HEADER PLANT PROTEIN 07-FEB-21 7E2V TITLE CRYSTAL STRUCTURE OF MADA-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MADA-3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MORUS ALBA; SOURCE 3 ORGANISM_TAXID: 3498; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ENZYME DIELS-ALDERASE CYCLOADDITION STEREOSELECTIVITY, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.GAO,X.DU,J.FAN,X.LEI REVDAT 3 29-NOV-23 7E2V 1 REMARK REVDAT 2 22-DEC-21 7E2V 1 JRNL REVDAT 1 01-DEC-21 7E2V 0 JRNL AUTH L.GAO,Y.ZOU,X.LIU,J.YANG,X.DU,J.WANG,X.YU,J.FAN,M.JIANG, JRNL AUTH 2 Y.LI,K.N.HOUK,X.LEI JRNL TITL ENZYMATIC CONTROL OF ENDO- AND EXO-STEREOSELECTIVE JRNL TITL 2 DIELS-ALDER REACTIONS WITH BROAD SUBSTRATE SCOPE. JRNL REF NAT CATAL 2021 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-021-00717-8 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5900 - 6.1100 0.99 2824 149 0.2402 0.2528 REMARK 3 2 6.1100 - 4.8500 0.99 2760 147 0.2401 0.2709 REMARK 3 3 4.8500 - 4.2400 1.00 2774 145 0.2223 0.2695 REMARK 3 4 4.2400 - 3.8500 0.99 2720 143 0.2786 0.3145 REMARK 3 5 3.8500 - 3.5800 0.99 2732 144 0.3006 0.3690 REMARK 3 6 3.5800 - 3.3700 0.99 2723 144 0.3140 0.3855 REMARK 3 7 3.3700 - 3.2000 1.00 2746 145 0.2987 0.3371 REMARK 3 8 3.2000 - 3.0600 1.00 2729 143 0.3015 0.3491 REMARK 3 9 3.0600 - 2.9400 0.97 2633 139 0.2995 0.3664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.052 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8077 REMARK 3 ANGLE : 0.926 10968 REMARK 3 CHIRALITY : 0.057 1220 REMARK 3 PLANARITY : 0.006 1362 REMARK 3 DIHEDRAL : 21.000 1085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 32 through 39 or REMARK 3 (resid 40 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 41 or REMARK 3 resid 51 through 81 or (resid 82 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 83 through 144 or REMARK 3 (resid 145 through 146 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 147 through 216 or (resid 217 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 218 through 283 REMARK 3 or (resid 284 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 285 through 299 or (resid 300 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 301 or resid 309 through 358 REMARK 3 or resid 366 through 374 or (resid 378 REMARK 3 through 379 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 380 through 450 or resid 456 through 495 REMARK 3 or resid 506 through 507 or (resid 508 REMARK 3 through 510 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 511 through 547 or (resid 548 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 549)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 32 through 51 or REMARK 3 (resid 52 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 53 REMARK 3 through 372 or (resid 373 through 379 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 380 through 476 or REMARK 3 (resid 477 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 478 REMARK 3 through 545)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 43.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JQH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 0.1 M BICINE, PH 8.5, REMARK 280 30% PEG 1500, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.58350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 TYR A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 PRO A 11 REMARK 465 LYS A 12 REMARK 465 ILE A 13 REMARK 465 THR A 14 REMARK 465 ILE A 15 REMARK 465 PHE A 16 REMARK 465 LEU A 17 REMARK 465 PHE A 18 REMARK 465 SER A 19 REMARK 465 PHE A 20 REMARK 465 VAL A 21 REMARK 465 LEU A 22 REMARK 465 VAL A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 ALA A 26 REMARK 465 ASN A 27 REMARK 465 HIS A 28 REMARK 465 ALA A 29 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 SER A 46 REMARK 465 THR A 47 REMARK 465 SER A 48 REMARK 465 THR A 49 REMARK 465 PRO A 50 REMARK 465 LEU A 359 REMARK 465 THR A 360 REMARK 465 ASN A 361 REMARK 465 SER A 362 REMARK 465 LYS A 363 REMARK 465 GLU A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 ILE A 500 REMARK 465 ASN A 501 REMARK 465 GLY A 502 REMARK 465 ALA A 503 REMARK 465 TYR A 504 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 TYR B 3 REMARK 465 PHE B 4 REMARK 465 SER B 5 REMARK 465 PHE B 6 REMARK 465 SER B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 PHE B 10 REMARK 465 PRO B 11 REMARK 465 LYS B 12 REMARK 465 ILE B 13 REMARK 465 THR B 14 REMARK 465 ILE B 15 REMARK 465 PHE B 16 REMARK 465 LEU B 17 REMARK 465 PHE B 18 REMARK 465 SER B 19 REMARK 465 PHE B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 VAL B 23 REMARK 465 ALA B 24 REMARK 465 SER B 25 REMARK 465 ALA B 26 REMARK 465 ASN B 27 REMARK 465 HIS B 28 REMARK 465 ALA B 29 REMARK 465 HIS B 30 REMARK 465 GLU B 31 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 SER B 44 REMARK 465 ASN B 45 REMARK 465 SER B 46 REMARK 465 THR B 47 REMARK 465 SER B 48 REMARK 465 THR B 49 REMARK 465 PRO B 50 REMARK 465 ASP B 302 REMARK 465 GLU B 303 REMARK 465 LYS B 304 REMARK 465 GLY B 305 REMARK 465 SER B 306 REMARK 465 LYS B 307 REMARK 465 LYS B 308 REMARK 465 LEU B 358 REMARK 465 LEU B 359 REMARK 465 THR B 360 REMARK 465 ASN B 361 REMARK 465 SER B 362 REMARK 465 LYS B 363 REMARK 465 SER B 364 REMARK 465 PHE B 375 REMARK 465 GLU B 376 REMARK 465 TRP B 377 REMARK 465 GLY B 451 REMARK 465 GLN B 452 REMARK 465 ASN B 453 REMARK 465 ALA B 454 REMARK 465 THR B 455 REMARK 465 ASN B 495A REMARK 465 GLU B 495B REMARK 465 ASN B 495C REMARK 465 GLU B 495D REMARK 465 ILE B 495E REMARK 465 ASN B 495F REMARK 465 GLY B 495G REMARK 465 ALA B 495H REMARK 465 TYR B 495I REMARK 465 ASN B 495J REMARK 465 HIS B 546 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 52 OG REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LEU A 373 CG CD1 CD2 REMARK 470 ASN A 374 CG OD1 ND2 REMARK 470 PHE A 375 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 TRP A 377 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 377 CZ3 CH2 REMARK 470 LYS A 477 CG CD CE NZ REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 82 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 217 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 470 ILE B 300 CG1 CG2 CD1 REMARK 470 ARG B 378 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 504 CG CD CE NZ REMARK 470 GLN B 505 CG CD OE1 NE2 REMARK 470 LEU B 544 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS B 116 C8M FAD B 601 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 146 O ASN A 536 2655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 85 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 46.63 -92.67 REMARK 500 PRO A 73 1.05 -65.51 REMARK 500 THR A 88 79.38 -111.96 REMARK 500 ASP A 286 127.77 -38.78 REMARK 500 PHE A 375 153.31 -44.70 REMARK 500 TYR A 418 58.39 -107.92 REMARK 500 ALA A 454 -10.55 72.40 REMARK 500 SER B 52 35.05 -97.44 REMARK 500 PRO B 73 2.34 -65.86 REMARK 500 SER B 138 24.38 -142.02 REMARK 500 ASP B 286 129.99 -38.24 REMARK 500 ASP B 366 49.96 -72.11 REMARK 500 TYR B 418 50.62 -119.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7E2V A 1 550 PDB 7E2V 7E2V 1 550 DBREF 7E2V B 1 546 PDB 7E2V 7E2V 1 546 SEQRES 1 A 550 MET LYS TYR PHE SER PHE SER LEU SER PHE PRO LYS ILE SEQRES 2 A 550 THR ILE PHE LEU PHE SER PHE VAL LEU VAL ALA SER ALA SEQRES 3 A 550 ASN HIS ALA HIS GLU SER PHE LEU GLU CYS LEU THR THR SEQRES 4 A 550 ARG ILE SER LYS SER ASN SER THR SER THR PRO GLU SER SEQRES 5 A 550 ILE ILE TYR THR LYS ASP ASN PRO SER TYR SER THR ILE SEQRES 6 A 550 LEU ASN SER THR SER LEU ASN PRO ARG PHE PHE PRO SER SEQRES 7 A 550 SER ALA ARG TYR PRO LEU LEU ILE VAL THR PRO LEU HIS SEQRES 8 A 550 ALA SER HIS VAL GLN ALA THR VAL HIS CYS ALA LYS LYS SEQRES 9 A 550 HIS GLY ILE GLN ILE ARG ILE ARG SER GLY GLY HIS ASP SEQRES 10 A 550 TYR GLU GLY LEU SER TYR MET SER ASN VAL THR PHE ALA SEQRES 11 A 550 ILE VAL ASP LEU ARG ASN LEU SER SER ILE ASP VAL ASP SEQRES 12 A 550 VAL LYS ARG LYS SER ALA TRP VAL GLN SER GLY ALA THR SEQRES 13 A 550 LEU GLY GLU LEU HIS TYR TRP ILE ALA LYS LYS SER GLN SEQRES 14 A 550 ASN LEU ALA PHE PRO GLY VAL VAL GLY HIS THR VAL GLY SEQRES 15 A 550 ILE GLY GLY MET LEU GLY ALA GLY GLY TYR GLY TYR SER SEQRES 16 A 550 SER ARG LYS TYR GLY LEU SER ALA ASP ASN ILE LEU ASP SEQRES 17 A 550 ALA GLN LEU ILE ASP VAL ARG GLY ARG ILE LEU ASN ARG SEQRES 18 A 550 LYS SER MET GLY GLU ASP LEU PHE TRP ALA ILE ARG GLY SEQRES 19 A 550 GLY GLY ALA GLY SER PHE GLY ILE VAL LEU ALA TRP LYS SEQRES 20 A 550 VAL ARG LEU VAL ASP VAL PRO SER LYS VAL THR VAL PHE SEQRES 21 A 550 THR ALA ILE ARG ASP TRP ASP ASN ASN ALA THR LYS LYS SEQRES 22 A 550 PHE ILE HIS ARG TYR GLN ARG ARG ILE ALA LYS VAL ASP SEQRES 23 A 550 LYS ASP LEU THR ILE ILE VAL ARG PHE LEU THR ALA SER SEQRES 24 A 550 ILE THR ASP GLU LYS GLY SER LYS LYS ILE GLN ILE SER SEQRES 25 A 550 THR PHE ILE THR ALA THR TYR HIS GLY SER GLN ASP ARG SEQRES 26 A 550 LEU LEU SER LEU MET GLU LYS GLU PHE PRO GLU LEU GLY SEQRES 27 A 550 LEU LEU ALA LYS GLU CYS ALA GLU GLY ALA TRP VAL GLN SEQRES 28 A 550 SER ILE LEU TYR PHE ASN LEU LEU THR ASN SER LYS SER SEQRES 29 A 550 LEU ASP VAL LEU LEU ASN ARG THR LEU ASN PHE GLU TRP SEQRES 30 A 550 ARG ALA PHE LYS ILE LYS SER ASP TYR LEU LYS LYS PRO SEQRES 31 A 550 ILE PRO ASP GLN VAL LEU GLU ASN LEU LEU VAL LYS LEU SEQRES 32 A 550 TYR GLU GLU ASP ILE GLY GLU THR PHE VAL GLU PHE PHE SEQRES 33 A 550 PRO TYR GLY GLY LYS LEU ASP GLU ILE SER GLU SER GLU SEQRES 34 A 550 ILE PRO CYS PRO HIS ARG ALA GLY ASN LEU TYR ASN LEU SEQRES 35 A 550 ARG TYR MET VAL LEU TRP LYS GLU GLY GLN ASN ALA THR SEQRES 36 A 550 ALA VAL ASN LYS HIS LEU SER TRP ILE ARG ARG ALA TYR SEQRES 37 A 550 ASN TYR MET THR PRO TYR VAL SER LYS ASN PRO ARG GLY SEQRES 38 A 550 ALA PHE LEU ASN PHE ARG ASP LEU ASP ILE GLY THR ASN SEQRES 39 A 550 PRO ASN GLU ASN GLU ILE ASN GLY ALA TYR ASN TYR ILE SEQRES 40 A 550 LYS GLN ALA SER ASN TRP GLY THR LYS TYR PHE LYS ASN SEQRES 41 A 550 ASN PHE TYR LYS LEU ILE TYR VAL LYS THR ILE VAL ASP SEQRES 42 A 550 PRO THR ASN PHE PHE THR TYR GLU GLN SER ILE PRO SER SEQRES 43 A 550 LEU LEU PRO HIS SEQRES 1 B 550 MET LYS TYR PHE SER PHE SER LEU SER PHE PRO LYS ILE SEQRES 2 B 550 THR ILE PHE LEU PHE SER PHE VAL LEU VAL ALA SER ALA SEQRES 3 B 550 ASN HIS ALA HIS GLU SER PHE LEU GLU CYS LEU THR THR SEQRES 4 B 550 ARG ILE SER LYS SER ASN SER THR SER THR PRO GLU SER SEQRES 5 B 550 ILE ILE TYR THR LYS ASP ASN PRO SER TYR SER THR ILE SEQRES 6 B 550 LEU ASN SER THR SER LEU ASN PRO ARG PHE PHE PRO SER SEQRES 7 B 550 SER ALA ARG TYR PRO LEU LEU ILE VAL THR PRO LEU HIS SEQRES 8 B 550 ALA SER HIS VAL GLN ALA THR VAL HIS CYS ALA LYS LYS SEQRES 9 B 550 HIS GLY ILE GLN ILE ARG ILE ARG SER GLY GLY HIS ASP SEQRES 10 B 550 TYR GLU GLY LEU SER TYR MET SER ASN VAL THR PHE ALA SEQRES 11 B 550 ILE VAL ASP LEU ARG ASN LEU SER SER ILE ASP VAL ASP SEQRES 12 B 550 VAL LYS ARG LYS SER ALA TRP VAL GLN SER GLY ALA THR SEQRES 13 B 550 LEU GLY GLU LEU HIS TYR TRP ILE ALA LYS LYS SER GLN SEQRES 14 B 550 ASN LEU ALA PHE PRO GLY VAL VAL GLY HIS THR VAL GLY SEQRES 15 B 550 ILE GLY GLY MET LEU GLY ALA GLY GLY TYR GLY TYR SER SEQRES 16 B 550 SER ARG LYS TYR GLY LEU SER ALA ASP ASN ILE LEU ASP SEQRES 17 B 550 ALA GLN LEU ILE ASP VAL ARG GLY ARG ILE LEU ASN ARG SEQRES 18 B 550 LYS SER MET GLY GLU ASP LEU PHE TRP ALA ILE ARG GLY SEQRES 19 B 550 GLY GLY ALA GLY SER PHE GLY ILE VAL LEU ALA TRP LYS SEQRES 20 B 550 VAL ARG LEU VAL ASP VAL PRO SER LYS VAL THR VAL PHE SEQRES 21 B 550 THR ALA ILE ARG ASP TRP ASP ASN ASN ALA THR LYS LYS SEQRES 22 B 550 PHE ILE HIS ARG TYR GLN ARG ARG ILE ALA LYS VAL ASP SEQRES 23 B 550 LYS ASP LEU THR ILE ILE VAL ARG PHE LEU THR ALA SER SEQRES 24 B 550 ILE THR ASP GLU LYS GLY SER LYS LYS ILE GLN ILE SER SEQRES 25 B 550 THR PHE ILE THR ALA THR TYR HIS GLY SER GLN ASP ARG SEQRES 26 B 550 LEU LEU SER LEU MET GLU LYS GLU PHE PRO GLU LEU GLY SEQRES 27 B 550 LEU LEU ALA LYS GLU CYS ALA GLU GLY ALA TRP VAL GLN SEQRES 28 B 550 SER ILE LEU TYR PHE ASN LEU LEU THR ASN SER LYS SER SEQRES 29 B 550 LEU ASP VAL LEU LEU ASN ARG THR LEU ASN PHE GLU TRP SEQRES 30 B 550 ARG ALA PHE LYS ILE LYS SER ASP TYR LEU LYS LYS PRO SEQRES 31 B 550 ILE PRO ASP GLN VAL LEU GLU ASN LEU LEU VAL LYS LEU SEQRES 32 B 550 TYR GLU GLU ASP ILE GLY GLU THR PHE VAL GLU PHE PHE SEQRES 33 B 550 PRO TYR GLY GLY LYS LEU ASP GLU ILE SER GLU SER GLU SEQRES 34 B 550 ILE PRO CYS PRO HIS ARG ALA GLY ASN LEU TYR ASN LEU SEQRES 35 B 550 ARG TYR MET VAL LEU TRP LYS GLU GLY GLN ASN ALA THR SEQRES 36 B 550 ALA VAL ASN LYS HIS LEU SER TRP ILE ARG ARG ALA TYR SEQRES 37 B 550 ASN TYR MET THR PRO TYR VAL SER LYS ASN PRO ARG GLY SEQRES 38 B 550 ALA PHE LEU ASN PHE ARG ASP LEU ASP ILE GLY THR ASN SEQRES 39 B 550 PRO ASN GLU ASN GLU ILE ASN GLY ALA TYR ASN TYR ILE SEQRES 40 B 550 LYS GLN ALA SER ASN TRP GLY THR LYS TYR PHE LYS ASN SEQRES 41 B 550 ASN PHE TYR LYS LEU ILE TYR VAL LYS THR ILE VAL ASP SEQRES 42 B 550 PRO THR ASN PHE PHE THR TYR GLU GLN SER ILE PRO SER SEQRES 43 B 550 LEU LEU PRO HIS HET FAD A 601 53 HET NAG A 602 14 HET NAG A 603 14 HET FAD B 601 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NAG 2(C8 H15 N O6) HELIX 1 AA1 HIS A 30 ILE A 41 1 12 HELIX 2 AA2 SER A 61 THR A 69 1 9 HELIX 3 AA3 ASN A 72 PHE A 76 5 5 HELIX 4 AA4 HIS A 91 GLY A 106 1 16 HELIX 5 AA5 GLY A 120 MET A 124 5 5 HELIX 6 AA6 THR A 156 LYS A 166 1 11 HELIX 7 AA7 GLY A 182 ALA A 189 1 8 HELIX 8 AA8 SER A 195 GLY A 200 1 6 HELIX 9 AA9 LEU A 201 ASP A 204 5 4 HELIX 10 AB1 ASN A 220 GLY A 225 1 6 HELIX 11 AB2 GLY A 225 ARG A 233 1 9 HELIX 12 AB3 GLY A 236 PHE A 240 5 5 HELIX 13 AB4 ASN A 269 LYS A 272 5 4 HELIX 14 AB5 LYS A 273 ILE A 282 1 10 HELIX 15 AB6 SER A 322 PHE A 334 1 13 HELIX 16 AB7 LEU A 340 LYS A 342 5 3 HELIX 17 AB8 ALA A 348 PHE A 356 1 9 HELIX 18 AB9 VAL A 367 ARG A 371 5 5 HELIX 19 AC1 PRO A 392 LYS A 402 1 11 HELIX 20 AC2 LEU A 403 GLU A 406 5 4 HELIX 21 AC3 GLY A 420 ILE A 425 1 6 HELIX 22 AC4 ALA A 454 THR A 472 1 19 HELIX 23 AC5 PRO A 473 VAL A 475 5 3 HELIX 24 AC6 ASP A 488 GLY A 492 5 5 HELIX 25 AC7 TYR A 506 PHE A 518 1 13 HELIX 26 AC8 ASN A 520 ASP A 533 1 14 HELIX 27 AC9 PHE B 33 ILE B 41 1 9 HELIX 28 AD1 SER B 61 THR B 69 1 9 HELIX 29 AD2 HIS B 91 HIS B 105 1 15 HELIX 30 AD3 GLY B 120 MET B 124 5 5 HELIX 31 AD4 THR B 156 LYS B 166 1 11 HELIX 32 AD5 GLY B 182 GLY B 190 1 9 HELIX 33 AD6 SER B 195 GLY B 200 1 6 HELIX 34 AD7 LEU B 201 ASP B 204 5 4 HELIX 35 AD8 ARG B 221 GLY B 225 1 5 HELIX 36 AD9 GLY B 225 ARG B 233 1 9 HELIX 37 AE1 GLY B 236 PHE B 240 5 5 HELIX 38 AE2 ASN B 269 LYS B 272 5 4 HELIX 39 AE3 LYS B 273 ILE B 282 1 10 HELIX 40 AE4 ALA B 283 VAL B 285 5 3 HELIX 41 AE5 SER B 322 PHE B 334 1 13 HELIX 42 AE6 LEU B 340 LYS B 342 5 3 HELIX 43 AE7 ALA B 348 PHE B 356 1 9 HELIX 44 AE8 VAL B 367 ARG B 371 5 5 HELIX 45 AE9 PRO B 392 VAL B 401 1 10 HELIX 46 AF1 LYS B 402 GLU B 406 5 5 HELIX 47 AF2 GLY B 420 ILE B 425 1 6 HELIX 48 AF3 VAL B 457 THR B 472 1 16 HELIX 49 AF4 PRO B 473 VAL B 475 5 3 HELIX 50 AF5 ASP B 488 GLY B 492 5 5 HELIX 51 AF6 ILE B 503 PHE B 514 1 12 HELIX 52 AF7 ASN B 516 ASP B 529 1 14 SHEET 1 AA1 4 ILE A 54 THR A 56 0 SHEET 2 AA1 4 LEU A 85 VAL A 87 -1 O ILE A 86 N TYR A 55 SHEET 3 AA1 4 PHE A 129 ASP A 133 1 O ILE A 131 N VAL A 87 SHEET 4 AA1 4 GLN A 108 ARG A 112 1 N GLN A 108 O ALA A 130 SHEET 1 AA2 5 ILE A 140 ASP A 143 0 SHEET 2 AA2 5 SER A 148 GLN A 152 -1 O TRP A 150 N ASP A 141 SHEET 3 AA2 5 ILE A 242 ARG A 249 -1 O TRP A 246 N VAL A 151 SHEET 4 AA2 5 ILE A 206 ILE A 212 -1 N LEU A 207 O LYS A 247 SHEET 5 AA2 5 ILE A 218 LEU A 219 -1 O LEU A 219 N LEU A 211 SHEET 1 AA3 2 LEU A 171 ALA A 172 0 SHEET 2 AA3 2 VAL A 251 ASP A 252 -1 O VAL A 251 N ALA A 172 SHEET 1 AA4 7 CYS A 344 GLY A 347 0 SHEET 2 AA4 7 VAL A 257 ASP A 265 -1 N VAL A 257 O GLY A 347 SHEET 3 AA4 7 LYS A 307 TYR A 319 -1 O ILE A 315 N ALA A 262 SHEET 4 AA4 7 LEU A 289 THR A 301 -1 N ILE A 300 O LYS A 308 SHEET 5 AA4 7 THR A 411 PRO A 417 -1 O PHE A 415 N VAL A 293 SHEET 6 AA4 7 TYR A 440 TRP A 448 -1 O MET A 445 N PHE A 412 SHEET 7 AA4 7 ALA A 379 LEU A 387 -1 N LEU A 387 O TYR A 440 SHEET 1 AA5 4 ILE B 54 THR B 56 0 SHEET 2 AA5 4 LEU B 85 VAL B 87 -1 O ILE B 86 N TYR B 55 SHEET 3 AA5 4 PHE B 129 ASP B 133 1 O ILE B 131 N VAL B 87 SHEET 4 AA5 4 GLN B 108 ARG B 112 1 N ARG B 112 O VAL B 132 SHEET 1 AA6 5 ILE B 140 ASP B 143 0 SHEET 2 AA6 5 SER B 148 GLN B 152 -1 O TRP B 150 N ASP B 141 SHEET 3 AA6 5 ILE B 242 ARG B 249 -1 O VAL B 248 N ALA B 149 SHEET 4 AA6 5 ILE B 206 ILE B 212 -1 N GLN B 210 O ALA B 245 SHEET 5 AA6 5 ILE B 218 ASN B 220 -1 O LEU B 219 N LEU B 211 SHEET 1 AA7 2 LEU B 171 ALA B 172 0 SHEET 2 AA7 2 VAL B 251 ASP B 252 -1 O VAL B 251 N ALA B 172 SHEET 1 AA8 7 CYS B 344 GLY B 347 0 SHEET 2 AA8 7 VAL B 257 ASP B 265 -1 N VAL B 257 O GLY B 347 SHEET 3 AA8 7 GLN B 310 TYR B 319 -1 O ILE B 315 N ALA B 262 SHEET 4 AA8 7 LEU B 289 ALA B 298 -1 N ILE B 292 O THR B 316 SHEET 5 AA8 7 THR B 411 PRO B 417 -1 O PHE B 415 N VAL B 293 SHEET 6 AA8 7 TYR B 440 TRP B 448 -1 O ASN B 441 N PHE B 416 SHEET 7 AA8 7 ALA B 379 LEU B 387 -1 N ASP B 385 O LEU B 442 SSBOND 1 CYS A 36 CYS A 101 1555 1555 2.03 SSBOND 2 CYS B 36 CYS B 101 1555 1555 2.03 LINK ND2 ASN A 67 C1 NAG A 602 1555 1555 1.43 LINK ND1 HIS A 116 C8M FAD A 601 1555 1555 1.44 LINK ND2 ASN A 126 C1 NAG A 603 1555 1555 1.45 LINK ND1 HIS B 116 C8M FAD B 601 1555 1555 1.43 CISPEP 1 ASN A 478 PRO A 479 0 1.97 CISPEP 2 ASN B 478 PRO B 479 0 -0.40 CRYST1 83.028 79.167 95.011 90.00 98.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012044 0.000000 0.001742 0.00000 SCALE2 0.000000 0.012632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010635 0.00000 MTRIX1 1 0.445439 -0.838450 -0.313983 24.74582 1 MTRIX2 1 -0.859304 -0.498829 0.112987 52.90903 1 MTRIX3 1 -0.251358 0.219478 -0.942682 -33.62752 1