HEADER HYDROLASE 11-FEB-21 7E4F TITLE MYCOBACTERIUM TUBERCULOSIS ENOLASE MUTANT - E204A COMPLEX WITH TITLE 2 PHOSPHOENOLPYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 5 DEHYDRATASE; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: ENO, RV1023, MTCY10G2.26C; SOURCE 7 EXPRESSION_SYSTEM: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1772 KEYWDS COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AHMAD,R.K.PAL,B.K.BISWAL REVDAT 3 29-NOV-23 7E4F 1 REMARK REVDAT 2 08-NOV-23 7E4F 1 JRNL REVDAT 1 16-FEB-22 7E4F 0 JRNL AUTH M.AHMAD,B.JHA,S.BOSE,S.TIWARI,A.DWIVEDY,D.KAR,R.PAL, JRNL AUTH 2 R.MARIADASSE,T.PARISH,J.JEYAKANTHAN,K.R.VINOTHKUMAR, JRNL AUTH 3 B.K.BISWAL JRNL TITL STRUCTURAL SNAPSHOTS OF MYCOBACTERIUM TUBERCULOSIS ENOLASE JRNL TITL 2 REVEAL DUAL MODE OF 2PG BINDING AND ITS IMPLICATION IN JRNL TITL 3 ENZYME CATALYSIS. JRNL REF IUCRJ V. 10 738 2023 JRNL REFN ESSN 2052-2525 JRNL PMID 37860976 JRNL DOI 10.1107/S2052252523008485 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 18935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3208 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2996 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4366 ; 1.859 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6909 ; 2.469 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 6.592 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;37.772 ;22.293 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;15.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3724 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 650 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7E4F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CKP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM ACETATE, BIS-TRIS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.89050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.42550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 69.89050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 45.42550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.89050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 45.42550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 69.89050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.42550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.89050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.42550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.89050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 45.42550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 69.89050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 45.42550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.89050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.89050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 45.42550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 425 REMARK 465 CYS A 426 REMARK 465 GLU A 427 REMARK 465 THR A 428 REMARK 465 LYS A 429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 8 CZ NH1 NH2 REMARK 470 SER A 42 OG REMARK 470 LYS A 65 CE NZ REMARK 470 LYS A 189 CE NZ REMARK 470 LYS A 193 CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 GLU A 268 CD OE1 OE2 REMARK 470 ASP A 303 OD1 REMARK 470 GLU A 318 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 395 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 252 -54.56 -120.27 REMARK 500 ASP A 284 57.72 32.97 REMARK 500 ASP A 310 -83.79 -108.39 REMARK 500 VAL A 314 47.30 36.69 REMARK 500 ALA A 329 174.12 67.11 REMARK 500 ARG A 392 122.13 81.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 241 OD2 REMARK 620 2 GLU A 283 OE2 76.7 REMARK 620 3 ASP A 310 OD2 166.4 90.6 REMARK 620 4 PEP A 501 O1 86.7 97.9 90.2 REMARK 620 5 PEP A 501 O2' 91.0 143.1 96.5 46.1 REMARK 620 6 HOH A 614 O 122.2 157.1 71.4 96.2 55.9 REMARK 620 7 HOH A 637 O 87.5 93.6 98.3 165.6 120.9 75.8 REMARK 620 N 1 2 3 4 5 6 DBREF 7E4F A 1 429 UNP P9WNL1 ENO_MYCTU 1 429 SEQADV 7E4F MET A -6 UNP P9WNL1 INITIATING METHIONINE SEQADV 7E4F HIS A -5 UNP P9WNL1 EXPRESSION TAG SEQADV 7E4F HIS A -4 UNP P9WNL1 EXPRESSION TAG SEQADV 7E4F HIS A -3 UNP P9WNL1 EXPRESSION TAG SEQADV 7E4F HIS A -2 UNP P9WNL1 EXPRESSION TAG SEQADV 7E4F HIS A -1 UNP P9WNL1 EXPRESSION TAG SEQADV 7E4F HIS A 0 UNP P9WNL1 EXPRESSION TAG SEQADV 7E4F ALA A 204 UNP P9WNL1 GLU 204 ENGINEERED MUTATION SEQRES 1 A 436 MET HIS HIS HIS HIS HIS HIS MET PRO ILE ILE GLU GLN SEQRES 2 A 436 VAL ARG ALA ARG GLU ILE LEU ASP SER ARG GLY ASN PRO SEQRES 3 A 436 THR VAL GLU VAL GLU VAL ALA LEU ILE ASP GLY THR PHE SEQRES 4 A 436 ALA ARG ALA ALA VAL PRO SER GLY ALA SER THR GLY GLU SEQRES 5 A 436 HIS GLU ALA VAL GLU LEU ARG ASP GLY GLY ASP ARG TYR SEQRES 6 A 436 GLY GLY LYS GLY VAL GLN LYS ALA VAL GLN ALA VAL LEU SEQRES 7 A 436 ASP GLU ILE GLY PRO ALA VAL ILE GLY LEU ASN ALA ASP SEQRES 8 A 436 ASP GLN ARG LEU VAL ASP GLN ALA LEU VAL ASP LEU ASP SEQRES 9 A 436 GLY THR PRO ASP LYS SER ARG LEU GLY GLY ASN ALA ILE SEQRES 10 A 436 LEU GLY VAL SER LEU ALA VAL ALA LYS ALA ALA ALA ASP SEQRES 11 A 436 SER ALA GLU LEU PRO LEU PHE ARG TYR VAL GLY GLY PRO SEQRES 12 A 436 ASN ALA HIS ILE LEU PRO VAL PRO MET MET ASN ILE LEU SEQRES 13 A 436 ASN GLY GLY ALA HIS ALA ASP THR ALA VAL ASP ILE GLN SEQRES 14 A 436 GLU PHE MET VAL ALA PRO ILE GLY ALA PRO SER PHE VAL SEQRES 15 A 436 GLU ALA LEU ARG TRP GLY ALA GLU VAL TYR HIS ALA LEU SEQRES 16 A 436 LYS SER VAL LEU LYS LYS GLU GLY LEU SER THR GLY LEU SEQRES 17 A 436 GLY ASP ALA GLY GLY PHE ALA PRO ASP VAL ALA GLY THR SEQRES 18 A 436 THR ALA ALA LEU ASP LEU ILE SER ARG ALA ILE GLU SER SEQRES 19 A 436 ALA GLY LEU ARG PRO GLY ALA ASP VAL ALA LEU ALA LEU SEQRES 20 A 436 ASP ALA ALA ALA THR GLU PHE PHE THR ASP GLY THR GLY SEQRES 21 A 436 TYR VAL PHE GLU GLY THR THR ARG THR ALA ASP GLN MET SEQRES 22 A 436 THR GLU PHE TYR ALA GLY LEU LEU GLY ALA TYR PRO LEU SEQRES 23 A 436 VAL SER ILE GLU ASP PRO LEU SER GLU ASP ASP TRP ASP SEQRES 24 A 436 GLY TRP ALA ALA LEU THR ALA SER ILE GLY ASP ARG VAL SEQRES 25 A 436 GLN ILE VAL GLY ASP ASP ILE PHE VAL THR ASN PRO GLU SEQRES 26 A 436 ARG LEU GLU GLU GLY ILE GLU ARG GLY VAL ALA ASN ALA SEQRES 27 A 436 LEU LEU VAL LYS VAL ASN GLN ILE GLY THR LEU THR GLU SEQRES 28 A 436 THR LEU ASP ALA VAL THR LEU ALA HIS HIS GLY GLY TYR SEQRES 29 A 436 ARG THR MET ILE SER HIS ARG SER GLY GLU THR GLU ASP SEQRES 30 A 436 THR MET ILE ALA ASP LEU ALA VAL ALA ILE GLY SER GLY SEQRES 31 A 436 GLN ILE LYS THR GLY ALA PRO ALA ARG SER GLU ARG VAL SEQRES 32 A 436 ALA LYS TYR ASN GLN LEU LEU ARG ILE GLU GLU ALA LEU SEQRES 33 A 436 GLY ASP ALA ALA ARG TYR ALA GLY ASP LEU ALA PHE PRO SEQRES 34 A 436 ARG PHE ALA CYS GLU THR LYS HET PEP A 501 10 HET PEG A 502 7 HET PEG A 503 7 HET EDO A 504 4 HET ACT A 505 4 HET ACT A 506 4 HET MG A 507 1 HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEP C3 H5 O6 P FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 EDO C2 H6 O2 FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 MG MG 2+ FORMUL 9 HOH *143(H2 O) HELIX 1 AA1 ASP A 56 LYS A 61 5 6 HELIX 2 AA2 VAL A 63 GLU A 73 1 11 HELIX 3 AA3 GLU A 73 ILE A 79 1 7 HELIX 4 AA4 ASP A 85 GLY A 98 1 14 HELIX 5 AA5 GLY A 106 ALA A 125 1 20 HELIX 6 AA6 PRO A 128 GLY A 135 1 8 HELIX 7 AA7 GLY A 152 ALA A 155 5 4 HELIX 8 AA8 SER A 173 GLU A 195 1 23 HELIX 9 AA9 GLY A 213 ALA A 228 1 16 HELIX 10 AB1 ALA A 243 GLU A 246 5 4 HELIX 11 AB2 THR A 262 TYR A 277 1 16 HELIX 12 AB3 ASP A 290 GLY A 302 1 13 HELIX 13 AB4 ASN A 316 GLY A 327 1 12 HELIX 14 AB5 LYS A 335 GLY A 340 1 6 HELIX 15 AB6 THR A 341 GLY A 355 1 15 HELIX 16 AB7 THR A 371 ILE A 380 1 10 HELIX 17 AB8 ARG A 392 GLY A 410 1 19 HELIX 18 AB9 ASP A 411 ALA A 413 5 3 HELIX 19 AC1 GLY A 417 PHE A 421 5 5 SHEET 1 AA1 3 ILE A 4 LEU A 13 0 SHEET 2 AA1 3 PRO A 19 LEU A 27 -1 O GLU A 24 N ARG A 8 SHEET 3 AA1 3 PHE A 32 ALA A 36 -1 O ALA A 35 N VAL A 23 SHEET 1 AA2 2 ILE A 140 LEU A 141 0 SHEET 2 AA2 2 ARG A 414 TYR A 415 1 O ARG A 414 N LEU A 141 SHEET 1 AA3 9 VAL A 143 PRO A 144 0 SHEET 2 AA3 9 GLN A 384 LYS A 386 1 O ILE A 385 N VAL A 143 SHEET 3 AA3 9 ARG A 358 SER A 362 1 N ILE A 361 O LYS A 386 SHEET 4 AA3 9 ALA A 331 VAL A 334 1 N VAL A 334 O MET A 360 SHEET 5 AA3 9 GLN A 306 GLY A 309 1 N GLY A 309 O LEU A 333 SHEET 6 AA3 9 LEU A 279 GLU A 283 1 N ILE A 282 O VAL A 308 SHEET 7 AA3 9 ALA A 237 ASP A 241 1 N LEU A 238 O VAL A 280 SHEET 8 AA3 9 GLU A 163 ALA A 167 -1 N MET A 165 O ALA A 239 SHEET 9 AA3 9 MET A 146 ASN A 150 -1 N MET A 146 O VAL A 166 SHEET 1 AA4 3 PHE A 248 THR A 249 0 SHEET 2 AA4 3 GLY A 253 VAL A 255 -1 O GLY A 253 N THR A 249 SHEET 3 AA4 3 THR A 260 ARG A 261 -1 O ARG A 261 N TYR A 254 LINK OD2 ASP A 241 MG MG A 507 1555 1555 2.39 LINK OE2 GLU A 283 MG MG A 507 1555 1555 2.09 LINK OD2 ASP A 310 MG MG A 507 1555 1555 2.28 LINK O1 PEP A 501 MG MG A 507 1555 1555 2.70 LINK O2' PEP A 501 MG MG A 507 1555 1555 2.75 LINK MG MG A 507 O HOH A 614 1555 1555 2.59 LINK MG MG A 507 O HOH A 637 1555 1555 2.05 CRYST1 139.781 139.781 90.851 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011007 0.00000