HEADER BIOSYNTHETIC PROTEIN 08-FEB-21 7E38
TITLE CRYSTAL STRUCTURE OF DEOXYPODOPHYLLOTOXIN SYNTHASE FROM
TITLE 2 SINOPODOPHYLLUM HEXANDRUM IN COMPLEX WITH YATEIN AND SUCCINATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DEOXYPODOPHYLLOTOXIN SYNTHASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: 2-OXOGLUTARATE DEPENDENT DIOXYGENASE;
COMPND 5 EC: 1.14.20.8;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SINOPODOPHYLLUM HEXANDRUM;
SOURCE 3 ORGANISM_COMMON: HIMALAYAN MAY APPLE;
SOURCE 4 ORGANISM_TAXID: 93608;
SOURCE 5 GENE: 2-ODD, PHEX30848;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR(DE3)PLYSS
KEYWDS NON-HEME IRON/2-OXOGLUTARATE ENZYME BETA-HELIX FOLD
KEYWDS 2 DEOXYPODOPHYLLOTOXIN BIOSYNTHESIS CARBON-CARBON BOND FORMATION,
KEYWDS 3 BIOSYNTHETIC PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR M.-H.WU,W.-C.CHANG,T.-C.CHIEN,N.-L.CHAN
REVDAT 5 11-DEC-24 7E38 1 REMARK
REVDAT 4 27-NOV-24 7E38 1 REMARK
REVDAT 3 29-NOV-23 7E38 1 REMARK
REVDAT 2 12-JAN-22 7E38 1 JRNL
REVDAT 1 15-DEC-21 7E38 0
JRNL AUTH H.TANG,M.H.WU,H.Y.LIN,M.R.HAN,Y.H.TU,Z.J.YANG,T.C.CHIEN,
JRNL AUTH 2 N.L.CHAN,W.C.CHANG
JRNL TITL MECHANISTIC ANALYSIS OF CARBON-CARBON BOND FORMATION BY
JRNL TITL 2 DEOXYPODOPHYLLOTOXIN SYNTHASE.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022
JRNL REFN ESSN 1091-6490
JRNL PMID 34969844
JRNL DOI 10.1073/PNAS.2113770119
REMARK 2
REMARK 2 RESOLUTION. 2.05 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.19RC4_4035
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 3 NUMBER OF REFLECTIONS : 62596
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.181
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.217
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.190
REMARK 3 FREE R VALUE TEST SET COUNT : 1994
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 19.8900 - 4.9100 0.95 4448 145 0.1713 0.1942
REMARK 3 2 4.9100 - 3.9100 0.97 4403 144 0.1397 0.1658
REMARK 3 3 3.9100 - 3.4200 0.97 4380 148 0.1577 0.1988
REMARK 3 4 3.4200 - 3.1100 0.98 4370 148 0.1847 0.2340
REMARK 3 5 3.1100 - 2.8900 0.98 4325 145 0.1948 0.2288
REMARK 3 6 2.8900 - 2.7200 0.98 4340 147 0.2026 0.2405
REMARK 3 7 2.7200 - 2.5800 0.98 4298 139 0.2021 0.2535
REMARK 3 8 2.5800 - 2.4700 0.98 4338 139 0.1945 0.2483
REMARK 3 9 2.4700 - 2.3700 0.98 4341 139 0.2014 0.2262
REMARK 3 10 2.3700 - 2.2900 0.97 4274 140 0.1960 0.2778
REMARK 3 11 2.2900 - 2.2200 0.97 4302 138 0.1946 0.2051
REMARK 3 12 2.2200 - 2.1600 0.97 4267 137 0.1907 0.2305
REMARK 3 13 2.1600 - 2.1000 0.97 4248 145 0.2018 0.2322
REMARK 3 14 2.1000 - 2.0500 0.97 4268 140 0.2120 0.2596
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.199
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.739
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 22.23
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.53
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.002 5237
REMARK 3 ANGLE : 0.558 7101
REMARK 3 CHIRALITY : 0.041 761
REMARK 3 PLANARITY : 0.003 911
REMARK 3 DIHEDRAL : 7.837 697
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7E38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-21.
REMARK 100 THE DEPOSITION ID IS D_1300020704.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-MAY-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSRRC
REMARK 200 BEAMLINE : BL15A1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62652
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 200 DATA REDUNDANCY : 6.900
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.09800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.47700
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 7E37
REMARK 200
REMARK 200 REMARK: ROD AND PLATE LIKE CRYSTALS
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 65.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.4 M SODIUM
REMARK 280 CITRATE TRIBASIC DIHYDRATE, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.53400
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.06800
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.06800
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.53400
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH B 628 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 GLY A 2
REMARK 465 SER A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 MET B 1
REMARK 465 GLY B 2
REMARK 465 SER B 3
REMARK 465 THR B 4
REMARK 465 ALA B 5
REMARK 465 LYS B 151
REMARK 465 HIS B 152
REMARK 465 PHE B 153
REMARK 465 ASP B 154
REMARK 465 SER B 155
REMARK 465 PHE B 156
REMARK 465 CYS B 157
REMARK 465 GLU B 158
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 79 74.90 -116.30
REMARK 500 TYR A 82 -76.56 -129.53
REMARK 500 LEU A 91 -66.93 -133.59
REMARK 500 ASN A 118 76.39 -152.75
REMARK 500 ASP A 260 -61.04 -157.21
REMARK 500 ASP A 300 111.31 -160.63
REMARK 500 TYR B 82 -77.31 -128.91
REMARK 500 LEU B 91 -67.70 -124.48
REMARK 500 ALA B 180 -30.66 -130.45
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 FE A 401 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 184 NE2
REMARK 620 2 ASP A 186 OD1 94.0
REMARK 620 3 HIS A 239 NE2 89.6 88.4
REMARK 620 4 SIN A 402 O4 90.9 155.2 115.9
REMARK 620 5 HOH A 573 O 167.6 97.0 96.4 76.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 FE B 401 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 184 NE2
REMARK 620 2 ASP B 186 OD1 89.2
REMARK 620 3 HIS B 239 NE2 87.6 86.2
REMARK 620 4 SIN B 402 O3 84.3 141.5 131.1
REMARK 620 5 HOH B 569 O 169.0 100.4 98.5 84.8
REMARK 620 N 1 2 3 4
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 7E37 RELATED DB: PDB
DBREF1 7E38 A 1 310 UNP 2ODD_SINHE
DBREF2 7E38 A A0A0N9HQ36 1 310
DBREF1 7E38 B 1 310 UNP 2ODD_SINHE
DBREF2 7E38 B A0A0N9HQ36 1 310
SEQADV 7E38 LEU A 311 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 GLU A 312 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS A 313 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS A 314 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS A 315 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS A 316 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS A 317 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS A 318 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 LEU B 311 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 GLU B 312 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS B 313 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS B 314 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS B 315 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS B 316 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS B 317 UNP A0A0N9HQ3 EXPRESSION TAG
SEQADV 7E38 HIS B 318 UNP A0A0N9HQ3 EXPRESSION TAG
SEQRES 1 A 318 MET GLY SER THR ALA PRO LEU ARG LEU PRO VAL ILE ASP
SEQRES 2 A 318 LEU SER MET LYS ASN LEU LYS PRO GLY THR THR SER TRP
SEQRES 3 A 318 ASN SER VAL ARG THR GLN VAL ARG GLU ALA LEU GLU GLU
SEQRES 4 A 318 TYR GLY CYS PHE GLU ALA VAL ILE ASP ALA VAL SER PRO
SEQRES 5 A 318 GLU LEU GLN LYS ALA VAL CYS ASN LYS GLY HIS GLU LEU
SEQRES 6 A 318 LEU ASN LEU PRO LEU GLU THR LYS MET LEU ASN GLY ASN
SEQRES 7 A 318 LYS PRO GLU TYR ASP GLY PHE THR SER ILE PRO ASN LEU
SEQRES 8 A 318 ASN GLU GLY MET GLY VAL GLY ARG ILE THR ASP LEU GLU
SEQRES 9 A 318 LYS VAL GLU ARG PHE THR ASN LEU MET TRP PRO GLU GLY
SEQRES 10 A 318 ASN LYS ASP PHE CYS GLU THR VAL TYR SER TYR GLY LYS
SEQRES 11 A 318 ARG MET ALA GLU VAL ASP HIS ILE LEU LYS MET MET VAL
SEQRES 12 A 318 PHE GLU SER PHE GLY MET GLU LYS HIS PHE ASP SER PHE
SEQRES 13 A 318 CYS GLU SER THR ASN TYR LEU LEU HIS PHE MET ARG TYR
SEQRES 14 A 318 GLN GLN PRO GLY LYS ASP GLY ARG SER PRO ALA LEU SER
SEQRES 15 A 318 LEU HIS LYS ASP LYS SER ILE LEU THR ILE VAL ASN GLN
SEQRES 16 A 318 ASN ASP VAL LYS GLY LEU GLU PHE GLU THR LYS ASP GLY
SEQRES 17 A 318 GLU TRP ILE LEU PRO THR ALA ASP ASN HIS ILE VAL LEU
SEQRES 18 A 318 LEU GLY ASP CYS PHE MET ALA TRP SER ASN GLY ARG LEU
SEQRES 19 A 318 HIS SER PRO LEU HIS ARG VAL THR LEU VAL ALA ASN GLN
SEQRES 20 A 318 ALA ARG LEU SER THR SER SER PHE SER PHE PRO LYS ASP
SEQRES 21 A 318 ILE ILE GLU THR PRO ALA GLU LEU VAL ASP GLU GLU HIS
SEQRES 22 A 318 PRO LEU LEU PHE ASN PRO PHE GLU ILE THR GLU LEU LEU
SEQRES 23 A 318 ALA TYR CYS PHE THR LYS GLU GLY ALA LYS ALA VAL CYS
SEQRES 24 A 318 ASP LEU LYS GLN TYR LYS ALA TYR THR GLY ALA LEU GLU
SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS
SEQRES 1 B 318 MET GLY SER THR ALA PRO LEU ARG LEU PRO VAL ILE ASP
SEQRES 2 B 318 LEU SER MET LYS ASN LEU LYS PRO GLY THR THR SER TRP
SEQRES 3 B 318 ASN SER VAL ARG THR GLN VAL ARG GLU ALA LEU GLU GLU
SEQRES 4 B 318 TYR GLY CYS PHE GLU ALA VAL ILE ASP ALA VAL SER PRO
SEQRES 5 B 318 GLU LEU GLN LYS ALA VAL CYS ASN LYS GLY HIS GLU LEU
SEQRES 6 B 318 LEU ASN LEU PRO LEU GLU THR LYS MET LEU ASN GLY ASN
SEQRES 7 B 318 LYS PRO GLU TYR ASP GLY PHE THR SER ILE PRO ASN LEU
SEQRES 8 B 318 ASN GLU GLY MET GLY VAL GLY ARG ILE THR ASP LEU GLU
SEQRES 9 B 318 LYS VAL GLU ARG PHE THR ASN LEU MET TRP PRO GLU GLY
SEQRES 10 B 318 ASN LYS ASP PHE CYS GLU THR VAL TYR SER TYR GLY LYS
SEQRES 11 B 318 ARG MET ALA GLU VAL ASP HIS ILE LEU LYS MET MET VAL
SEQRES 12 B 318 PHE GLU SER PHE GLY MET GLU LYS HIS PHE ASP SER PHE
SEQRES 13 B 318 CYS GLU SER THR ASN TYR LEU LEU HIS PHE MET ARG TYR
SEQRES 14 B 318 GLN GLN PRO GLY LYS ASP GLY ARG SER PRO ALA LEU SER
SEQRES 15 B 318 LEU HIS LYS ASP LYS SER ILE LEU THR ILE VAL ASN GLN
SEQRES 16 B 318 ASN ASP VAL LYS GLY LEU GLU PHE GLU THR LYS ASP GLY
SEQRES 17 B 318 GLU TRP ILE LEU PRO THR ALA ASP ASN HIS ILE VAL LEU
SEQRES 18 B 318 LEU GLY ASP CYS PHE MET ALA TRP SER ASN GLY ARG LEU
SEQRES 19 B 318 HIS SER PRO LEU HIS ARG VAL THR LEU VAL ALA ASN GLN
SEQRES 20 B 318 ALA ARG LEU SER THR SER SER PHE SER PHE PRO LYS ASP
SEQRES 21 B 318 ILE ILE GLU THR PRO ALA GLU LEU VAL ASP GLU GLU HIS
SEQRES 22 B 318 PRO LEU LEU PHE ASN PRO PHE GLU ILE THR GLU LEU LEU
SEQRES 23 B 318 ALA TYR CYS PHE THR LYS GLU GLY ALA LYS ALA VAL CYS
SEQRES 24 B 318 ASP LEU LYS GLN TYR LYS ALA TYR THR GLY ALA LEU GLU
SEQRES 25 B 318 HIS HIS HIS HIS HIS HIS
HET FE A 401 1
HET SIN A 402 8
HET YTC A 403 29
HET YTN A 404 29
HET FE B 401 1
HET SIN B 402 8
HET YTC B 403 29
HET YTN B 404 29
HETNAM FE FE (III) ION
HETNAM SIN SUCCINIC ACID
HETNAM YTC (3~{S},4~{S})-4-(1,3-BENZODIOXOL-5-YLMETHYL)-3-[(3,4,5-
HETNAM 2 YTC TRIMETHOXYPHENYL)METHYL]OXOLAN-2-ONE
HETNAM YTN (3~{R},4~{R})-4-(1,3-BENZODIOXOL-5-YLMETHYL)-3-[(3,4,5-
HETNAM 2 YTN TRIMETHOXYPHENYL)METHYL]OXOLAN-2-ONE
FORMUL 3 FE 2(FE 3+)
FORMUL 4 SIN 2(C4 H6 O4)
FORMUL 5 YTC 2(C22 H24 O7)
FORMUL 6 YTN 2(C22 H24 O7)
FORMUL 11 HOH *451(H2 O)
HELIX 1 AA1 SER A 15 LEU A 19 5 5
HELIX 2 AA2 THR A 23 TYR A 40 1 18
HELIX 3 AA3 SER A 51 ASN A 67 1 17
HELIX 4 AA4 PRO A 69 MET A 74 1 6
HELIX 5 AA5 LEU A 75 GLY A 77 5 3
HELIX 6 AA6 ASP A 102 TRP A 114 1 13
HELIX 7 AA7 ASN A 118 PHE A 147 1 30
HELIX 8 AA8 MET A 149 LYS A 151 5 3
HELIX 9 AA9 HIS A 152 GLU A 158 1 7
HELIX 10 AB1 GLY A 223 SER A 230 1 8
HELIX 11 AB2 PRO A 265 VAL A 269 5 5
HELIX 12 AB3 ILE A 282 PHE A 290 1 9
HELIX 13 AB4 GLY A 294 VAL A 298 5 5
HELIX 14 AB5 ASP A 300 TYR A 304 5 5
HELIX 15 AB6 GLU A 312 HIS A 316 5 5
HELIX 16 AB7 SER B 15 LEU B 19 5 5
HELIX 17 AB8 THR B 23 TYR B 40 1 18
HELIX 18 AB9 SER B 51 ASN B 67 1 17
HELIX 19 AC1 PRO B 69 MET B 74 1 6
HELIX 20 AC2 LEU B 75 GLY B 77 5 3
HELIX 21 AC3 ASP B 102 TRP B 114 1 13
HELIX 22 AC4 ASN B 118 PHE B 147 1 30
HELIX 23 AC5 GLY B 223 SER B 230 1 8
HELIX 24 AC6 PRO B 265 VAL B 269 5 5
HELIX 25 AC7 GLU B 281 PHE B 290 1 10
HELIX 26 AC8 GLY B 294 VAL B 298 5 5
HELIX 27 AC9 ASP B 300 TYR B 304 5 5
HELIX 28 AD1 GLU B 312 HIS B 316 5 5
SHEET 1 AA1 8 VAL A 11 ASP A 13 0
SHEET 2 AA1 8 CYS A 42 VAL A 46 1 O GLU A 44 N ILE A 12
SHEET 3 AA1 8 HIS A 218 LEU A 222 -1 O HIS A 218 N ALA A 45
SHEET 4 AA1 8 LEU A 190 ASN A 194 -1 N VAL A 193 O ILE A 219
SHEET 5 AA1 8 ARG A 249 PHE A 257 -1 O THR A 252 N ASN A 194
SHEET 6 AA1 8 ASN A 161 TYR A 169 -1 N TYR A 169 O ARG A 249
SHEET 7 AA1 8 ASN A 92 GLY A 98 -1 N GLU A 93 O ARG A 168
SHEET 8 AA1 8 THR A 86 ILE A 88 -1 N THR A 86 O GLY A 94
SHEET 1 AA2 4 SER A 178 HIS A 184 0
SHEET 2 AA2 4 HIS A 239 LEU A 243 -1 O VAL A 241 N ALA A 180
SHEET 3 AA2 4 LEU A 201 GLU A 204 -1 N GLU A 202 O ARG A 240
SHEET 4 AA2 4 TRP A 210 ILE A 211 -1 O ILE A 211 N PHE A 203
SHEET 1 AA3 2 ILE A 261 ILE A 262 0
SHEET 2 AA3 2 PHE A 280 GLU A 281 -1 O PHE A 280 N ILE A 262
SHEET 1 AA4 8 VAL B 11 ASP B 13 0
SHEET 2 AA4 8 CYS B 42 VAL B 46 1 O GLU B 44 N ILE B 12
SHEET 3 AA4 8 HIS B 218 LEU B 222 -1 O HIS B 218 N ALA B 45
SHEET 4 AA4 8 LEU B 190 ASN B 194 -1 N VAL B 193 O ILE B 219
SHEET 5 AA4 8 ARG B 249 PRO B 258 -1 O THR B 252 N ASN B 194
SHEET 6 AA4 8 THR B 160 TYR B 169 -1 N ASN B 161 O PHE B 257
SHEET 7 AA4 8 ASN B 92 GLY B 98 -1 N VAL B 97 O LEU B 164
SHEET 8 AA4 8 THR B 86 ILE B 88 -1 N THR B 86 O GLY B 94
SHEET 1 AA5 4 SER B 178 HIS B 184 0
SHEET 2 AA5 4 HIS B 239 LEU B 243 -1 O LEU B 243 N SER B 178
SHEET 3 AA5 4 LEU B 201 GLU B 204 -1 N GLU B 202 O ARG B 240
SHEET 4 AA5 4 TRP B 210 ILE B 211 -1 O ILE B 211 N PHE B 203
LINK NE2 HIS A 184 FE FE A 401 1555 1555 2.25
LINK OD1 ASP A 186 FE FE A 401 1555 1555 2.22
LINK NE2 HIS A 239 FE FE A 401 1555 1555 2.22
LINK FE FE A 401 O4 SIN A 402 1555 1555 1.94
LINK FE FE A 401 O HOH A 573 1555 1555 2.46
LINK NE2 HIS B 184 FE FE B 401 1555 1555 2.34
LINK OD1 ASP B 186 FE FE B 401 1555 1555 2.24
LINK NE2 HIS B 239 FE FE B 401 1555 1555 2.20
LINK FE FE B 401 O3 SIN B 402 1555 1555 2.22
LINK FE FE B 401 O HOH B 569 1555 1555 2.25
CRYST1 100.763 100.763 172.602 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009924 0.005730 0.000000 0.00000
SCALE2 0.000000 0.011460 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005794 0.00000