HEADER VIRAL PROTEIN 08-FEB-21 7E3J TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RBD BINDING TO DOG ACE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACE2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOGS; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 10 2; SOURCE 11 ORGANISM_COMMON: 2019-NCOV; SOURCE 12 ORGANISM_TAXID: 2697049; SOURCE 13 GENE: S, 2; SOURCE 14 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS SARS-COV-2, SPIKE, RBD, RECEPTOR BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,Y.ZHANG REVDAT 6 29-NOV-23 7E3J 1 REMARK REVDAT 5 13-OCT-21 7E3J 1 JRNL REVDAT 4 25-AUG-21 7E3J 1 AUTHOR JRNL REVDAT 3 28-JUL-21 7E3J 1 SOURCE REVDAT 2 07-JUL-21 7E3J 1 JRNL REVDAT 1 07-APR-21 7E3J 0 JRNL AUTH Z.ZHANG,Y.ZHANG,K.LIU,Y.LI,Q.LU,Q.WANG,Y.ZHANG,L.WANG, JRNL AUTH 2 H.LIAO,A.ZHENG,S.MA,Z.FAN,H.LI,W.HUANG,Y.BI,X.ZHAO,Q.WANG, JRNL AUTH 3 G.F.GAO,H.XIAO,Z.TONG,J.QI,Y.SUN JRNL TITL THE MOLECULAR BASIS FOR SARS-COV-2 BINDING TO DOG ACE2. JRNL REF NAT COMMUN V. 12 4195 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34234119 JRNL DOI 10.1038/S41467-021-24326-Y REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 29668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2600 - 6.4500 0.95 2970 158 0.2067 0.2115 REMARK 3 2 6.4500 - 5.1200 0.98 2912 148 0.2191 0.2334 REMARK 3 3 5.1200 - 4.4700 0.98 2901 136 0.1820 0.1888 REMARK 3 4 4.4700 - 4.0600 0.98 2839 159 0.1928 0.2009 REMARK 3 5 4.0600 - 3.7700 0.98 2850 138 0.2172 0.2437 REMARK 3 6 3.7700 - 3.5500 0.99 2872 153 0.2382 0.2627 REMARK 3 7 3.5500 - 3.3700 0.99 2836 162 0.2729 0.3246 REMARK 3 8 3.3700 - 3.2200 0.96 2790 133 0.2862 0.3198 REMARK 3 9 3.2200 - 3.1000 0.93 2689 147 0.2978 0.3692 REMARK 3 10 3.1000 - 2.9900 0.89 2551 124 0.3222 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.422 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.809 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7449 REMARK 3 ANGLE : 0.531 10122 REMARK 3 CHIRALITY : 0.041 1061 REMARK 3 PLANARITY : 0.004 1308 REMARK 3 DIHEDRAL : 22.676 2721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -60.5394 30.9174 -25.6703 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2878 REMARK 3 T33: 0.2611 T12: 0.0294 REMARK 3 T13: 0.0170 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2994 L22: 0.1212 REMARK 3 L33: 0.2172 L12: 0.2513 REMARK 3 L13: -0.1828 L23: -0.0294 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0047 S13: 0.0090 REMARK 3 S21: -0.0311 S22: -0.0421 S23: 0.0045 REMARK 3 S31: -0.0487 S32: 0.0530 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A):-112.6123 23.6311 -17.8612 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.3309 REMARK 3 T33: 0.3161 T12: 0.0299 REMARK 3 T13: -0.0214 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.1735 L22: 0.1145 REMARK 3 L33: 0.0638 L12: -0.0671 REMARK 3 L13: 0.0162 L23: -0.0936 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: -0.0227 S13: 0.0091 REMARK 3 S21: -0.0045 S22: 0.0668 S23: 0.1347 REMARK 3 S31: 0.1171 S32: -0.0519 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% 1,4-DIOXANE, 0.1 M TRIS PH 8.0,15% REMARK 280 POLYETHYLENE GLYCOL 3,350., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 84.12800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 105.59800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 84.12800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 105.59800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 84.12800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 105.59800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 84.12800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 105.59800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 84.12800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 105.59800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 84.12800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 105.59800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 84.12800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 105.59800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 84.12800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 84.12800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 105.59800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 708 REMARK 465 SER A 709 REMARK 465 ARG A 710 REMARK 465 ILE A 711 REMARK 465 ASN A 712 REMARK 465 ASP A 713 REMARK 465 VAL A 714 REMARK 465 PHE A 715 REMARK 465 ARG A 716 REMARK 465 LEU A 717 REMARK 465 ASP A 718 REMARK 465 ASP A 719 REMARK 465 ASN A 720 REMARK 465 SER A 721 REMARK 465 ILE A 727 REMARK 465 GLN A 728 REMARK 465 PRO A 729 REMARK 465 THR A 730 REMARK 465 LEU A 731 REMARK 465 GLY A 732 REMARK 465 PRO A 733 REMARK 465 PRO A 734 REMARK 465 TYR A 735 REMARK 465 GLU A 736 REMARK 465 PRO A 737 REMARK 465 PRO A 738 REMARK 465 VAL A 739 REMARK 465 THR A 740 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 GLU A 536 CG CD OE1 OE2 REMARK 470 ARG A 621 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 702 CG CD OE1 OE2 REMARK 470 ARG B 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 114 OG1 THR A 118 2.16 REMARK 500 NH1 ARG A 644 OE1 GLU A 667 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 212 -71.82 -63.76 REMARK 500 PRO A 258 3.05 -68.18 REMARK 500 GLU A 634 70.24 36.33 REMARK 500 TRP A 635 136.34 -35.79 REMARK 500 ARG A 678 -2.28 74.86 REMARK 500 ILE A 679 -59.66 -125.55 REMARK 500 ASP B 428 33.62 -97.71 REMARK 500 ALA B 522 68.61 60.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 374 NE2 REMARK 620 2 HIS A 378 NE2 85.0 REMARK 620 3 GLU A 402 OE2 107.1 88.9 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6LZG RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE NCBI REFERENCE SEQUENCE FOR DOG ACE2 IS XP_025292925.2. DBREF 7E3J A 18 740 PDB 7E3J 7E3J 18 740 DBREF 7E3J B 333 527 UNP P0DTC2 SPIKE_SARS2 333 527 SEQRES 1 A 723 MET GLN SER THR GLU ASP LEU VAL LYS THR PHE LEU GLU SEQRES 2 A 723 LYS PHE ASN TYR GLU ALA GLU GLU LEU SER TYR GLN SER SEQRES 3 A 723 SER LEU ALA SER TRP ASN TYR ASN ILE ASN ILE THR ASP SEQRES 4 A 723 GLU ASN VAL GLN LYS MET ASN ASN ALA GLY ALA LYS TRP SEQRES 5 A 723 SER ALA PHE TYR GLU GLU GLN SER LYS LEU ALA LYS THR SEQRES 6 A 723 TYR PRO LEU GLU GLU ILE GLN ASP SER THR VAL LYS ARG SEQRES 7 A 723 GLN LEU ARG ALA LEU GLN HIS SER GLY SER SER VAL LEU SEQRES 8 A 723 SER ALA ASP LYS ASN GLN ARG LEU ASN THR ILE LEU ASN SEQRES 9 A 723 SER MET SER THR ILE TYR SER THR GLY LYS ALA CYS ASN SEQRES 10 A 723 PRO SER ASN PRO GLN GLU CYS LEU LEU LEU GLU PRO GLY SEQRES 11 A 723 LEU ASP ASP ILE MET GLU ASN SER LYS ASP TYR ASN GLU SEQRES 12 A 723 ARG LEU TRP ALA TRP GLU GLY TRP ARG SER GLU VAL GLY SEQRES 13 A 723 LYS GLN LEU ARG PRO LEU TYR GLU GLU TYR VAL ALA LEU SEQRES 14 A 723 LYS ASN GLU MET ALA ARG ALA ASN ASN TYR GLU ASP TYR SEQRES 15 A 723 GLY ASP TYR TRP ARG GLY ASP TYR GLU GLU GLU TRP GLU SEQRES 16 A 723 ASN GLY TYR ASN TYR SER ARG ASN GLN LEU ILE ASP ASP SEQRES 17 A 723 VAL GLU HIS THR PHE THR GLN ILE MET PRO LEU TYR GLN SEQRES 18 A 723 HIS LEU HIS ALA TYR VAL ARG THR LYS LEU MET ASP THR SEQRES 19 A 723 TYR PRO SER TYR ILE SER PRO THR GLY CYS LEU PRO ALA SEQRES 20 A 723 HIS LEU LEU GLY ASP MET TRP GLY ARG PHE TRP THR ASN SEQRES 21 A 723 LEU TYR PRO LEU THR VAL PRO PHE GLY GLN LYS PRO ASN SEQRES 22 A 723 ILE ASP VAL THR ASN ALA MET VAL ASN GLN SER TRP ASP SEQRES 23 A 723 ALA ARG LYS ILE PHE LYS GLU ALA GLU LYS PHE PHE VAL SEQRES 24 A 723 SER VAL GLY LEU PRO ASN MET THR GLN GLU PHE TRP GLU SEQRES 25 A 723 ASN SER MET LEU THR GLU PRO SER ASP SER ARG LYS VAL SEQRES 26 A 723 VAL CYS HIS PRO THR ALA TRP ASP LEU GLY LYS GLY ASP SEQRES 27 A 723 PHE ARG ILE LYS MET CYS THR LYS VAL THR MET ASP ASP SEQRES 28 A 723 PHE LEU THR ALA HIS HIS GLU MET GLY HIS ILE GLN TYR SEQRES 29 A 723 ASP MET ALA TYR ALA ALA GLN PRO PHE LEU LEU ARG ASN SEQRES 30 A 723 GLY ALA ASN GLU GLY PHE HIS GLU ALA VAL GLY GLU ILE SEQRES 31 A 723 MET SER LEU SER ALA ALA THR PRO ASN HIS LEU LYS ASN SEQRES 32 A 723 ILE GLY LEU LEU PRO PRO SER PHE PHE GLU ASP SER GLU SEQRES 33 A 723 THR GLU ILE ASN PHE LEU LEU LYS GLN ALA LEU THR ILE SEQRES 34 A 723 VAL GLY THR LEU PRO PHE THR TYR MET LEU GLU LYS TRP SEQRES 35 A 723 ARG TRP MET VAL PHE LYS GLY GLU ILE PRO LYS ASP GLN SEQRES 36 A 723 TRP MET LYS THR TRP TRP GLU MET LYS ARG ASN ILE VAL SEQRES 37 A 723 GLY VAL VAL GLU PRO VAL PRO HIS ASP GLU THR TYR CYS SEQRES 38 A 723 ASP PRO ALA SER LEU PHE HIS VAL ALA ASN ASP TYR SER SEQRES 39 A 723 PHE ILE ARG TYR TYR THR ARG THR ILE TYR GLN PHE GLN SEQRES 40 A 723 PHE GLN GLU ALA LEU CYS GLN ILE ALA LYS HIS GLU GLY SEQRES 41 A 723 PRO LEU HIS LYS CYS ASP ILE SER ASN SER SER GLU ALA SEQRES 42 A 723 GLY GLN LYS LEU LEU GLU MET LEU LYS LEU GLY LYS SER SEQRES 43 A 723 LYS PRO TRP THR TYR ALA LEU GLU ILE VAL VAL GLY ALA SEQRES 44 A 723 LYS ASN MET ASP VAL ARG PRO LEU LEU ASN TYR PHE GLU SEQRES 45 A 723 PRO LEU PHE THR TRP LEU LYS GLU GLN ASN ARG ASN SER SEQRES 46 A 723 PHE VAL GLY TRP ASN THR ASP TRP SER PRO TYR ALA ASP SEQRES 47 A 723 GLN SER ILE LYS VAL ARG ILE SER LEU LYS SER ALA LEU SEQRES 48 A 723 GLY GLU LYS ALA TYR GLU TRP ASN ASN ASN GLU MET TYR SEQRES 49 A 723 LEU PHE ARG SER SER ILE ALA TYR ALA MET ARG GLN TYR SEQRES 50 A 723 PHE SER GLU VAL LYS ASN GLN THR ILE PRO PHE VAL GLU SEQRES 51 A 723 ASP ASN VAL TRP VAL SER ASP LEU LYS PRO ARG ILE SER SEQRES 52 A 723 PHE ASN PHE PHE VAL THR SER PRO GLY ASN VAL SER ASP SEQRES 53 A 723 ILE ILE PRO ARG THR GLU VAL GLU GLU ALA ILE ARG MET SEQRES 54 A 723 TYR ARG SER ARG ILE ASN ASP VAL PHE ARG LEU ASP ASP SEQRES 55 A 723 ASN SER LEU GLU PHE LEU GLY ILE GLN PRO THR LEU GLY SEQRES 56 A 723 PRO PRO TYR GLU PRO PRO VAL THR SEQRES 1 B 195 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 195 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 195 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 195 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 195 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 195 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 195 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 195 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 195 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 195 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 195 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 195 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 195 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 B 195 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 195 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO HET ZN A 801 1 HET NAG B 601 14 HETNAM ZN ZINC ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 ZN ZN 2+ FORMUL 4 NAG C8 H15 N O6 HELIX 1 AA1 SER A 20 ASN A 53 1 34 HELIX 2 AA2 GLU A 57 THR A 82 1 26 HELIX 3 AA3 PRO A 84 ILE A 88 5 5 HELIX 4 AA4 SER A 91 GLN A 101 1 11 HELIX 5 AA5 SER A 109 GLY A 130 1 22 HELIX 6 AA6 PRO A 146 SER A 155 1 10 HELIX 7 AA7 ASP A 157 VAL A 172 1 16 HELIX 8 AA8 VAL A 172 ASN A 194 1 23 HELIX 9 AA9 ASP A 198 GLY A 205 1 8 HELIX 10 AB1 ARG A 219 TYR A 252 1 34 HELIX 11 AB2 HIS A 265 LEU A 267 5 3 HELIX 12 AB3 TRP A 275 ASN A 277 5 3 HELIX 13 AB4 LEU A 278 VAL A 283 1 6 HELIX 14 AB5 VAL A 293 ASN A 299 1 7 HELIX 15 AB6 ASP A 303 VAL A 318 1 16 HELIX 16 AB7 THR A 324 SER A 331 1 8 HELIX 17 AB8 THR A 365 TYR A 385 1 21 HELIX 18 AB9 ALA A 386 GLN A 388 5 3 HELIX 19 AC1 PRO A 389 ARG A 393 5 5 HELIX 20 AC2 GLY A 399 ALA A 413 1 15 HELIX 21 AC3 THR A 414 ILE A 421 1 8 HELIX 22 AC4 ASP A 431 VAL A 447 1 17 HELIX 23 AC5 GLY A 448 GLY A 466 1 19 HELIX 24 AC6 PRO A 469 ASP A 471 5 3 HELIX 25 AC7 GLN A 472 ILE A 484 1 13 HELIX 26 AC8 CYS A 498 SER A 502 5 5 HELIX 27 AC9 LEU A 503 ASN A 508 1 6 HELIX 28 AD1 ILE A 513 ALA A 533 1 21 HELIX 29 AD2 PRO A 538 CYS A 542 5 5 HELIX 30 AD3 SER A 547 GLY A 561 1 15 HELIX 31 AD4 PRO A 565 GLY A 575 1 11 HELIX 32 AD5 VAL A 581 PHE A 588 1 8 HELIX 33 AD6 PHE A 588 GLN A 598 1 11 HELIX 34 AD7 ASN A 636 VAL A 658 1 23 HELIX 35 AD8 VAL A 666 ASP A 668 5 3 HELIX 36 AD9 PRO A 696 TYR A 707 1 12 HELIX 37 AE1 PHE B 338 ASN B 343 1 6 HELIX 38 AE2 SER B 349 TRP B 353 5 5 HELIX 39 AE3 TYR B 365 ASN B 370 1 6 HELIX 40 AE4 ASP B 405 ILE B 410 5 6 HELIX 41 AE5 GLY B 416 ASN B 422 1 7 HELIX 42 AE6 SER B 438 SER B 443 1 6 HELIX 43 AE7 GLY B 502 TYR B 505 5 4 SHEET 1 AA1 2 LYS A 131 ASN A 134 0 SHEET 2 AA1 2 ASN A 137 LEU A 143 -1 O LEU A 142 N ALA A 132 SHEET 1 AA2 2 LEU A 262 PRO A 263 0 SHEET 2 AA2 2 VAL A 487 VAL A 488 1 O VAL A 488 N LEU A 262 SHEET 1 AA3 2 THR A 347 GLY A 352 0 SHEET 2 AA3 2 ASP A 355 LYS A 359 -1 O ARG A 357 N TRP A 349 SHEET 1 AA4 3 ILE A 618 ARG A 621 0 SHEET 2 AA4 3 SER A 680 SER A 687 -1 O PHE A 683 N ILE A 618 SHEET 3 AA4 3 VAL A 670 LYS A 676 -1 N SER A 673 O ASN A 682 SHEET 1 AA5 3 ILE A 618 ARG A 621 0 SHEET 2 AA5 3 SER A 680 SER A 687 -1 O PHE A 683 N ILE A 618 SHEET 3 AA5 3 ASN A 690 ILE A 694 -1 O ASN A 690 N SER A 687 SHEET 1 AA6 5 ASN B 354 ILE B 358 0 SHEET 2 AA6 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA6 5 PRO B 507 GLU B 516 -1 O VAL B 512 N ASP B 398 SHEET 4 AA6 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA6 5 THR B 376 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA7 2 LEU B 452 ARG B 454 0 SHEET 2 AA7 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA8 2 TYR B 473 GLN B 474 0 SHEET 2 AA8 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS A 133 CYS A 141 1555 1555 2.03 SSBOND 2 CYS A 344 CYS A 361 1555 1555 2.03 SSBOND 3 CYS A 530 CYS A 542 1555 1555 2.03 SSBOND 4 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 5 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 6 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 7 CYS B 480 CYS B 488 1555 1555 2.03 LINK ND2 ASN B 343 C1 NAG B 601 1555 1555 1.44 LINK NE2 HIS A 374 ZN ZN A 801 1555 1555 2.23 LINK NE2 HIS A 378 ZN ZN A 801 1555 1555 2.27 LINK OE2 GLU A 402 ZN ZN A 801 1555 1555 2.03 CISPEP 1 GLU A 145 PRO A 146 0 -1.44 CRYST1 168.256 168.256 211.196 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004735 0.00000