HEADER DNA 19-FEB-21 7E5P TITLE APTAMER ENHANCING PEROXIDASE ACTIVITY OF MYOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*GP*GP*G)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DNA APTAMER SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA APTAMER PARALLEL G-QUADRUPLEX MYOGLOBIN PEROXIDASE ACTIVITY KEYWDS 2 ENHANCEMENT, DNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.TSUKAKOSHI,A.MATSUGAMI,K.KHUNATHAI,M.KANAZASHI,Y.YAMAGISHI, AUTHOR 2 K.NAKAMA,D.OSHIKAWA,F.HAYASHI,H.KUNO,K.IKEBUKURO REVDAT 3 14-JUN-23 7E5P 1 REMARK REVDAT 2 07-JUL-21 7E5P 1 JRNL REVDAT 1 16-JUN-21 7E5P 0 JRNL AUTH K.TSUKAKOSHI,Y.YAMAGISHI,M.KANAZASHI,K.NAKAMA,D.OSHIKAWA, JRNL AUTH 2 N.SAVORY,A.MATSUGAMI,F.HAYASHI,J.LEE,T.SAITO,K.SODE, JRNL AUTH 3 K.KHUNATHAI,H.KUNO,K.IKEBUKURO JRNL TITL G-QUADRUPLEX-FORMING APTAMER ENHANCES THE PEROXIDASE JRNL TITL 2 ACTIVITY OF MYOGLOBIN AGAINST LUMINOL. JRNL REF NUCLEIC ACIDS RES. V. 49 6069 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34095949 JRNL DOI 10.1093/NAR/GKAB388 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.48 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020446. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM DNA (5' REMARK 210 -D(*(GUA)P*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3'), 10 REMARK 210 MM POTASSIUM PHOSPHATE BUFFER PH 6.5, 100 UM DSS, 100% D2O; 1 MM REMARK 210 DNA (5'-D(*(GUA)P*GP*GP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3' REMARK 210 ), 10 MM POTASSIUM PHOSPHATE BUFFER PH 6.5, 100 UM NA DSS, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY 500MS; 2D 1H-1H REMARK 210 NOESY 50MS; 2D 1H-1H TOCSY 120MS; REMARK 210 2D DQF-COSY; 2D 1H-13C HSQC; 2D REMARK 210 1H-1H NOESY 250MS; 2D JR-HMBC; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY 3.114, TOPSPIN REMARK 210 3.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36411 RELATED DB: BMRB REMARK 900 APTAMER ENHANCING PEROXIDASE ACTIVITY OF MYOGLOBIN DBREF 7E5P A 1 16 PDB 7E5P 7E5P 1 16 SEQRES 1 A 16 DG DG DG DT DG DG DG DT DT DG DG DG DA SEQRES 2 A 16 DG DG DG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1