HEADER HYDROLASE 03-MAR-21 7E9A TITLE CRYSTAL STRUCTURE OF KPC-2 IN COMPLEX WITH (S)-2-(1-HYDROXY-1,3- TITLE 2 DIHYDROBENZO[C][1,2]OXABOROL-3-YL)ACRYLIC ACID (4A-(S)) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SERINE-BETA-LACTAMASE KPC-2; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAKPC2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAMASE, SERINE-BETA-LACTAMASE KPC-2, KPC-2, CARBAPENEMASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,Y.-H.YAN REVDAT 5 23-OCT-24 7E9A 1 REMARK REVDAT 4 29-NOV-23 7E9A 1 REMARK REVDAT 3 18-AUG-21 7E9A 1 JRNL REVDAT 2 11-AUG-21 7E9A 1 JRNL REVDAT 1 04-AUG-21 7E9A 0 JRNL AUTH Y.C.XIAO,X.P.CHEN,J.DENG,Y.H.YAN,K.R.ZHU,G.LI,J.L.YU,J.BREM, JRNL AUTH 2 F.CHEN,C.J.SCHOFIELD,G.B.LI JRNL TITL DESIGN AND ENANTIOSELECTIVE SYNTHESIS OF 3-( ALPHA-ACRYLIC JRNL TITL 2 ACID) BENZOXABOROLES TO COMBAT CARBAPENEMASE RESISTANCE. JRNL REF CHEM.COMMUN.(CAMB.) V. 57 7709 2021 JRNL REFN ESSN 1364-548X JRNL PMID 34259249 JRNL DOI 10.1039/D1CC03026D REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 67847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4300 - 5.4206 0.98 5052 151 0.1855 0.2254 REMARK 3 2 5.4206 - 4.3034 1.00 4973 153 0.1493 0.1678 REMARK 3 3 4.3034 - 3.7597 1.00 4937 154 0.1508 0.1873 REMARK 3 4 3.7597 - 3.4160 1.00 4929 152 0.1689 0.1924 REMARK 3 5 3.4160 - 3.1713 1.00 4916 148 0.1908 0.2420 REMARK 3 6 3.1713 - 2.9843 1.00 4900 149 0.2022 0.2461 REMARK 3 7 2.9843 - 2.8349 1.00 4925 148 0.2026 0.2651 REMARK 3 8 2.8349 - 2.7115 1.00 4872 152 0.1869 0.2442 REMARK 3 9 2.7115 - 2.6071 1.00 4900 151 0.1886 0.2397 REMARK 3 10 2.6071 - 2.5172 1.00 4891 150 0.1922 0.2716 REMARK 3 11 2.5172 - 2.4385 1.00 4858 145 0.2026 0.2427 REMARK 3 12 2.4385 - 2.3688 0.99 4833 144 0.2191 0.2518 REMARK 3 13 2.3688 - 2.3064 0.84 4115 126 0.2193 0.2816 REMARK 3 14 2.3064 - 2.2501 0.56 2742 81 0.2012 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 8171 REMARK 3 ANGLE : 1.241 11097 REMARK 3 CHIRALITY : 0.065 1248 REMARK 3 PLANARITY : 0.007 1444 REMARK 3 DIHEDRAL : 16.333 4816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 195 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X CDTE 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70988 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.23900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.50 REMARK 200 R MERGE FOR SHELL (I) : 1.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 6JN3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32-35% PEG 8000, 0.1M LITHIUM REMARK 280 SULPHATE, 0.05M SODIUM ACETATE (PH 4.5), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 25 REMARK 465 THR B 26 REMARK 465 ASN B 27 REMARK 465 LEU D 28 REMARK 465 VAL D 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 25 OG REMARK 470 LYS A 35 CD CE NZ REMARK 470 GLY A 291 CA C O REMARK 470 LYS B 35 CD CE NZ REMARK 470 GLY B 291 CA C O REMARK 470 SER C 25 OG REMARK 470 LYS C 35 CD CE NZ REMARK 470 GLY C 291 CA C O REMARK 470 SER D 25 OG REMARK 470 LYS D 35 CD CE NZ REMARK 470 GLY D 291 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 401 O HOH B 475 1.76 REMARK 500 O1 PEG B 304 O HOH B 401 1.80 REMARK 500 O HOH D 402 O HOH D 427 1.99 REMARK 500 O HOH A 508 O HOH A 514 2.02 REMARK 500 O HOH B 491 O HOH B 492 2.02 REMARK 500 O HOH B 483 O HOH B 484 2.04 REMARK 500 O ASN D 27 O HOH D 401 2.08 REMARK 500 O HOH D 497 O HOH D 500 2.12 REMARK 500 OE1 GLU D 110 O HOH D 402 2.12 REMARK 500 O HOH B 474 O HOH B 487 2.14 REMARK 500 O HOH A 465 O HOH A 483 2.14 REMARK 500 O HOH D 489 O HOH D 505 2.17 REMARK 500 OE1 GLN B 38 O HOH B 402 2.17 REMARK 500 O HOH D 493 O HOH D 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 37 CB GLU B 37 CG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 204 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 204 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL C 29 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU C 31 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG D 96 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 106.75 -163.52 REMARK 500 CYS A 69 -142.75 57.24 REMARK 500 TRP A 105 73.39 52.79 REMARK 500 ARG A 220 -121.51 -115.47 REMARK 500 VAL B 29 -60.83 127.72 REMARK 500 CYS B 69 -139.76 51.28 REMARK 500 ARG B 220 -119.02 -116.16 REMARK 500 LEU B 290 -73.21 -76.04 REMARK 500 THR C 26 -32.92 178.77 REMARK 500 VAL C 29 143.71 154.21 REMARK 500 ALA C 30 121.61 -179.38 REMARK 500 CYS C 69 -146.66 52.65 REMARK 500 ASN C 100 -45.82 -17.77 REMARK 500 TRP C 105 82.09 50.14 REMARK 500 SER C 106 57.77 -146.35 REMARK 500 ARG C 220 -122.04 -121.94 REMARK 500 CYS D 69 -146.05 57.72 REMARK 500 ARG D 96 75.81 -105.20 REMARK 500 TRP D 105 75.66 51.96 REMARK 500 ARG D 220 -116.71 -113.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 7E9A A 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 DBREF 7E9A B 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 DBREF 7E9A C 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 DBREF 7E9A D 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 SEQADV 7E9A SER A 25 UNP Q93LQ9 EXPRESSION TAG SEQADV 7E9A SER B 25 UNP Q93LQ9 EXPRESSION TAG SEQADV 7E9A SER C 25 UNP Q93LQ9 EXPRESSION TAG SEQADV 7E9A SER D 25 UNP Q93LQ9 EXPRESSION TAG SEQRES 1 A 265 SER THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU SEQRES 2 A 265 GLN ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP SEQRES 3 A 265 THR GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU SEQRES 4 A 265 ARG PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA SEQRES 5 A 265 ALA ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU SEQRES 6 A 265 LEU ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL SEQRES 7 A 265 PRO TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY SEQRES 8 A 265 MET THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SEQRES 9 A 265 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU SEQRES 10 A 265 GLY GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE SEQRES 11 A 265 GLY ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU SEQRES 12 A 265 LEU ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SEQRES 13 A 265 SER PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR SEQRES 14 A 265 LEU GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE SEQRES 15 A 265 VAL ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG SEQRES 16 A 265 ILE ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP SEQRES 17 A 265 LYS THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP SEQRES 18 A 265 TYR ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL SEQRES 19 A 265 LEU ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS SEQRES 20 A 265 HIS SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA SEQRES 21 A 265 LEU GLU GLY LEU GLY SEQRES 1 B 265 SER THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU SEQRES 2 B 265 GLN ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP SEQRES 3 B 265 THR GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU SEQRES 4 B 265 ARG PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA SEQRES 5 B 265 ALA ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU SEQRES 6 B 265 LEU ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL SEQRES 7 B 265 PRO TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY SEQRES 8 B 265 MET THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SEQRES 9 B 265 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU SEQRES 10 B 265 GLY GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE SEQRES 11 B 265 GLY ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU SEQRES 12 B 265 LEU ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SEQRES 13 B 265 SER PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR SEQRES 14 B 265 LEU GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE SEQRES 15 B 265 VAL ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG SEQRES 16 B 265 ILE ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP SEQRES 17 B 265 LYS THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP SEQRES 18 B 265 TYR ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL SEQRES 19 B 265 LEU ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS SEQRES 20 B 265 HIS SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA SEQRES 21 B 265 LEU GLU GLY LEU GLY SEQRES 1 C 265 SER THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU SEQRES 2 C 265 GLN ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP SEQRES 3 C 265 THR GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU SEQRES 4 C 265 ARG PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA SEQRES 5 C 265 ALA ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU SEQRES 6 C 265 LEU ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL SEQRES 7 C 265 PRO TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY SEQRES 8 C 265 MET THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SEQRES 9 C 265 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU SEQRES 10 C 265 GLY GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE SEQRES 11 C 265 GLY ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU SEQRES 12 C 265 LEU ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SEQRES 13 C 265 SER PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR SEQRES 14 C 265 LEU GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE SEQRES 15 C 265 VAL ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG SEQRES 16 C 265 ILE ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP SEQRES 17 C 265 LYS THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP SEQRES 18 C 265 TYR ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL SEQRES 19 C 265 LEU ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS SEQRES 20 C 265 HIS SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA SEQRES 21 C 265 LEU GLU GLY LEU GLY SEQRES 1 D 265 SER THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU SEQRES 2 D 265 GLN ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP SEQRES 3 D 265 THR GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU SEQRES 4 D 265 ARG PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA SEQRES 5 D 265 ALA ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU SEQRES 6 D 265 LEU ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL SEQRES 7 D 265 PRO TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY SEQRES 8 D 265 MET THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SEQRES 9 D 265 SER ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU SEQRES 10 D 265 GLY GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE SEQRES 11 D 265 GLY ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU SEQRES 12 D 265 LEU ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SEQRES 13 D 265 SER PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR SEQRES 14 D 265 LEU GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE SEQRES 15 D 265 VAL ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG SEQRES 16 D 265 ILE ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP SEQRES 17 D 265 LYS THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP SEQRES 18 D 265 TYR ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL SEQRES 19 D 265 LEU ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS SEQRES 20 D 265 HIS SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA SEQRES 21 D 265 LEU GLU GLY LEU GLY HET J00 A 301 15 HET ACY A 302 4 HET PEG A 303 7 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET J00 B 301 15 HET PEG B 302 7 HET PEG B 303 7 HET PEG B 304 7 HET PEG B 305 7 HET GOL B 306 6 HET J00 C 301 15 HET ACY C 302 4 HET PEG C 303 7 HET PEG C 304 7 HET PEG C 305 7 HET PEG C 306 7 HET GOL C 307 6 HET J00 D 301 15 HET ACY D 302 4 HET GOL D 303 6 HET PEG D 304 7 HETNAM J00 2-[(3S)-1-OXIDANYL-3H-2,1-BENZOXABOROL-3-YL]PROP-2- HETNAM 2 J00 ENOIC ACID HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN J00 (S)-2-(1-HYDROXY-1,3-DIHYDROBENZO[C][1,2]OXABOROL-3- HETSYN 2 J00 YL)ACRYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 J00 4(C10 H9 B O4) FORMUL 6 ACY 3(C2 H4 O2) FORMUL 7 PEG 10(C4 H10 O3) FORMUL 8 GOL 6(C3 H8 O3) FORMUL 28 HOH *368(H2 O) HELIX 1 AA1 ALA A 30 GLY A 41 1 12 HELIX 2 AA2 SER A 71 GLN A 85 1 15 HELIX 3 AA3 GLY A 98 LEU A 102 5 5 HELIX 4 AA4 SER A 106 TYR A 112 1 7 HELIX 5 AA5 VAL A 119 TYR A 129 1 11 HELIX 6 AA6 ASP A 131 LEU A 142 1 12 HELIX 7 AA7 GLY A 144 ILE A 155 1 12 HELIX 8 AA8 LEU A 167 SER A 171 5 5 HELIX 9 AA9 SER A 182 LEU A 195 1 14 HELIX 10 AB1 ALA A 200 GLY A 213 1 14 HELIX 11 AB2 ARG A 220 VAL A 225 1 6 HELIX 12 AB3 SER A 275 LEU A 290 1 16 HELIX 13 AB4 ALA B 30 GLY B 41 1 12 HELIX 14 AB5 SER B 71 GLN B 85 1 15 HELIX 15 AB6 GLY B 98 LEU B 102 5 5 HELIX 16 AB7 SER B 106 TYR B 112 1 7 HELIX 17 AB8 VAL B 119 TYR B 129 1 11 HELIX 18 AB9 ASP B 131 LEU B 142 1 12 HELIX 19 AC1 GLY B 144 ILE B 155 1 12 HELIX 20 AC2 LEU B 167 SER B 171 5 5 HELIX 21 AC3 SER B 182 GLY B 196 1 15 HELIX 22 AC4 ALA B 200 GLY B 213 1 14 HELIX 23 AC5 ARG B 220 VAL B 225 5 6 HELIX 24 AC6 SER B 275 LEU B 290 1 16 HELIX 25 AC7 GLU C 31 GLY C 41 1 11 HELIX 26 AC8 SER C 71 SER C 84 1 14 HELIX 27 AC9 GLY C 98 LEU C 102 5 5 HELIX 28 AD1 SER C 106 TYR C 112 1 7 HELIX 29 AD2 VAL C 119 SER C 130 1 12 HELIX 30 AD3 ASP C 131 LEU C 142 1 12 HELIX 31 AD4 GLY C 143 ILE C 155 1 13 HELIX 32 AD5 LEU C 167 SER C 171 5 5 HELIX 33 AD6 SER C 182 GLY C 196 1 15 HELIX 34 AD7 ALA C 200 GLY C 213 1 14 HELIX 35 AD8 ARG C 220 VAL C 225 5 6 HELIX 36 AD9 SER C 275 LEU C 290 1 16 HELIX 37 AE1 GLU D 31 GLY D 41 1 11 HELIX 38 AE2 SER D 71 GLN D 85 1 15 HELIX 39 AE3 GLY D 98 LEU D 102 5 5 HELIX 40 AE4 SER D 106 TYR D 112 1 7 HELIX 41 AE5 VAL D 119 SER D 130 1 12 HELIX 42 AE6 ASP D 131 LEU D 142 1 12 HELIX 43 AE7 GLY D 143 ILE D 155 1 13 HELIX 44 AE8 LEU D 167 SER D 171 5 5 HELIX 45 AE9 SER D 182 LEU D 195 1 14 HELIX 46 AF1 ALA D 200 GLY D 213 1 14 HELIX 47 AF2 ARG D 220 VAL D 225 1 6 HELIX 48 AF3 SER D 275 LEU D 290 1 16 SHEET 1 AA1 5 THR A 56 TYR A 60 0 SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O ARG A 266 N SER A 43 SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259 SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N GLY A 236 O ASN A 245 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 AA4 5 THR B 56 TYR B 60 0 SHEET 2 AA4 5 SER B 43 ASP B 50 -1 N VAL B 46 O TYR B 60 SHEET 3 AA4 5 ILE B 259 ARG B 266 -1 O TYR B 264 N GLY B 45 SHEET 4 AA4 5 ALA B 244 TRP B 251 -1 N VAL B 250 O ILE B 259 SHEET 5 AA4 5 ALA B 230 THR B 237 -1 N ALA B 230 O TRP B 251 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 SER B 181 -1 O SER B 181 N PHE B 66 SHEET 1 AA6 2 PRO B 94 ILE B 95 0 SHEET 2 AA6 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 SHEET 1 AA7 5 THR C 56 TYR C 60 0 SHEET 2 AA7 5 SER C 43 ASP C 50 -1 N VAL C 46 O TYR C 60 SHEET 3 AA7 5 ILE C 259 ARG C 266 -1 O ARG C 266 N SER C 43 SHEET 4 AA7 5 ALA C 244 TRP C 251 -1 N ASP C 246 O VAL C 263 SHEET 5 AA7 5 ALA C 230 THR C 237 -1 N ALA C 230 O TRP C 251 SHEET 1 AA8 2 PHE C 66 PRO C 67 0 SHEET 2 AA8 2 THR C 180 SER C 181 -1 O SER C 181 N PHE C 66 SHEET 1 AA9 2 PRO C 94 ILE C 95 0 SHEET 2 AA9 2 MET C 117 THR C 118 -1 O MET C 117 N ILE C 95 SHEET 1 AB1 5 THR D 56 TYR D 60 0 SHEET 2 AB1 5 SER D 43 ASP D 50 -1 N VAL D 46 O TYR D 60 SHEET 3 AB1 5 ILE D 259 ARG D 266 -1 O TYR D 264 N GLY D 45 SHEET 4 AB1 5 ALA D 244 TRP D 251 -1 N VAL D 250 O ILE D 259 SHEET 5 AB1 5 ALA D 230 THR D 237 -1 N ALA D 230 O TRP D 251 SHEET 1 AB2 2 PHE D 66 PRO D 67 0 SHEET 2 AB2 2 THR D 180 SER D 181 -1 O SER D 181 N PHE D 66 SHEET 1 AB3 2 PRO D 94 ILE D 95 0 SHEET 2 AB3 2 MET D 117 THR D 118 -1 O MET D 117 N ILE D 95 SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.08 SSBOND 2 CYS B 69 CYS B 238 1555 1555 2.10 SSBOND 3 CYS C 69 CYS C 238 1555 1555 2.08 SSBOND 4 CYS D 69 CYS D 238 1555 1555 2.06 LINK OG SER A 70 B7 J00 A 301 1555 1555 1.74 LINK OG SER B 70 B7 J00 B 301 1555 1555 1.77 LINK OG SER C 70 B7 J00 C 301 1555 1555 1.72 LINK OG SER D 70 B7 J00 D 301 1555 1555 1.83 CISPEP 1 GLU A 166 LEU A 167 0 0.03 CISPEP 2 LEU B 28 VAL B 29 0 -6.36 CISPEP 3 GLU B 166 LEU B 167 0 -0.82 CISPEP 4 THR C 26 ASN C 27 0 -11.07 CISPEP 5 GLU C 166 LEU C 167 0 0.93 CISPEP 6 GLU D 166 LEU D 167 0 7.25 CRYST1 165.421 165.421 94.860 90.00 90.00 120.00 P 3 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006045 0.003490 0.000000 0.00000 SCALE2 0.000000 0.006980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010542 0.00000