HEADER OXIDOREDUCTASE 03-MAR-21 7E8Z TITLE CRYSTAL STRUCTURE OF THE HUMAN FAT MASS AND OBESITY ASSOCIATED PROTEIN TITLE 2 (FTO) IN COMPLEX WITH SS81 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN,U6 SMALL NUCLEAR RNA COMPND 5 (2'-O-METHYLADENOSINE-N(6)-)-DEMETHYLASE FTO,U6 SMALL NUCLEAR RNA COMPND 6 N(6)-METHYLADENOSINE-DEMETHYLASE FTO,MRNA (2'-O-METHYLADENOSINE-N(6)- COMPND 7 )-DEMETHYLASE FTO,M6A(M)-DEMETHYLASE FTO,MRNA N(6)-METHYLADENOSINE COMPND 8 DEMETHYLASE FTO,TRNA N1-METHYL ADENINE DEMETHYLASE FTO; COMPND 9 EC: 1.14.11.-,1.14.11.53; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTO, KIAA1752; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOUBLE-STRANDED BETA HELIX, 2OG AND FE(II)-DEPENDENT OXYGENASE, RNA KEYWDS 2 DEMETHYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.Y.TAM,Y.M.NG,S.SHISHODIA,M.A.MCDONOUGH,C.J.SCHOFIELD,W.S.AIK REVDAT 3 29-NOV-23 7E8Z 1 REMARK REVDAT 2 02-FEB-22 7E8Z 1 JRNL REVDAT 1 13-OCT-21 7E8Z 0 JRNL AUTH S.SHISHODIA,M.DEMETRIADES,D.ZHANG,N.Y.TAM,P.MAHESWARAN, JRNL AUTH 2 C.CLUNIE-O'CONNOR,A.TUMBER,I.K.H.LEUNG,Y.M.NG,T.M.LEISSING, JRNL AUTH 3 A.H.EL-SAGHEER,E.SALAH,T.BROWN,W.S.AIK,M.A.MCDONOUGH, JRNL AUTH 4 C.J.SCHOFIELD JRNL TITL STRUCTURE-BASED DESIGN OF SELECTIVE FAT MASS AND OBESITY JRNL TITL 2 ASSOCIATED PROTEIN (FTO) INHIBITORS. JRNL REF J.MED.CHEM. V. 64 16609 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34762429 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01204 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.590 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0800 - 4.8700 1.00 2816 131 0.1634 0.1884 REMARK 3 2 4.8700 - 3.8700 1.00 2879 84 0.1638 0.2160 REMARK 3 3 3.8700 - 3.3800 1.00 2822 120 0.1997 0.2242 REMARK 3 4 3.3800 - 3.0700 1.00 2778 174 0.2542 0.2923 REMARK 3 5 3.0700 - 2.8500 0.99 2782 168 0.2633 0.2977 REMARK 3 6 2.8500 - 2.6800 0.99 2793 103 0.2689 0.3405 REMARK 3 7 2.6800 - 2.5500 0.95 2621 157 0.3310 0.3315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9770 -33.8872 -35.8900 REMARK 3 T TENSOR REMARK 3 T11: 0.5168 T22: 0.4530 REMARK 3 T33: 0.6604 T12: -0.0562 REMARK 3 T13: -0.0045 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 6.0700 L22: 4.0631 REMARK 3 L33: 3.8201 L12: 0.9229 REMARK 3 L13: 2.7643 L23: 0.4616 REMARK 3 S TENSOR REMARK 3 S11: 0.1502 S12: 0.6819 S13: -0.8023 REMARK 3 S21: -0.2593 S22: 0.1313 S23: 0.2293 REMARK 3 S31: 0.3110 S32: 0.1698 S33: -0.3447 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7580 -27.7810 -31.7359 REMARK 3 T TENSOR REMARK 3 T11: 0.4393 T22: 0.7129 REMARK 3 T33: 0.6916 T12: -0.0382 REMARK 3 T13: -0.0388 T23: -0.1395 REMARK 3 L TENSOR REMARK 3 L11: 5.6988 L22: 7.6727 REMARK 3 L33: 4.3220 L12: 0.5544 REMARK 3 L13: 3.9089 L23: 0.3432 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: 1.1990 S13: -0.5429 REMARK 3 S21: -0.3132 S22: 0.2853 S23: -0.7577 REMARK 3 S31: 0.1461 S32: 0.8843 S33: -0.1618 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8403 -22.3468 -23.8812 REMARK 3 T TENSOR REMARK 3 T11: 0.4832 T22: 0.4602 REMARK 3 T33: 0.4690 T12: 0.0084 REMARK 3 T13: -0.0182 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 5.6698 L22: 2.3358 REMARK 3 L33: 1.6893 L12: 2.2553 REMARK 3 L13: 1.6351 L23: 0.7591 REMARK 3 S TENSOR REMARK 3 S11: 0.2357 S12: -0.0453 S13: -0.3098 REMARK 3 S21: 0.2180 S22: -0.0503 S23: -0.1488 REMARK 3 S31: 0.1907 S32: 0.1811 S33: -0.1714 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300020956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20599 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 71.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.180 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IE5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.5% PEG3350, 100 MM TRISODIUM REMARK 280 CITRATE PH 5.6, 4% TERT-BUTANOL, 1 MM NADH, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.14650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.07645 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.96700 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 71.14650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.07645 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.96700 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 71.14650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.07645 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.96700 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.15290 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.93400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 82.15290 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.93400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 82.15290 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.93400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 TYR A 214 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 VAL A 120 CG1 CG2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 SER A 123 OG REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 128 OG1 CG2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 194 CD CE NZ REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLN A 339 CG CD OE1 NE2 REMARK 470 ASP A 353 CG OD1 OD2 REMARK 470 ASN A 387 CG OD1 ND2 REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 408 CD CE NZ REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 468 CG CD OE1 NE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 GLU A 477 CG CD OE1 OE2 REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 ASP A 479 CG OD1 OD2 REMARK 470 ARG A 497 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 501 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 213 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 PRO A 213 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 82 75.03 -101.72 REMARK 500 PRO A 119 72.42 -68.50 REMARK 500 HIS A 127 -164.35 73.57 REMARK 500 THR A 128 -136.59 -121.67 REMARK 500 LEU A 298 -161.95 -79.41 REMARK 500 TRP A 378 -55.94 -124.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 ASP A 233 OD1 84.2 REMARK 620 3 HIS A 307 NE2 90.2 83.3 REMARK 620 4 HZX A 602 O4 106.8 166.5 104.2 REMARK 620 5 HZX A 602 N1 89.1 86.3 169.6 86.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QHO RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CCO010 DBREF 7E8Z A 32 505 UNP Q9C0B1 FTO_HUMAN 32 505 SEQADV 7E8Z MET A 11 UNP Q9C0B1 INITIATING METHIONINE SEQADV 7E8Z GLY A 12 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z SER A 13 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z SER A 14 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 7E8Z MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQRES 1 A 495 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 495 LEU VAL PRO ARG GLY SER HIS MET THR PRO LYS ASP ASP SEQRES 3 A 495 GLU PHE TYR GLN GLN TRP GLN LEU LYS TYR PRO LYS LEU SEQRES 4 A 495 ILE LEU ARG GLU ALA SER SER VAL SER GLU GLU LEU HIS SEQRES 5 A 495 LYS GLU VAL GLN GLU ALA PHE LEU THR LEU HIS LYS HIS SEQRES 6 A 495 GLY CYS LEU PHE ARG ASP LEU VAL ARG ILE GLN GLY LYS SEQRES 7 A 495 ASP LEU LEU THR PRO VAL SER ARG ILE LEU ILE GLY ASN SEQRES 8 A 495 PRO GLY CYS THR TYR LYS TYR LEU ASN THR ARG LEU PHE SEQRES 9 A 495 THR VAL PRO TRP PRO VAL LYS GLY SER ASN ILE LYS HIS SEQRES 10 A 495 THR GLU ALA GLU ILE ALA ALA ALA CYS GLU THR PHE LEU SEQRES 11 A 495 LYS LEU ASN ASP TYR LEU GLN ILE GLU THR ILE GLN ALA SEQRES 12 A 495 LEU GLU GLU LEU ALA ALA LYS GLU LYS ALA ASN GLU ASP SEQRES 13 A 495 ALA VAL PRO LEU CYS MET SER ALA ASP PHE PRO ARG VAL SEQRES 14 A 495 GLY MET GLY SER SER TYR ASN GLY GLN ASP GLU VAL ASP SEQRES 15 A 495 ILE LYS SER ARG ALA ALA TYR ASN VAL THR LEU LEU ASN SEQRES 16 A 495 PHE MET ASP PRO GLN LYS MET PRO TYR LEU LYS GLU GLU SEQRES 17 A 495 PRO TYR PHE GLY MET GLY LYS MET ALA VAL SER TRP HIS SEQRES 18 A 495 HIS ASP GLU ASN LEU VAL ASP ARG SER ALA VAL ALA VAL SEQRES 19 A 495 TYR SER TYR SER CYS GLU GLY PRO GLU GLU GLU SER GLU SEQRES 20 A 495 ASP ASP SER HIS LEU GLU GLY ARG ASP PRO ASP ILE TRP SEQRES 21 A 495 HIS VAL GLY PHE LYS ILE SER TRP ASP ILE GLU THR PRO SEQRES 22 A 495 GLY LEU ALA ILE PRO LEU HIS GLN GLY ASP CYS TYR PHE SEQRES 23 A 495 MET LEU ASP ASP LEU ASN ALA THR HIS GLN HIS CYS VAL SEQRES 24 A 495 LEU ALA GLY SER GLN PRO ARG PHE SER SER THR HIS ARG SEQRES 25 A 495 VAL ALA GLU CYS SER THR GLY THR LEU ASP TYR ILE LEU SEQRES 26 A 495 GLN ARG CYS GLN LEU ALA LEU GLN ASN VAL CYS ASP ASP SEQRES 27 A 495 VAL ASP ASN ASP ASP VAL SER LEU LYS SER PHE GLU PRO SEQRES 28 A 495 ALA VAL LEU LYS GLN GLY GLU GLU ILE HIS ASN GLU VAL SEQRES 29 A 495 GLU PHE GLU TRP LEU ARG GLN PHE TRP PHE GLN GLY ASN SEQRES 30 A 495 ARG TYR ARG LYS CYS THR ASP TRP TRP CYS GLN PRO MET SEQRES 31 A 495 ALA GLN LEU GLU ALA LEU TRP LYS LYS MET GLU GLY VAL SEQRES 32 A 495 THR ASN ALA VAL LEU HIS GLU VAL LYS ARG GLU GLY LEU SEQRES 33 A 495 PRO VAL GLU GLN ARG ASN GLU ILE LEU THR ALA ILE LEU SEQRES 34 A 495 ALA SER LEU THR ALA ARG GLN ASN LEU ARG ARG GLU TRP SEQRES 35 A 495 HIS ALA ARG CYS GLN SER ARG ILE ALA ARG THR LEU PRO SEQRES 36 A 495 ALA ASP GLN LYS PRO GLU CYS ARG PRO TYR TRP GLU LYS SEQRES 37 A 495 ASP ASP ALA SER MET PRO LEU PRO PHE ASP LEU THR ASP SEQRES 38 A 495 ILE VAL SER GLU LEU ARG GLY GLN LEU LEU GLU ALA LYS SEQRES 39 A 495 PRO HET ZN A 601 1 HET HZX A 602 24 HETNAM ZN ZINC ION HETNAM HZX 2-[[6-[(4-NITROPHENYL)AMINO]-3-OXIDANYL-PYRIDIN-2- HETNAM 2 HZX YL]CARBONYLAMINO]ETHANOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 HZX C14 H12 N4 O6 FORMUL 4 HOH *12(H2 O) HELIX 1 AA1 ASP A 35 TYR A 46 1 12 HELIX 2 AA2 GLU A 53 VAL A 57 5 5 HELIX 3 AA3 SER A 58 HIS A 75 1 18 HELIX 4 AA4 GLU A 129 ASN A 164 1 36 HELIX 5 AA5 GLU A 190 ALA A 197 1 8 HELIX 6 AA6 ASP A 208 MET A 212 5 5 HELIX 7 AA7 ASP A 300 THR A 304 1 5 HELIX 8 AA8 THR A 330 LEU A 342 1 13 HELIX 9 AA9 GLN A 343 VAL A 345 5 3 HELIX 10 AB1 GLU A 360 TRP A 378 1 19 HELIX 11 AB2 TRP A 378 GLN A 385 1 8 HELIX 12 AB3 ARG A 388 CYS A 392 5 5 HELIX 13 AB4 TRP A 396 LYS A 422 1 27 HELIX 14 AB5 PRO A 427 CYS A 456 1 30 HELIX 15 AB6 SER A 458 THR A 463 1 6 HELIX 16 AB7 LEU A 464 LYS A 469 5 6 HELIX 17 AB8 LEU A 489 ALA A 503 1 15 SHEET 1 AA1 6 HIS A 30 MET A 31 0 SHEET 2 AA1 6 GLY A 284 LEU A 289 1 O GLY A 284 N MET A 31 SHEET 3 AA1 6 TRP A 270 ILE A 276 -1 N TRP A 270 O LEU A 289 SHEET 4 AA1 6 HIS A 305 LEU A 310 -1 O LEU A 310 N HIS A 271 SHEET 5 AA1 6 LYS A 225 HIS A 231 -1 N ALA A 227 O VAL A 309 SHEET 6 AA1 6 LYS A 216 GLU A 217 -1 N LYS A 216 O MET A 226 SHEET 1 AA2 7 LEU A 49 ARG A 52 0 SHEET 2 AA2 7 ASP A 293 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AA2 7 VAL A 242 SER A 248 -1 N SER A 246 O ASP A 293 SHEET 4 AA2 7 ARG A 316 ARG A 322 -1 O HIS A 321 N ALA A 243 SHEET 5 AA2 7 VAL A 201 MET A 207 -1 N LEU A 203 O THR A 320 SHEET 6 AA2 7 LYS A 88 GLY A 100 -1 N ILE A 99 O THR A 202 SHEET 7 AA2 7 PHE A 79 ILE A 85 -1 N PHE A 79 O ARG A 96 SHEET 1 AA3 7 LEU A 49 ARG A 52 0 SHEET 2 AA3 7 ASP A 293 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AA3 7 VAL A 242 SER A 248 -1 N SER A 246 O ASP A 293 SHEET 4 AA3 7 ARG A 316 ARG A 322 -1 O HIS A 321 N ALA A 243 SHEET 5 AA3 7 VAL A 201 MET A 207 -1 N LEU A 203 O THR A 320 SHEET 6 AA3 7 LYS A 88 GLY A 100 -1 N ILE A 99 O THR A 202 SHEET 7 AA3 7 VAL A 116 PRO A 117 1 O VAL A 116 N LEU A 98 SHEET 1 AA4 2 THR A 105 TYR A 108 0 SHEET 2 AA4 2 THR A 111 PHE A 114 -1 O THR A 111 N TYR A 108 LINK NE2 HIS A 231 ZN ZN A 601 1555 1555 2.30 LINK OD1 ASP A 233 ZN ZN A 601 1555 1555 2.15 LINK NE2 HIS A 307 ZN ZN A 601 1555 1555 2.30 LINK ZN ZN A 601 O4 HZX A 602 1555 1555 2.20 LINK ZN ZN A 601 N1 HZX A 602 1555 1555 2.22 CISPEP 1 ARG A 473 PRO A 474 0 -1.29 CRYST1 142.293 142.293 83.901 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007028 0.004057 0.000000 0.00000 SCALE2 0.000000 0.008115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011919 0.00000