTAN- HETNAM 4 HUR 2-YL]-4-METHOXY-1H-INDOLE-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HUR C30 H33 N5 O5 S FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 HOH *163(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 SER A 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O TYR A 126 N VAL A 114 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 CRYST1 95.154 82.673 51.599 90.00 114.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010509 0.000000 0.004689 0.00000 SCALE2 0.000000 0.012096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021222 0.00000