HEADER TRANSCRIPTION 03-MAR-21 7E92 TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE RESPONSE REGULATOR TITLE 2 VBRR FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING RESPONSE REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: RESPONSE REGULATOR,RESPONSE REGULATOR TRANSCRIPTION FACTOR, COMPND 6 TRANSCRIPTIONAL REGULATOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: ACS84_09205, C9I78_18460, CA163_10520, CGH73_12770, SOURCE 5 D5E78_24805, F0L89_03250, F0L99_22745, WR32_19050; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTIONAL REGULATION, DNA-BINDING DOMAIN, RESPONSE REGULATOR, KEYWDS 2 VBRR, VIBRIO PARAHAEMOLYTICUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.CHO,S.I.YOON REVDAT 3 27-MAR-24 7E92 1 REMARK REVDAT 2 19-MAY-21 7E92 1 REMARK REVDAT 1 28-APR-21 7E92 0 JRNL AUTH S.Y.CHO,S.I.YOON JRNL TITL STRUCTURAL ANALYSIS OF THE ACTIVATION AND DNA INTERACTIONS JRNL TITL 2 OF THE RESPONSE REGULATOR VBRR FROM VIBRIO PARAHAEMOLYTICUS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 555 102 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 33813268 JRNL DOI 10.1016/J.BBRC.2021.03.114 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.2696 - 2.5957 1.00 2726 150 0.2066 0.2498 REMARK 3 2 2.5957 - 2.2677 1.00 2692 148 0.2018 0.2484 REMARK 3 3 2.2677 - 2.0605 1.00 2672 133 0.1939 0.2831 REMARK 3 4 2.0605 - 1.9128 1.00 2684 136 0.2124 0.2849 REMARK 3 5 1.9128 - 1.8000 1.00 2669 128 0.2302 0.2638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1544 REMARK 3 ANGLE : 0.728 2090 REMARK 3 CHIRALITY : 0.049 250 REMARK 3 PLANARITY : 0.004 262 REMARK 3 DIHEDRAL : 17.187 921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6354 -2.8763 -33.8326 REMARK 3 T TENSOR REMARK 3 T11: 0.4432 T22: 0.2678 REMARK 3 T33: 0.3519 T12: 0.0412 REMARK 3 T13: -0.0602 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 6.8356 L22: 4.7071 REMARK 3 L33: 6.4855 L12: -2.0365 REMARK 3 L13: 2.7149 L23: -0.7655 REMARK 3 S TENSOR REMARK 3 S11: 0.7086 S12: 0.0925 S13: -0.7497 REMARK 3 S21: -1.0453 S22: -0.1112 S23: 0.6434 REMARK 3 S31: 0.7068 S32: 0.0792 S33: -0.4819 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7584 -3.1934 -30.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.2250 REMARK 3 T33: 0.2599 T12: 0.0596 REMARK 3 T13: 0.0107 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.2557 L22: 5.9553 REMARK 3 L33: 2.2750 L12: -0.5622 REMARK 3 L13: 0.0832 L23: -3.6195 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: -0.2293 S13: -0.3415 REMARK 3 S21: -0.0057 S22: 0.0895 S23: -0.0899 REMARK 3 S31: -0.1437 S32: -0.4078 S33: 0.0326 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8269 4.1834 -26.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.1172 REMARK 3 T33: 0.1300 T12: 0.0129 REMARK 3 T13: 0.0046 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 4.6400 L22: 4.6863 REMARK 3 L33: 5.7423 L12: -1.6377 REMARK 3 L13: 0.0021 L23: 0.4888 REMARK 3 S TENSOR REMARK 3 S11: -0.1209 S12: -0.1592 S13: -0.1901 REMARK 3 S21: -0.1386 S22: 0.0839 S23: -0.0836 REMARK 3 S31: 0.2701 S32: -0.1035 S33: 0.0190 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7000 8.5842 -15.6854 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.2566 REMARK 3 T33: 0.1843 T12: 0.0046 REMARK 3 T13: 0.0421 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 5.7746 L22: 3.9828 REMARK 3 L33: 7.2838 L12: 0.9270 REMARK 3 L13: 0.6700 L23: -5.1267 REMARK 3 S TENSOR REMARK 3 S11: -0.2502 S12: -0.1884 S13: -0.2032 REMARK 3 S21: -0.4086 S22: 0.1985 S23: 0.0047 REMARK 3 S31: 0.3698 S32: -0.7205 S33: 0.0262 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2084 6.8150 -6.8648 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.2337 REMARK 3 T33: 0.2835 T12: 0.0360 REMARK 3 T13: 0.0257 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 8.7464 L22: 5.3937 REMARK 3 L33: 6.9321 L12: 6.7306 REMARK 3 L13: 6.4293 L23: 5.6441 REMARK 3 S TENSOR REMARK 3 S11: 0.1548 S12: -0.1261 S13: -0.5540 REMARK 3 S21: 0.4829 S22: -0.0937 S23: -0.4554 REMARK 3 S31: 1.0234 S32: 0.3818 S33: -0.0451 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2527 17.3270 3.6873 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1854 REMARK 3 T33: 0.2087 T12: 0.0072 REMARK 3 T13: -0.0146 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 4.3078 L22: 6.9694 REMARK 3 L33: 4.0670 L12: -0.9913 REMARK 3 L13: -2.2050 L23: 4.8907 REMARK 3 S TENSOR REMARK 3 S11: 0.1502 S12: 0.1764 S13: -0.2020 REMARK 3 S21: 0.2983 S22: 0.0385 S23: -0.0927 REMARK 3 S31: 0.3519 S32: -0.4901 S33: -0.2219 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3298 27.6039 2.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.3724 REMARK 3 T33: 0.2919 T12: 0.1552 REMARK 3 T13: -0.0456 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.9986 L22: 4.3196 REMARK 3 L33: 6.6605 L12: 3.3364 REMARK 3 L13: -2.0602 L23: -1.3303 REMARK 3 S TENSOR REMARK 3 S11: -0.2094 S12: 0.1885 S13: 0.3733 REMARK 3 S21: -0.2718 S22: -0.0995 S23: 0.5692 REMARK 3 S31: -1.0153 S32: -0.7683 S33: 0.2528 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0492 32.9950 11.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.3506 T22: 0.2042 REMARK 3 T33: 0.2804 T12: 0.0251 REMARK 3 T13: -0.0440 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 9.1418 L22: 2.9126 REMARK 3 L33: 4.5971 L12: -5.0472 REMARK 3 L13: 0.0774 L23: 0.2561 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0494 S13: 0.4565 REMARK 3 S21: 0.3134 S22: -0.0851 S23: -0.4559 REMARK 3 S31: -0.3085 S32: 0.2740 S33: 0.0604 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1604 25.9248 13.7746 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.2663 REMARK 3 T33: 0.1923 T12: 0.0117 REMARK 3 T13: -0.0439 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 5.8701 L22: 5.5872 REMARK 3 L33: 2.6102 L12: -2.3640 REMARK 3 L13: -0.8628 L23: -0.4160 REMARK 3 S TENSOR REMARK 3 S11: -0.1847 S12: 0.3278 S13: 0.3367 REMARK 3 S21: 0.6212 S22: -0.0962 S23: -0.3300 REMARK 3 S31: 0.0954 S32: 0.3312 S33: 0.2930 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2588 23.4085 9.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.1785 REMARK 3 T33: 0.1532 T12: 0.0078 REMARK 3 T13: -0.0284 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 2.8040 L22: 6.2578 REMARK 3 L33: 2.3982 L12: -0.8300 REMARK 3 L13: 0.1828 L23: 0.0144 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: 0.0122 S13: -0.1051 REMARK 3 S21: 0.4805 S22: -0.0432 S23: -0.0302 REMARK 3 S31: -0.3150 S32: 0.1705 S33: 0.0462 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3062 31.4930 -3.1199 REMARK 3 T TENSOR REMARK 3 T11: 0.4893 T22: 0.2412 REMARK 3 T33: 0.2594 T12: 0.0629 REMARK 3 T13: -0.0131 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 6.0261 L22: 2.6460 REMARK 3 L33: 4.6559 L12: 3.8734 REMARK 3 L13: 5.2918 L23: 3.4490 REMARK 3 S TENSOR REMARK 3 S11: -0.2307 S12: 0.4229 S13: 0.2778 REMARK 3 S21: -1.0979 S22: 0.0087 S23: -0.2189 REMARK 3 S31: -1.3065 S32: 0.1925 S33: 0.3897 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3402 20.7750 -5.6048 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.2607 REMARK 3 T33: 0.1877 T12: -0.0299 REMARK 3 T13: 0.0321 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 6.1560 L22: 5.9313 REMARK 3 L33: 2.1795 L12: -2.7156 REMARK 3 L13: 0.4981 L23: 1.2825 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: -0.1664 S13: 0.5353 REMARK 3 S21: -0.3424 S22: 0.0470 S23: -0.3454 REMARK 3 S31: -0.5020 S32: 0.1005 S33: -0.1008 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5524 15.4830 -9.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2243 REMARK 3 T33: 0.2486 T12: -0.0476 REMARK 3 T13: 0.0290 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 6.7465 L22: 3.3320 REMARK 3 L33: 6.7616 L12: 3.8149 REMARK 3 L13: 5.5020 L23: 4.7470 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: 0.5243 S13: -0.1120 REMARK 3 S21: -0.4545 S22: 0.0805 S23: -0.8479 REMARK 3 S31: -0.6971 S32: 0.6845 S33: -0.2006 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8091 13.8900 -23.9532 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1551 REMARK 3 T33: 0.2200 T12: -0.0085 REMARK 3 T13: 0.0015 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 6.9541 L22: 5.5122 REMARK 3 L33: 4.1899 L12: -3.3535 REMARK 3 L13: -4.8672 L23: 3.9157 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.0449 S13: 0.0697 REMARK 3 S21: -0.3431 S22: -0.1354 S23: -0.3052 REMARK 3 S31: -0.4527 S32: 0.3943 S33: 0.0718 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5105 14.7189 -29.8761 REMARK 3 T TENSOR REMARK 3 T11: 0.4304 T22: 0.2430 REMARK 3 T33: 0.2268 T12: 0.0740 REMARK 3 T13: -0.0162 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.6171 L22: 9.0068 REMARK 3 L33: 9.4669 L12: -4.4069 REMARK 3 L13: -5.7326 L23: 6.1900 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.1317 S13: -0.0408 REMARK 3 S21: -0.2723 S22: -0.1675 S23: 0.5894 REMARK 3 S31: -0.7565 S32: -0.4006 S33: 0.2589 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6650 11.4485 -27.6096 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.2924 REMARK 3 T33: 0.2663 T12: 0.0905 REMARK 3 T13: -0.0125 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.0997 L22: 2.9229 REMARK 3 L33: 2.0511 L12: 3.4528 REMARK 3 L13: 2.5034 L23: 2.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -0.0384 S13: 0.3838 REMARK 3 S21: -0.2368 S22: 0.2131 S23: -0.2692 REMARK 3 S31: -0.2636 S32: -0.3497 S33: -0.0409 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-19; 01-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PAL/PLS; PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1); 11C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9794, 0.9796, 0.9717 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; PIXEL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, MES, PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.65750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.61200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.87900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.61200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.65750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.87900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 ALA A 116 REMARK 465 LYS A 117 REMARK 465 ASP A 118 REMARK 465 PRO A 119 REMARK 465 SER A 120 REMARK 465 ALA A 121 REMARK 465 ASP A 122 REMARK 465 GLN A 123 REMARK 465 ALA A 124 REMARK 465 ASN A 125 REMARK 465 GLY B 114 REMARK 465 SER B 115 REMARK 465 ALA B 116 REMARK 465 LYS B 117 REMARK 465 ASP B 118 REMARK 465 PRO B 119 REMARK 465 SER B 120 REMARK 465 ALA B 121 REMARK 465 ASP B 122 REMARK 465 GLN B 123 REMARK 465 ALA B 124 REMARK 465 ASN B 125 REMARK 465 ALA B 126 REMARK 465 ALA B 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 219 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 214 -63.59 -129.10 REMARK 500 VAL B 214 -64.38 -131.81 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7E92 A 120 220 UNP A0A0L8SKF9_VIBPH DBREF2 7E92 A A0A0L8SKF9 120 220 DBREF1 7E92 B 120 220 UNP A0A0L8SKF9_VIBPH DBREF2 7E92 B A0A0L8SKF9 120 220 SEQADV 7E92 GLY A 114 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 SER A 115 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 ALA A 116 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 LYS A 117 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 ASP A 118 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 PRO A 119 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 GLY B 114 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 SER B 115 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 ALA B 116 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 LYS B 117 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 ASP B 118 UNP A0A0L8SKF EXPRESSION TAG SEQADV 7E92 PRO B 119 UNP A0A0L8SKF EXPRESSION TAG SEQRES 1 A 107 GLY SER ALA LYS ASP PRO SER ALA ASP GLN ALA ASN ALA SEQRES 2 A 107 ASP LYS VAL MET THR LYS ASP LEU GLU ILE ASP ARG ALA SEQRES 3 A 107 THR ARG GLU VAL ILE PHE LYS GLY ASP LEU ILE THR LEU SEQRES 4 A 107 THR ARG THR GLU PHE ASP LEU LEU LEU PHE LEU ALA SER SEQRES 5 A 107 ASN LEU GLY ARG VAL PHE THR ARG ASP GLU LEU LEU ASP SEQRES 6 A 107 HIS VAL TRP GLY TYR ASN HIS PHE PRO THR THR ARG THR SEQRES 7 A 107 VAL ASP THR HIS VAL LEU GLN LEU ARG GLN LYS LEU PRO SEQRES 8 A 107 GLY LEU GLU ILE GLU THR LEU ARG GLY VAL GLY TYR LYS SEQRES 9 A 107 MET LYS ALA SEQRES 1 B 107 GLY SER ALA LYS ASP PRO SER ALA ASP GLN ALA ASN ALA SEQRES 2 B 107 ASP LYS VAL MET THR LYS ASP LEU GLU ILE ASP ARG ALA SEQRES 3 B 107 THR ARG GLU VAL ILE PHE LYS GLY ASP LEU ILE THR LEU SEQRES 4 B 107 THR ARG THR GLU PHE ASP LEU LEU LEU PHE LEU ALA SER SEQRES 5 B 107 ASN LEU GLY ARG VAL PHE THR ARG ASP GLU LEU LEU ASP SEQRES 6 B 107 HIS VAL TRP GLY TYR ASN HIS PHE PRO THR THR ARG THR SEQRES 7 B 107 VAL ASP THR HIS VAL LEU GLN LEU ARG GLN LYS LEU PRO SEQRES 8 B 107 GLY LEU GLU ILE GLU THR LEU ARG GLY VAL GLY TYR LYS SEQRES 9 B 107 MET LYS ALA FORMUL 3 HOH *83(H2 O) HELIX 1 AA1 THR A 153 SER A 165 1 13 HELIX 2 AA2 ARG A 173 GLY A 182 1 10 HELIX 3 AA3 THR A 188 LEU A 203 1 16 HELIX 4 AA4 THR B 153 SER B 165 1 13 HELIX 5 AA5 ARG B 173 GLY B 182 1 10 HELIX 6 AA6 THR B 188 LEU B 203 1 16 SHEET 1 AA1 4 LYS A 128 THR A 131 0 SHEET 2 AA1 4 LEU A 134 ASP A 137 -1 O ILE A 136 N VAL A 129 SHEET 3 AA1 4 GLU A 142 PHE A 145 -1 O ILE A 144 N GLU A 135 SHEET 4 AA1 4 ASP A 148 ILE A 150 -1 O ILE A 150 N VAL A 143 SHEET 1 AA2 3 PHE A 171 THR A 172 0 SHEET 2 AA2 3 GLY B 215 MET B 218 -1 O TYR B 216 N PHE A 171 SHEET 3 AA2 3 ILE B 208 LEU B 211 -1 N GLU B 209 O LYS B 217 SHEET 1 AA3 3 ILE A 208 LEU A 211 0 SHEET 2 AA3 3 GLY A 215 MET A 218 -1 O LYS A 217 N GLU A 209 SHEET 3 AA3 3 PHE B 171 THR B 172 -1 O PHE B 171 N TYR A 216 SHEET 1 AA4 4 LYS B 128 MET B 130 0 SHEET 2 AA4 4 LEU B 134 ASP B 137 -1 O ILE B 136 N VAL B 129 SHEET 3 AA4 4 GLU B 142 PHE B 145 -1 O ILE B 144 N GLU B 135 SHEET 4 AA4 4 ASP B 148 LEU B 149 -1 O ASP B 148 N PHE B 145 CRYST1 35.315 51.758 97.224 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010286 0.00000