HEADER IMMUNE SYSTEM 18-FEB-21 7E57 TITLE CRYSTAL STRUCTURE OF MURINE GITR-GITRL COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 18; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GITR LIGAND,GITRL,GLUCOCORTICOID-INDUCED TNF-RELATED LIGAND; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 18; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: GLUCOCORTICOID-INDUCED TNFR-RELATED PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TNFSF18, GITRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: TNFRSF18, GITR; SOURCE 13 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,S.TAN,L.FU,Y.CHAI,J.QI,G.F.GAO REVDAT 4 13-NOV-24 7E57 1 REMARK REVDAT 3 29-NOV-23 7E57 1 REMARK REVDAT 2 16-FEB-22 7E57 1 JRNL REVDAT 1 29-SEP-21 7E57 0 JRNL AUTH M.ZHAO,L.FU,Y.CHAI,M.SUN,Y.LI,S.WANG,J.QI,B.ZENG,L.KANG, JRNL AUTH 2 G.F.GAO,S.TAN JRNL TITL ATYPICAL TNF-TNFR SUPERFAMILY BINDING INTERFACE IN THE JRNL TITL 2 GITR-GITRL COMPLEX FOR T CELL ACTIVATION. JRNL REF CELL REP V. 36 09734 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34551288 JRNL DOI 10.1016/J.CELREP.2021.109734 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 9923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.276 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.480 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.8670 - 5.2390 0.97 2722 164 0.2682 0.2990 REMARK 3 2 5.2390 - 4.1599 0.96 2657 129 0.2599 0.3026 REMARK 3 3 4.1599 - 3.6346 0.92 2518 148 0.2879 0.3749 REMARK 3 4 3.6346 - 3.3024 0.55 1482 103 0.3207 0.3663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3684 REMARK 3 ANGLE : 0.701 4980 REMARK 3 CHIRALITY : 0.049 544 REMARK 3 PLANARITY : 0.005 633 REMARK 3 DIHEDRAL : 17.334 1418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77449 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q8O, 6A3V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M NICKEL (II) CHLORIDE REMARK 280 HEXAHYDRATE, 0.02M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.02M CADMIUM REMARK 280 CHLORIDE HYDRATE, 0.1M SODIUM ACETATE TRIHYDRATE, PH4.1, 20% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.28200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 MET A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 GLN A 12 REMARK 465 ARG A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 CYS A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 TRP A 21 REMARK 465 LEU A 22 REMARK 465 LEU A 23 REMARK 465 CYS A 24 REMARK 465 ILE A 25 REMARK 465 VAL A 26 REMARK 465 ALA A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 30 REMARK 465 MET A 31 REMARK 465 LEU A 32 REMARK 465 LEU A 33 REMARK 465 CYS A 34 REMARK 465 SER A 35 REMARK 465 LEU A 36 REMARK 465 GLY A 37 REMARK 465 THR A 38 REMARK 465 LEU A 39 REMARK 465 ILE A 40 REMARK 465 TYR A 41 REMARK 465 THR A 42 REMARK 465 SER A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 PRO A 46 REMARK 465 THR A 47 REMARK 465 ALA A 48 REMARK 465 ILE A 49 REMARK 465 GLU A 50 REMARK 465 LEU A 169 REMARK 465 PRO A 170 REMARK 465 PHE A 171 REMARK 465 ILE A 172 REMARK 465 SER A 173 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 MET B 4 REMARK 465 PRO B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 GLN B 12 REMARK 465 ARG B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 ARG B 16 REMARK 465 CYS B 17 REMARK 465 LYS B 18 REMARK 465 LYS B 19 REMARK 465 SER B 20 REMARK 465 TRP B 21 REMARK 465 LEU B 22 REMARK 465 LEU B 23 REMARK 465 CYS B 24 REMARK 465 ILE B 25 REMARK 465 VAL B 26 REMARK 465 ALA B 27 REMARK 465 LEU B 28 REMARK 465 LEU B 29 REMARK 465 LEU B 30 REMARK 465 MET B 31 REMARK 465 LEU B 32 REMARK 465 LEU B 33 REMARK 465 CYS B 34 REMARK 465 SER B 35 REMARK 465 LEU B 36 REMARK 465 GLY B 37 REMARK 465 THR B 38 REMARK 465 LEU B 39 REMARK 465 ILE B 40 REMARK 465 TYR B 41 REMARK 465 THR B 42 REMARK 465 SER B 43 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 PRO B 46 REMARK 465 THR B 47 REMARK 465 ALA B 48 REMARK 465 ILE B 49 REMARK 465 GLU B 50 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 ALA C 3 REMARK 465 TRP C 4 REMARK 465 ALA C 5 REMARK 465 MET C 6 REMARK 465 LEU C 7 REMARK 465 TYR C 8 REMARK 465 GLY C 9 REMARK 465 VAL C 10 REMARK 465 SER C 11 REMARK 465 MET C 12 REMARK 465 LEU C 13 REMARK 465 CYS C 14 REMARK 465 VAL C 15 REMARK 465 LEU C 16 REMARK 465 ASP C 17 REMARK 465 LEU C 18 REMARK 465 GLY C 19 REMARK 465 GLN C 20 REMARK 465 PRO C 21 REMARK 465 SER C 22 REMARK 465 VAL C 23 REMARK 465 VAL C 24 REMARK 465 GLU C 25 REMARK 465 GLU C 26 REMARK 465 ALA C 49 REMARK 465 PRO C 50 REMARK 465 GLY C 51 REMARK 465 LYS C 52 REMARK 465 GLU C 53 REMARK 465 ASP C 54 REMARK 465 CYS C 55 REMARK 465 LEU C 146 REMARK 465 PRO C 147 REMARK 465 THR C 148 REMARK 465 GLU C 149 REMARK 465 GLN C 150 REMARK 465 TYR C 151 REMARK 465 GLY C 152 REMARK 465 HIS C 153 REMARK 465 LEU C 154 REMARK 465 THR C 155 REMARK 465 VAL C 156 REMARK 465 ILE C 157 REMARK 465 PHE C 158 REMARK 465 LEU C 159 REMARK 465 VAL C 160 REMARK 465 MET C 161 REMARK 465 ALA C 162 REMARK 465 ALA C 163 REMARK 465 CYS C 164 REMARK 465 ILE C 165 REMARK 465 PHE C 166 REMARK 465 PHE C 167 REMARK 465 LEU C 168 REMARK 465 THR C 169 REMARK 465 THR C 170 REMARK 465 VAL C 171 REMARK 465 GLN C 172 REMARK 465 LEU C 173 REMARK 465 GLY C 174 REMARK 465 LEU C 175 REMARK 465 HIS C 176 REMARK 465 ILE C 177 REMARK 465 TRP C 178 REMARK 465 GLN C 179 REMARK 465 LEU C 180 REMARK 465 ARG C 181 REMARK 465 ARG C 182 REMARK 465 GLN C 183 REMARK 465 HIS C 184 REMARK 465 MET C 185 REMARK 465 CYS C 186 REMARK 465 PRO C 187 REMARK 465 ARG C 188 REMARK 465 GLU C 189 REMARK 465 THR C 190 REMARK 465 GLN C 191 REMARK 465 PRO C 192 REMARK 465 PHE C 193 REMARK 465 ALA C 194 REMARK 465 GLU C 195 REMARK 465 VAL C 196 REMARK 465 GLN C 197 REMARK 465 LEU C 198 REMARK 465 SER C 199 REMARK 465 ALA C 200 REMARK 465 GLU C 201 REMARK 465 ASP C 202 REMARK 465 ALA C 203 REMARK 465 CYS C 204 REMARK 465 SER C 205 REMARK 465 PHE C 206 REMARK 465 GLN C 207 REMARK 465 PHE C 208 REMARK 465 PRO C 209 REMARK 465 GLU C 210 REMARK 465 GLU C 211 REMARK 465 GLU C 212 REMARK 465 ARG C 213 REMARK 465 GLY C 214 REMARK 465 GLU C 215 REMARK 465 GLN C 216 REMARK 465 THR C 217 REMARK 465 GLU C 218 REMARK 465 GLU C 219 REMARK 465 LYS C 220 REMARK 465 CYS C 221 REMARK 465 HIS C 222 REMARK 465 LEU C 223 REMARK 465 GLY C 224 REMARK 465 GLY C 225 REMARK 465 ARG C 226 REMARK 465 TRP C 227 REMARK 465 PRO C 228 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ALA D 3 REMARK 465 TRP D 4 REMARK 465 ALA D 5 REMARK 465 MET D 6 REMARK 465 LEU D 7 REMARK 465 TYR D 8 REMARK 465 GLY D 9 REMARK 465 VAL D 10 REMARK 465 SER D 11 REMARK 465 MET D 12 REMARK 465 LEU D 13 REMARK 465 CYS D 14 REMARK 465 VAL D 15 REMARK 465 LEU D 16 REMARK 465 ASP D 17 REMARK 465 LEU D 18 REMARK 465 GLY D 19 REMARK 465 GLN D 20 REMARK 465 PRO D 21 REMARK 465 SER D 22 REMARK 465 VAL D 23 REMARK 465 VAL D 24 REMARK 465 GLU D 25 REMARK 465 GLU D 26 REMARK 465 PRO D 27 REMARK 465 GLY D 28 REMARK 465 SER D 38 REMARK 465 GLY D 39 REMARK 465 ASN D 40 REMARK 465 ASN D 41 REMARK 465 THR D 42 REMARK 465 LEU D 47 REMARK 465 TYR D 48 REMARK 465 ALA D 49 REMARK 465 PRO D 50 REMARK 465 GLY D 51 REMARK 465 LYS D 52 REMARK 465 GLU D 53 REMARK 465 ASP D 54 REMARK 465 CYS D 55 REMARK 465 PRO D 56 REMARK 465 LYS D 57 REMARK 465 GLU D 58 REMARK 465 ARG D 59 REMARK 465 LEU D 146 REMARK 465 PRO D 147 REMARK 465 THR D 148 REMARK 465 GLU D 149 REMARK 465 GLN D 150 REMARK 465 TYR D 151 REMARK 465 GLY D 152 REMARK 465 HIS D 153 REMARK 465 LEU D 154 REMARK 465 THR D 155 REMARK 465 VAL D 156 REMARK 465 ILE D 157 REMARK 465 PHE D 158 REMARK 465 LEU D 159 REMARK 465 VAL D 160 REMARK 465 MET D 161 REMARK 465 ALA D 162 REMARK 465 ALA D 163 REMARK 465 CYS D 164 REMARK 465 ILE D 165 REMARK 465 PHE D 166 REMARK 465 PHE D 167 REMARK 465 LEU D 168 REMARK 465 THR D 169 REMARK 465 THR D 170 REMARK 465 VAL D 171 REMARK 465 GLN D 172 REMARK 465 LEU D 173 REMARK 465 GLY D 174 REMARK 465 LEU D 175 REMARK 465 HIS D 176 REMARK 465 ILE D 177 REMARK 465 TRP D 178 REMARK 465 GLN D 179 REMARK 465 LEU D 180 REMARK 465 ARG D 181 REMARK 465 ARG D 182 REMARK 465 GLN D 183 REMARK 465 HIS D 184 REMARK 465 MET D 185 REMARK 465 CYS D 186 REMARK 465 PRO D 187 REMARK 465 ARG D 188 REMARK 465 GLU D 189 REMARK 465 THR D 190 REMARK 465 GLN D 191 REMARK 465 PRO D 192 REMARK 465 PHE D 193 REMARK 465 ALA D 194 REMARK 465 GLU D 195 REMARK 465 VAL D 196 REMARK 465 GLN D 197 REMARK 465 LEU D 198 REMARK 465 SER D 199 REMARK 465 ALA D 200 REMARK 465 GLU D 201 REMARK 465 ASP D 202 REMARK 465 ALA D 203 REMARK 465 CYS D 204 REMARK 465 SER D 205 REMARK 465 PHE D 206 REMARK 465 GLN D 207 REMARK 465 PHE D 208 REMARK 465 PRO D 209 REMARK 465 GLU D 210 REMARK 465 GLU D 211 REMARK 465 GLU D 212 REMARK 465 ARG D 213 REMARK 465 GLY D 214 REMARK 465 GLU D 215 REMARK 465 GLN D 216 REMARK 465 THR D 217 REMARK 465 GLU D 218 REMARK 465 GLU D 219 REMARK 465 LYS D 220 REMARK 465 CYS D 221 REMARK 465 HIS D 222 REMARK 465 LEU D 223 REMARK 465 GLY D 224 REMARK 465 GLY D 225 REMARK 465 ARG D 226 REMARK 465 TRP D 227 REMARK 465 PRO D 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 117 10.69 -141.00 REMARK 500 ASP A 126 58.81 -95.77 REMARK 500 LEU B 169 76.46 -111.78 REMARK 500 ASN C 40 149.55 -171.01 REMARK 500 ASN C 41 93.08 -69.97 REMARK 500 THR C 42 -78.98 -114.51 REMARK 500 ARG C 43 93.26 -164.85 REMARK 500 CYS C 44 -167.95 -179.70 REMARK 500 CYS C 82 73.34 54.86 REMARK 500 GLN C 83 150.85 -41.55 REMARK 500 CYS D 44 -168.25 -171.96 REMARK 500 GLU D 66 -1.05 69.42 REMARK 500 CYS D 82 76.87 55.90 REMARK 500 GLN D 83 144.26 -35.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 7E57 A 1 173 UNP Q7TS55 TNF18_MOUSE 1 173 DBREF 7E57 B 1 173 UNP Q7TS55 TNF18_MOUSE 1 173 DBREF 7E57 C 1 228 UNP O35714 TNR18_MOUSE 1 228 DBREF 7E57 D 1 228 UNP O35714 TNR18_MOUSE 1 228 SEQRES 1 A 173 MET GLU GLU MET PRO LEU ARG GLU SER SER PRO GLN ARG SEQRES 2 A 173 ALA GLU ARG CYS LYS LYS SER TRP LEU LEU CYS ILE VAL SEQRES 3 A 173 ALA LEU LEU LEU MET LEU LEU CYS SER LEU GLY THR LEU SEQRES 4 A 173 ILE TYR THR SER LEU LYS PRO THR ALA ILE GLU SER CYS SEQRES 5 A 173 MET VAL LYS PHE GLU LEU SER SER SER LYS TRP HIS MET SEQRES 6 A 173 THR SER PRO LYS PRO HIS CYS VAL ASN THR THR SER ASP SEQRES 7 A 173 GLY LYS LEU LYS ILE LEU GLN SER GLY THR TYR LEU ILE SEQRES 8 A 173 TYR GLY GLN VAL ILE PRO VAL ASP LYS LYS TYR ILE LYS SEQRES 9 A 173 ASP ASN ALA PRO PHE VAL VAL GLN ILE TYR LYS LYS ASN SEQRES 10 A 173 ASP VAL LEU GLN THR LEU MET ASN ASP PHE GLN ILE LEU SEQRES 11 A 173 PRO ILE GLY GLY VAL TYR GLU LEU HIS ALA GLY ASP ASN SEQRES 12 A 173 ILE TYR LEU LYS PHE ASN SER LYS ASP HIS ILE GLN LYS SEQRES 13 A 173 THR ASN THR TYR TRP GLY ILE ILE LEU MET PRO ASP LEU SEQRES 14 A 173 PRO PHE ILE SER SEQRES 1 B 173 MET GLU GLU MET PRO LEU ARG GLU SER SER PRO GLN ARG SEQRES 2 B 173 ALA GLU ARG CYS LYS LYS SER TRP LEU LEU CYS ILE VAL SEQRES 3 B 173 ALA LEU LEU LEU MET LEU LEU CYS SER LEU GLY THR LEU SEQRES 4 B 173 ILE TYR THR SER LEU LYS PRO THR ALA ILE GLU SER CYS SEQRES 5 B 173 MET VAL LYS PHE GLU LEU SER SER SER LYS TRP HIS MET SEQRES 6 B 173 THR SER PRO LYS PRO HIS CYS VAL ASN THR THR SER ASP SEQRES 7 B 173 GLY LYS LEU LYS ILE LEU GLN SER GLY THR TYR LEU ILE SEQRES 8 B 173 TYR GLY GLN VAL ILE PRO VAL ASP LYS LYS TYR ILE LYS SEQRES 9 B 173 ASP ASN ALA PRO PHE VAL VAL GLN ILE TYR LYS LYS ASN SEQRES 10 B 173 ASP VAL LEU GLN THR LEU MET ASN ASP PHE GLN ILE LEU SEQRES 11 B 173 PRO ILE GLY GLY VAL TYR GLU LEU HIS ALA GLY ASP ASN SEQRES 12 B 173 ILE TYR LEU LYS PHE ASN SER LYS ASP HIS ILE GLN LYS SEQRES 13 B 173 THR ASN THR TYR TRP GLY ILE ILE LEU MET PRO ASP LEU SEQRES 14 B 173 PRO PHE ILE SER SEQRES 1 C 228 MET GLY ALA TRP ALA MET LEU TYR GLY VAL SER MET LEU SEQRES 2 C 228 CYS VAL LEU ASP LEU GLY GLN PRO SER VAL VAL GLU GLU SEQRES 3 C 228 PRO GLY CYS GLY PRO GLY LYS VAL GLN ASN GLY SER GLY SEQRES 4 C 228 ASN ASN THR ARG CYS CYS SER LEU TYR ALA PRO GLY LYS SEQRES 5 C 228 GLU ASP CYS PRO LYS GLU ARG CYS ILE CYS VAL THR PRO SEQRES 6 C 228 GLU TYR HIS CYS GLY ASP PRO GLN CYS LYS ILE CYS LYS SEQRES 7 C 228 HIS TYR PRO CYS GLN PRO GLY GLN ARG VAL GLU SER GLN SEQRES 8 C 228 GLY ASP ILE VAL PHE GLY PHE ARG CYS VAL ALA CYS ALA SEQRES 9 C 228 MET GLY THR PHE SER ALA GLY ARG ASP GLY HIS CYS ARG SEQRES 10 C 228 LEU TRP THR ASN CYS SER GLN PHE GLY PHE LEU THR MET SEQRES 11 C 228 PHE PRO GLY ASN LYS THR HIS ASN ALA VAL CYS ILE PRO SEQRES 12 C 228 GLU PRO LEU PRO THR GLU GLN TYR GLY HIS LEU THR VAL SEQRES 13 C 228 ILE PHE LEU VAL MET ALA ALA CYS ILE PHE PHE LEU THR SEQRES 14 C 228 THR VAL GLN LEU GLY LEU HIS ILE TRP GLN LEU ARG ARG SEQRES 15 C 228 GLN HIS MET CYS PRO ARG GLU THR GLN PRO PHE ALA GLU SEQRES 16 C 228 VAL GLN LEU SER ALA GLU ASP ALA CYS SER PHE GLN PHE SEQRES 17 C 228 PRO GLU GLU GLU ARG GLY GLU GLN THR GLU GLU LYS CYS SEQRES 18 C 228 HIS LEU GLY GLY ARG TRP PRO SEQRES 1 D 228 MET GLY ALA TRP ALA MET LEU TYR GLY VAL SER MET LEU SEQRES 2 D 228 CYS VAL LEU ASP LEU GLY GLN PRO SER VAL VAL GLU GLU SEQRES 3 D 228 PRO GLY CYS GLY PRO GLY LYS VAL GLN ASN GLY SER GLY SEQRES 4 D 228 ASN ASN THR ARG CYS CYS SER LEU TYR ALA PRO GLY LYS SEQRES 5 D 228 GLU ASP CYS PRO LYS GLU ARG CYS ILE CYS VAL THR PRO SEQRES 6 D 228 GLU TYR HIS CYS GLY ASP PRO GLN CYS LYS ILE CYS LYS SEQRES 7 D 228 HIS TYR PRO CYS GLN PRO GLY GLN ARG VAL GLU SER GLN SEQRES 8 D 228 GLY ASP ILE VAL PHE GLY PHE ARG CYS VAL ALA CYS ALA SEQRES 9 D 228 MET GLY THR PHE SER ALA GLY ARG ASP GLY HIS CYS ARG SEQRES 10 D 228 LEU TRP THR ASN CYS SER GLN PHE GLY PHE LEU THR MET SEQRES 11 D 228 PHE PRO GLY ASN LYS THR HIS ASN ALA VAL CYS ILE PRO SEQRES 12 D 228 GLU PRO LEU PRO THR GLU GLN TYR GLY HIS LEU THR VAL SEQRES 13 D 228 ILE PHE LEU VAL MET ALA ALA CYS ILE PHE PHE LEU THR SEQRES 14 D 228 THR VAL GLN LEU GLY LEU HIS ILE TRP GLN LEU ARG ARG SEQRES 15 D 228 GLN HIS MET CYS PRO ARG GLU THR GLN PRO PHE ALA GLU SEQRES 16 D 228 VAL GLN LEU SER ALA GLU ASP ALA CYS SER PHE GLN PHE SEQRES 17 D 228 PRO GLU GLU GLU ARG GLY GLU GLN THR GLU GLU LYS CYS SEQRES 18 D 228 HIS LEU GLY GLY ARG TRP PRO HET NAG F 1 14 HET FUC F 2 10 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 5 FUC 2(C6 H12 O5) HELIX 1 AA1 ASP A 99 ILE A 103 5 5 HELIX 2 AA2 SER A 150 ILE A 154 5 5 HELIX 3 AA3 ASP B 99 ILE B 103 5 5 HELIX 4 AA4 ASN C 121 GLY C 126 5 6 HELIX 5 AA5 CYS D 122 GLY D 126 5 5 SHEET 1 AA1 6 LEU A 130 LEU A 138 0 SHEET 2 AA1 6 GLY A 87 VAL A 95 -1 N VAL A 95 O LEU A 130 SHEET 3 AA1 6 TYR A 160 LEU A 165 -1 O GLY A 162 N TYR A 92 SHEET 4 AA1 6 MET A 53 GLU A 57 -1 N PHE A 56 O TRP A 161 SHEET 5 AA1 6 LYS A 62 MET A 65 -1 O HIS A 64 N LYS A 55 SHEET 6 AA1 6 ILE B 172 SER B 173 -1 O SER B 173 N TRP A 63 SHEET 1 AA2 5 VAL A 73 THR A 75 0 SHEET 2 AA2 5 LEU A 81 ILE A 83 -1 O LYS A 82 N ASN A 74 SHEET 3 AA2 5 ASN A 143 PHE A 148 -1 O ILE A 144 N LEU A 81 SHEET 4 AA2 5 PHE A 109 TYR A 114 -1 N TYR A 114 O TYR A 145 SHEET 5 AA2 5 VAL A 119 ASN A 125 -1 O LEU A 123 N VAL A 111 SHEET 1 AA3 5 LYS B 62 MET B 65 0 SHEET 2 AA3 5 MET B 53 GLU B 57 -1 N GLU B 57 O LYS B 62 SHEET 3 AA3 5 TYR B 160 LEU B 165 -1 O TRP B 161 N PHE B 56 SHEET 4 AA3 5 GLY B 87 VAL B 95 -1 N TYR B 92 O GLY B 162 SHEET 5 AA3 5 LEU B 130 PRO B 131 -1 O LEU B 130 N VAL B 95 SHEET 1 AA4 5 LYS B 62 MET B 65 0 SHEET 2 AA4 5 MET B 53 GLU B 57 -1 N GLU B 57 O LYS B 62 SHEET 3 AA4 5 TYR B 160 LEU B 165 -1 O TRP B 161 N PHE B 56 SHEET 4 AA4 5 GLY B 87 VAL B 95 -1 N TYR B 92 O GLY B 162 SHEET 5 AA4 5 GLY B 134 LEU B 138 -1 O GLY B 134 N ILE B 91 SHEET 1 AA5 4 LEU B 81 LYS B 82 0 SHEET 2 AA5 4 ASN B 143 PHE B 148 -1 O ILE B 144 N LEU B 81 SHEET 3 AA5 4 PHE B 109 TYR B 114 -1 N TYR B 114 O TYR B 145 SHEET 4 AA5 4 VAL B 119 ASN B 125 -1 O LEU B 123 N VAL B 111 SHEET 1 AA6 2 SER C 46 LEU C 47 0 SHEET 2 AA6 2 GLU C 58 ARG C 59 -1 O ARG C 59 N SER C 46 SHEET 1 AA7 2 TYR C 67 CYS C 69 0 SHEET 2 AA7 2 CYS C 77 HIS C 79 -1 O LYS C 78 N HIS C 68 SHEET 1 AA8 2 GLN C 86 SER C 90 0 SHEET 2 AA8 2 PHE C 98 ALA C 102 -1 O VAL C 101 N ARG C 87 SHEET 1 AA9 2 THR C 107 PHE C 108 0 SHEET 2 AA9 2 ARG C 117 LEU C 118 -1 O ARG C 117 N PHE C 108 SHEET 1 AB1 2 LEU C 128 PHE C 131 0 SHEET 2 AB1 2 VAL C 140 ILE C 142 -1 O ILE C 142 N LEU C 128 SHEET 1 AB2 2 TYR D 67 CYS D 69 0 SHEET 2 AB2 2 CYS D 77 HIS D 79 -1 O LYS D 78 N HIS D 68 SHEET 1 AB3 2 GLN D 86 ARG D 87 0 SHEET 2 AB3 2 VAL D 101 ALA D 102 -1 O VAL D 101 N ARG D 87 SHEET 1 AB4 2 THR D 107 PHE D 108 0 SHEET 2 AB4 2 ARG D 117 LEU D 118 -1 O ARG D 117 N PHE D 108 SHEET 1 AB5 2 LEU D 128 PHE D 131 0 SHEET 2 AB5 2 VAL D 140 ILE D 142 -1 O VAL D 140 N MET D 130 SSBOND 1 CYS A 52 CYS A 72 1555 1555 2.03 SSBOND 2 CYS B 52 CYS B 72 1555 1555 2.03 SSBOND 3 CYS C 29 CYS C 44 1555 1555 2.04 SSBOND 4 CYS C 45 CYS C 60 1555 1555 2.03 SSBOND 5 CYS C 62 CYS C 77 1555 1555 2.03 SSBOND 6 CYS C 69 CYS C 74 1555 1555 2.03 SSBOND 7 CYS C 82 CYS C 100 1555 1555 2.03 SSBOND 8 CYS C 103 CYS C 116 1555 1555 2.03 SSBOND 9 CYS C 122 CYS C 141 1555 1555 2.03 SSBOND 10 CYS D 29 CYS D 44 1555 1555 2.03 SSBOND 11 CYS D 45 CYS D 60 1555 1555 2.03 SSBOND 12 CYS D 62 CYS D 77 1555 1555 2.03 SSBOND 13 CYS D 69 CYS D 74 1555 1555 2.03 SSBOND 14 CYS D 82 CYS D 100 1555 1555 2.03 SSBOND 15 CYS D 103 CYS D 116 1555 1555 2.03 SSBOND 16 CYS D 122 CYS D 141 1555 1555 2.03 LINK ND2 ASN C 134 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN D 134 C1 NAG F 1 1555 1555 1.45 LINK O6 NAG F 1 C1 FUC F 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.45 CRYST1 80.386 62.564 85.756 90.00 116.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012440 0.000000 0.006129 0.00000 SCALE2 0.000000 0.015984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012999 0.00000