HEADER LYASE 07-FEB-21 7E2P TITLE THE CRYSTAL STRUCTURE OF MYCOPLASMA BOVIS ENOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 5 DEHYDRATASE; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA BOVIS; SOURCE 3 ORGANISM_TAXID: 28903; SOURCE 4 GENE: ENO, H0I36_02020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI O104:H4 STR. 2009EL-2050; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1134782 KEYWDS MOON LIGHT PROTEIN, PHOSPHOPYRUVATE HYDRATASE, CELL ADHESION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CHEN,S.ZHANG,R.GAN,W.WANG,T.RAN,G.SHAO,Q.XIONG,Z.FENG REVDAT 2 29-NOV-23 7E2P 1 REMARK REVDAT 1 02-FEB-22 7E2P 0 JRNL AUTH R.CHEN,L.ZHAO,R.GAN,Z.FENG,C.CUI,X.XIE,F.HAO,Z.ZHANG,L.WANG, JRNL AUTH 2 T.RAN,W.WANG,S.ZHANG,Y.LI,W.ZHANG,M.PANG,Q.XIONG,G.SHAO JRNL TITL EVIDENCE FOR THE RAPID AND DIVERGENT EVOLUTION OF JRNL TITL 2 MYCOPLASMAS: STRUCTURAL AND PHYLOGENETIC ANALYSIS OF JRNL TITL 3 ENOLASES. JRNL REF FRONT MOL BIOSCI V. 8 11106 2022 JRNL REFN ESSN 2296-889X JRNL DOI 10.3389/FMOLB.2021.811106 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 114829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 5819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7200 - 5.2500 1.00 3774 218 0.1459 0.1605 REMARK 3 2 5.2500 - 4.1800 1.00 3750 192 0.1210 0.1459 REMARK 3 3 4.1800 - 3.6600 1.00 3709 223 0.1373 0.1421 REMARK 3 4 3.6600 - 3.3200 1.00 3750 186 0.1655 0.1908 REMARK 3 5 3.3200 - 3.0900 1.00 3653 230 0.1805 0.1950 REMARK 3 6 3.0900 - 2.9000 1.00 3730 197 0.1778 0.1978 REMARK 3 7 2.9000 - 2.7600 1.00 3697 209 0.1765 0.1892 REMARK 3 8 2.7600 - 2.6400 1.00 3754 165 0.1716 0.1934 REMARK 3 9 2.6400 - 2.5400 1.00 3681 182 0.1711 0.2055 REMARK 3 10 2.5400 - 2.4500 1.00 3709 226 0.1717 0.2059 REMARK 3 11 2.4500 - 2.3700 1.00 3656 198 0.1699 0.2062 REMARK 3 12 2.3700 - 2.3100 1.00 3743 209 0.1573 0.1820 REMARK 3 13 2.3100 - 2.2500 1.00 3695 197 0.1508 0.1749 REMARK 3 14 2.2500 - 2.1900 1.00 3680 188 0.1505 0.1763 REMARK 3 15 2.1900 - 2.1400 1.00 3720 195 0.1562 0.2058 REMARK 3 16 2.1400 - 2.1000 1.00 3670 204 0.1639 0.1925 REMARK 3 17 2.1000 - 2.0500 1.00 3760 201 0.1614 0.1825 REMARK 3 18 2.0500 - 2.0200 1.00 3663 187 0.1594 0.2078 REMARK 3 19 2.0200 - 1.9800 1.00 3711 166 0.1581 0.1971 REMARK 3 20 1.9800 - 1.9500 1.00 3682 211 0.1563 0.2046 REMARK 3 21 1.9500 - 1.9100 1.00 3681 203 0.1618 0.2093 REMARK 3 22 1.9100 - 1.8900 1.00 3664 215 0.1666 0.1950 REMARK 3 23 1.8900 - 1.8600 1.00 3665 202 0.1659 0.2096 REMARK 3 24 1.8600 - 1.8300 1.00 3676 201 0.1721 0.2167 REMARK 3 25 1.8300 - 1.8100 0.99 3647 179 0.1824 0.2148 REMARK 3 26 1.8100 - 1.7800 0.99 3659 203 0.1754 0.2269 REMARK 3 27 1.7800 - 1.7600 0.94 3466 181 0.1845 0.2192 REMARK 3 28 1.7600 - 1.7400 0.88 3290 136 0.1951 0.2439 REMARK 3 29 1.7400 - 1.7200 0.84 3131 161 0.2083 0.2817 REMARK 3 30 1.7200 - 1.7000 0.80 2944 154 0.2145 0.2612 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.159 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.703 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6947 REMARK 3 ANGLE : 1.285 9364 REMARK 3 CHIRALITY : 0.116 1074 REMARK 3 PLANARITY : 0.008 1211 REMARK 3 DIHEDRAL : 13.127 4240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0473 -28.4391 -8.8148 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.2322 REMARK 3 T33: 0.1959 T12: 0.0156 REMARK 3 T13: 0.0164 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.0485 L22: 0.6281 REMARK 3 L33: 0.8404 L12: 0.1320 REMARK 3 L13: -0.2078 L23: 0.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.1800 S13: 0.0136 REMARK 3 S21: -0.1193 S22: -0.0077 S23: 0.0353 REMARK 3 S31: -0.0337 S32: -0.0768 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7103 -56.2309 7.1219 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.2156 REMARK 3 T33: 0.3133 T12: 0.0341 REMARK 3 T13: 0.0363 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.2820 L22: 0.9684 REMARK 3 L33: 0.5793 L12: 0.1469 REMARK 3 L13: 0.1861 L23: 0.1017 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.0170 S13: -0.2539 REMARK 3 S21: 0.0629 S22: -0.0062 S23: -0.1463 REMARK 3 S31: 0.2146 S32: 0.1083 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5517 -45.3428 2.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.2685 T22: 0.2174 REMARK 3 T33: 0.2550 T12: -0.0003 REMARK 3 T13: 0.0199 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6583 L22: 0.6896 REMARK 3 L33: 0.4670 L12: -0.0436 REMARK 3 L13: -0.0590 L23: 0.0902 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0250 S13: -0.1153 REMARK 3 S21: -0.0415 S22: -0.0272 S23: 0.0303 REMARK 3 S31: 0.1008 S32: -0.0456 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1303 -17.8290 17.3253 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.2453 REMARK 3 T33: 0.2155 T12: 0.0152 REMARK 3 T13: 0.0129 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.4098 L22: 0.9947 REMARK 3 L33: 0.8117 L12: 0.3029 REMARK 3 L13: -0.0582 L23: -0.2290 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.0950 S13: 0.0512 REMARK 3 S21: 0.1636 S22: -0.0350 S23: 0.0031 REMARK 3 S31: -0.0954 S32: -0.0292 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0800 -35.0092 1.1334 REMARK 3 T TENSOR REMARK 3 T11: 0.2654 T22: 0.2948 REMARK 3 T33: 0.3828 T12: 0.0505 REMARK 3 T13: 0.0490 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.9624 L22: 1.3066 REMARK 3 L33: 0.4464 L12: 0.4640 REMARK 3 L13: -0.1470 L23: 0.4213 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0359 S13: -0.2881 REMARK 3 S21: 0.0718 S22: -0.0055 S23: -0.3368 REMARK 3 S31: 0.1940 S32: 0.1198 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 306 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0432 -17.2195 5.6887 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2691 REMARK 3 T33: 0.2645 T12: 0.0105 REMARK 3 T13: 0.0224 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.5739 L22: 0.7373 REMARK 3 L33: 0.3614 L12: 0.0604 REMARK 3 L13: 0.1274 L23: 0.1038 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0183 S13: -0.0145 REMARK 3 S21: 0.0138 S22: 0.0017 S23: -0.1471 REMARK 3 S31: -0.0072 S32: 0.0837 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT ATLAS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115149 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6J36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.14M CALCIUM CHLORIDE DIHYDRATE, REMARK 280 0.07M SODIUM ACETATE TRIHYDRATE PH 4.6, 14% V/V 2-PROPANOL, 30% REMARK 280 V/V GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 71.11050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.11050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.71100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 71.11050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.11050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.71100 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 71.11050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 71.11050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.71100 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 71.11050 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 71.11050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.71100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 117210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 THR A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 465 ARG A 46 REMARK 465 LEU A 455 REMARK 465 GLU A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 MET B 1 REMARK 465 ALA B 41 REMARK 465 SER B 42 REMARK 465 THR B 43 REMARK 465 GLY B 44 REMARK 465 LEU B 455 REMARK 465 GLU B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 146 CA - CB - CG ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP B 14 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 124 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU B 146 CA - CB - CG ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG B 421 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -52.41 -12.95 REMARK 500 HIS A 144 1.14 -152.15 REMARK 500 ASN A 215 49.50 -83.31 REMARK 500 ASP A 339 -80.93 -124.26 REMARK 500 VAL A 343 47.80 32.57 REMARK 500 MET A 419 36.45 -96.18 REMARK 500 ARG A 421 125.78 83.81 REMARK 500 HIS B 144 -1.32 -154.61 REMARK 500 HIS B 159 -16.29 85.42 REMARK 500 ALA B 213 70.20 -118.98 REMARK 500 ASN B 215 47.23 -80.37 REMARK 500 PHE B 280 60.91 -111.80 REMARK 500 ASP B 339 -81.23 -123.14 REMARK 500 VAL B 343 46.80 36.56 REMARK 500 THR B 416 26.14 -143.40 REMARK 500 MET B 419 35.63 -91.43 REMARK 500 ARG B 421 128.02 84.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 27 ASP A 28 148.97 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7E2P A 1 454 UNP A0A7D5V839_MYCBV DBREF2 7E2P A A0A7D5V839 1 454 DBREF1 7E2P B 1 454 UNP A0A7D5V839_MYCBV DBREF2 7E2P B A0A7D5V839 1 454 SEQADV 7E2P LEU A 455 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P GLU A 456 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS A 457 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS A 458 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS A 459 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS A 460 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS A 461 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS A 462 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P LEU B 455 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P GLU B 456 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS B 457 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS B 458 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS B 459 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS B 460 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS B 461 UNP A0A7D5V83 EXPRESSION TAG SEQADV 7E2P HIS B 462 UNP A0A7D5V83 EXPRESSION TAG SEQRES 1 A 462 MET PRO ILE ILE GLU ARG ILE GLN ALA ARG GLU ILE LEU SEQRES 2 A 462 ASP SER ARG GLY ASN PRO THR VAL GLN VAL GLU VAL THR SEQRES 3 A 462 THR ASP TYR GLU ILE THR GLY VAL ALA ASN VAL PRO SER SEQRES 4 A 462 GLY ALA SER THR GLY SER ARG GLU ALA LEU GLU LEU ARG SEQRES 5 A 462 ASP LYS GLY THR LYS TYR GLU GLY ASN TRP PHE GLY GLY SEQRES 6 A 462 LYS GLY VAL MET THR ALA VAL ASP ASN VAL ASN GLU LYS SEQRES 7 A 462 ILE ALA PRO GLU LEU ILE GLY MET SER VAL PHE ASP GLN SEQRES 8 A 462 ARG ALA ILE ASP LYS LEU MET ILE GLU LEU ASP GLY THR SEQRES 9 A 462 ALA THR LYS SER LYS LEU GLY ALA ASN ALA ILE LEU GLY SEQRES 10 A 462 VAL SER LEU ALA VAL ALA ARG ALA ALA ALA THR GLU LEU SEQRES 11 A 462 GLY MET PRO LEU TYR ARG TYR ILE GLY GLY ALA ASN ALA SEQRES 12 A 462 HIS THR LEU PRO LEU PRO MET LEU ASN VAL LEU ASN GLY SEQRES 13 A 462 GLY GLU HIS ALA SER ASN THR VAL ASP PHE GLN GLU PHE SEQRES 14 A 462 MET ILE MET PRO VAL GLY ALA LYS SER LEU ARG GLU ALA SEQRES 15 A 462 LEU GLN MET ALA ASN LYS VAL PHE HIS ASN LEU ALA LYS SEQRES 16 A 462 LEU LEU LYS LYS ALA GLY TYR GLY THR GLN VAL GLY ASP SEQRES 17 A 462 GLU GLY GLY PHE ALA PRO ASN CYS LYS SER HIS GLU GLU SEQRES 18 A 462 VAL LEU ASP TYR LEU VAL GLU ALA ILE LYS VAL ALA GLY SEQRES 19 A 462 TYR THR PRO ALA THR SER GLY LYS ASN ALA ILE ALA ILE SEQRES 20 A 462 ALA LEU ASP ALA ALA CYS SER GLU LEU TYR ASP GLU ASN SEQRES 21 A 462 SER LYS LYS TYR THR PHE LYS LYS LEU LYS GLN ALA ILE SEQRES 22 A 462 ALA GLU LYS ARG SER GLY PHE GLU HIS LEU ASP ASN VAL SEQRES 23 A 462 LYS LEU GLU TYR THR THR ASP GLU LEU ILE GLU TYR PHE SEQRES 24 A 462 GLY LYS LEU ILE ASP LYS TYR PRO ILE ILE SER ILE GLU SEQRES 25 A 462 ASP GLY LEU ALA GLU SER ASP TRP GLU GLY PHE ALA LYS SEQRES 26 A 462 MET THR ALA LYS PHE GLY SER LYS VAL GLN ILE VAL GLY SEQRES 27 A 462 ASP ASP LEU THR VAL THR ASN PRO LYS LEU LEU GLU LYS SEQRES 28 A 462 ALA ILE GLU GLN LYS SER MET ASN ALA ILE LEU ILE LYS SEQRES 29 A 462 LEU ASN GLN ILE GLY SER LEU SER GLU THR MET ASP ALA SEQRES 30 A 462 ILE ASN LYS ALA GLN LYS ALA ASN MET ALA CYS VAL VAL SEQRES 31 A 462 SER HIS ARG SER GLY GLU THR GLU ASP THR THR ILE ALA SEQRES 32 A 462 ASP LEU ALA VAL ALA PHE ASN THR GLY GLN ILE LYS THR SEQRES 33 A 462 GLY SER MET SER ARG THR ASP ARG ILE ALA LYS TYR ASN SEQRES 34 A 462 ARG LEU LEU VAL ILE GLU GLU GLU LEU GLY GLU GLN SER SEQRES 35 A 462 GLU PHE GLU GLY SER LYS ALA PHE TYR ASN ILE LYS LEU SEQRES 36 A 462 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 462 MET PRO ILE ILE GLU ARG ILE GLN ALA ARG GLU ILE LEU SEQRES 2 B 462 ASP SER ARG GLY ASN PRO THR VAL GLN VAL GLU VAL THR SEQRES 3 B 462 THR ASP TYR GLU ILE THR GLY VAL ALA ASN VAL PRO SER SEQRES 4 B 462 GLY ALA SER THR GLY SER ARG GLU ALA LEU GLU LEU ARG SEQRES 5 B 462 ASP LYS GLY THR LYS TYR GLU GLY ASN TRP PHE GLY GLY SEQRES 6 B 462 LYS GLY VAL MET THR ALA VAL ASP ASN VAL ASN GLU LYS SEQRES 7 B 462 ILE ALA PRO GLU LEU ILE GLY MET SER VAL PHE ASP GLN SEQRES 8 B 462 ARG ALA ILE ASP LYS LEU MET ILE GLU LEU ASP GLY THR SEQRES 9 B 462 ALA THR LYS SER LYS LEU GLY ALA ASN ALA ILE LEU GLY SEQRES 10 B 462 VAL SER LEU ALA VAL ALA ARG ALA ALA ALA THR GLU LEU SEQRES 11 B 462 GLY MET PRO LEU TYR ARG TYR ILE GLY GLY ALA ASN ALA SEQRES 12 B 462 HIS THR LEU PRO LEU PRO MET LEU ASN VAL LEU ASN GLY SEQRES 13 B 462 GLY GLU HIS ALA SER ASN THR VAL ASP PHE GLN GLU PHE SEQRES 14 B 462 MET ILE MET PRO VAL GLY ALA LYS SER LEU ARG GLU ALA SEQRES 15 B 462 LEU GLN MET ALA ASN LYS VAL PHE HIS ASN LEU ALA LYS SEQRES 16 B 462 LEU LEU LYS LYS ALA GLY TYR GLY THR GLN VAL GLY ASP SEQRES 17 B 462 GLU GLY GLY PHE ALA PRO ASN CYS LYS SER HIS GLU GLU SEQRES 18 B 462 VAL LEU ASP TYR LEU VAL GLU ALA ILE LYS VAL ALA GLY SEQRES 19 B 462 TYR THR PRO ALA THR SER GLY LYS ASN ALA ILE ALA ILE SEQRES 20 B 462 ALA LEU ASP ALA ALA CYS SER GLU LEU TYR ASP GLU ASN SEQRES 21 B 462 SER LYS LYS TYR THR PHE LYS LYS LEU LYS GLN ALA ILE SEQRES 22 B 462 ALA GLU LYS ARG SER GLY PHE GLU HIS LEU ASP ASN VAL SEQRES 23 B 462 LYS LEU GLU TYR THR THR ASP GLU LEU ILE GLU TYR PHE SEQRES 24 B 462 GLY LYS LEU ILE ASP LYS TYR PRO ILE ILE SER ILE GLU SEQRES 25 B 462 ASP GLY LEU ALA GLU SER ASP TRP GLU GLY PHE ALA LYS SEQRES 26 B 462 MET THR ALA LYS PHE GLY SER LYS VAL GLN ILE VAL GLY SEQRES 27 B 462 ASP ASP LEU THR VAL THR ASN PRO LYS LEU LEU GLU LYS SEQRES 28 B 462 ALA ILE GLU GLN LYS SER MET ASN ALA ILE LEU ILE LYS SEQRES 29 B 462 LEU ASN GLN ILE GLY SER LEU SER GLU THR MET ASP ALA SEQRES 30 B 462 ILE ASN LYS ALA GLN LYS ALA ASN MET ALA CYS VAL VAL SEQRES 31 B 462 SER HIS ARG SER GLY GLU THR GLU ASP THR THR ILE ALA SEQRES 32 B 462 ASP LEU ALA VAL ALA PHE ASN THR GLY GLN ILE LYS THR SEQRES 33 B 462 GLY SER MET SER ARG THR ASP ARG ILE ALA LYS TYR ASN SEQRES 34 B 462 ARG LEU LEU VAL ILE GLU GLU GLU LEU GLY GLU GLN SER SEQRES 35 B 462 GLU PHE GLU GLY SER LYS ALA PHE TYR ASN ILE LYS LEU SEQRES 36 B 462 GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *391(H2 O) HELIX 1 AA1 TYR A 58 LYS A 66 5 9 HELIX 2 AA2 VAL A 68 LYS A 78 1 11 HELIX 3 AA3 LYS A 78 ILE A 84 1 7 HELIX 4 AA4 ASP A 90 GLY A 103 1 14 HELIX 5 AA5 GLY A 111 GLY A 131 1 21 HELIX 6 AA6 PRO A 133 GLY A 140 1 8 HELIX 7 AA7 SER A 178 ALA A 200 1 23 HELIX 8 AA8 SER A 218 ALA A 233 1 16 HELIX 9 AA9 ALA A 252 GLU A 255 5 4 HELIX 10 AB1 PHE A 266 GLU A 275 1 10 HELIX 11 AB2 THR A 291 TYR A 306 1 16 HELIX 12 AB3 ASP A 319 GLY A 331 1 13 HELIX 13 AB4 ASN A 345 LYS A 356 1 12 HELIX 14 AB5 LYS A 364 GLY A 369 1 6 HELIX 15 AB6 SER A 370 ALA A 384 1 15 HELIX 16 AB7 THR A 400 PHE A 409 1 10 HELIX 17 AB8 ARG A 421 GLY A 439 1 19 HELIX 18 AB9 GLU A 440 SER A 442 5 3 HELIX 19 AC1 GLY A 446 PHE A 450 5 5 HELIX 20 AC2 TYR B 58 LYS B 66 5 9 HELIX 21 AC3 VAL B 68 LYS B 78 1 11 HELIX 22 AC4 LYS B 78 ILE B 84 1 7 HELIX 23 AC5 ASP B 90 GLY B 103 1 14 HELIX 24 AC6 GLY B 111 GLY B 131 1 21 HELIX 25 AC7 PRO B 133 GLY B 140 1 8 HELIX 26 AC8 SER B 178 ALA B 200 1 23 HELIX 27 AC9 SER B 218 ALA B 233 1 16 HELIX 28 AD1 ALA B 252 GLU B 255 5 4 HELIX 29 AD2 PHE B 266 GLU B 275 1 10 HELIX 30 AD3 THR B 291 TYR B 306 1 16 HELIX 31 AD4 ASP B 319 GLY B 331 1 13 HELIX 32 AD5 ASN B 345 LYS B 356 1 12 HELIX 33 AD6 LYS B 364 GLY B 369 1 6 HELIX 34 AD7 SER B 370 ALA B 384 1 15 HELIX 35 AD8 THR B 400 PHE B 409 1 10 HELIX 36 AD9 ARG B 421 GLY B 439 1 19 HELIX 37 AE1 GLU B 440 SER B 442 5 3 HELIX 38 AE2 GLY B 446 PHE B 450 5 5 SHEET 1 AA1 3 ILE A 4 LEU A 13 0 SHEET 2 AA1 3 PRO A 19 THR A 27 -1 O GLU A 24 N GLN A 8 SHEET 3 AA1 3 THR A 32 ASN A 36 -1 O GLY A 33 N VAL A 25 SHEET 1 AA2 2 THR A 145 LEU A 146 0 SHEET 2 AA2 2 GLU A 443 PHE A 444 1 O GLU A 443 N LEU A 146 SHEET 1 AA310 THR A 236 PRO A 237 0 SHEET 2 AA310 ALA A 244 ASP A 250 1 O ILE A 245 N THR A 236 SHEET 3 AA310 ILE A 308 GLU A 312 1 O GLU A 312 N LEU A 249 SHEET 4 AA310 GLN A 335 GLY A 338 1 O GLN A 335 N ILE A 309 SHEET 5 AA310 ALA A 360 ILE A 363 1 O LEU A 362 N GLY A 338 SHEET 6 AA310 ALA A 387 SER A 391 1 O SER A 391 N ILE A 363 SHEET 7 AA310 GLN A 413 LYS A 415 1 O LYS A 415 N VAL A 390 SHEET 8 AA310 LEU A 148 ASN A 155 1 N MET A 150 O ILE A 414 SHEET 9 AA310 GLU A 168 MET A 172 -1 O ILE A 171 N LEU A 151 SHEET 10 AA310 ALA A 244 ASP A 250 -1 O ALA A 248 N MET A 170 SHEET 1 AA4 3 TYR A 257 ASP A 258 0 SHEET 2 AA4 3 LYS A 263 THR A 265 -1 O LYS A 263 N ASP A 258 SHEET 3 AA4 3 GLU A 289 TYR A 290 -1 O TYR A 290 N TYR A 264 SHEET 1 AA5 3 ILE B 4 LEU B 13 0 SHEET 2 AA5 3 PRO B 19 THR B 27 -1 O THR B 26 N ARG B 6 SHEET 3 AA5 3 THR B 32 ASN B 36 -1 O GLY B 33 N VAL B 25 SHEET 1 AA6 2 THR B 145 LEU B 146 0 SHEET 2 AA6 2 GLU B 443 PHE B 444 1 O GLU B 443 N LEU B 146 SHEET 1 AA7 9 LEU B 148 PRO B 149 0 SHEET 2 AA7 9 GLN B 413 LYS B 415 1 O ILE B 414 N LEU B 148 SHEET 3 AA7 9 ALA B 387 SER B 391 1 N VAL B 390 O LYS B 415 SHEET 4 AA7 9 ALA B 360 ILE B 363 1 N ILE B 363 O SER B 391 SHEET 5 AA7 9 GLN B 335 GLY B 338 1 N GLY B 338 O LEU B 362 SHEET 6 AA7 9 ILE B 308 GLU B 312 1 N ILE B 309 O GLN B 335 SHEET 7 AA7 9 ALA B 244 ASP B 250 1 N LEU B 249 O GLU B 312 SHEET 8 AA7 9 GLU B 168 MET B 172 -1 N MET B 170 O ALA B 248 SHEET 9 AA7 9 LEU B 151 ASN B 155 -1 N LEU B 151 O ILE B 171 SHEET 1 AA8 8 LEU B 148 PRO B 149 0 SHEET 2 AA8 8 GLN B 413 LYS B 415 1 O ILE B 414 N LEU B 148 SHEET 3 AA8 8 ALA B 387 SER B 391 1 N VAL B 390 O LYS B 415 SHEET 4 AA8 8 ALA B 360 ILE B 363 1 N ILE B 363 O SER B 391 SHEET 5 AA8 8 GLN B 335 GLY B 338 1 N GLY B 338 O LEU B 362 SHEET 6 AA8 8 ILE B 308 GLU B 312 1 N ILE B 309 O GLN B 335 SHEET 7 AA8 8 ALA B 244 ASP B 250 1 N LEU B 249 O GLU B 312 SHEET 8 AA8 8 THR B 236 PRO B 237 1 N THR B 236 O ILE B 245 SHEET 1 AA9 3 TYR B 257 ASP B 258 0 SHEET 2 AA9 3 LYS B 263 THR B 265 -1 O LYS B 263 N ASP B 258 SHEET 3 AA9 3 GLU B 289 TYR B 290 -1 O TYR B 290 N TYR B 264 CRYST1 142.221 142.221 107.422 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007031 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009309 0.00000