HEADER FLUORESCENT PROTEIN 05-MAR-21 7E9Y
TITLE CRYSTAL STRUCTURE OF ELACCO1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LACTATE-BINDING PERIPLASMIC PROTEIN TTHA0766,LACTATE-
COMPND 3 BINDING PERIPLASMIC PROTEIN TTHA0766;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: ABC TRANSPORTER,SOLUTE-BINDING PROTEIN,EXTRACYTOPLASMIC
COMPND 6 SOLUTE RECEPTOR PROTEIN TTHA0766,TRAP TRANSPORTER LACTATE-BINDING
COMPND 7 SUBUNIT P;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8, THERMUS THERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 300852, 274;
SOURCE 4 STRAIN: HB8;
SOURCE 5 GENE: TTHA0766;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS BIOSENSOR, GENETICALLY ENCODED FLUORESCENT BIOSENSOR, EXTRACELLULAR,
KEYWDS 2 L-LACTATE, FLUORESCENT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.WEN,R.E.CAMPBELL,M.J.LEMIEUX,Y.NASU
REVDAT 3 29-NOV-23 7E9Y 1 REMARK
REVDAT 2 15-NOV-23 7E9Y 1 ATOM
REVDAT 1 22-DEC-21 7E9Y 0
JRNL AUTH Y.NASU,C.MURPHY-ROYAL,Y.WEN,J.N.HAIDEY,R.S.MOLINA,
JRNL AUTH 2 A.AGGARWAL,S.ZHANG,Y.KAMIJO,M.E.PAQUET,K.PODGORSKI,
JRNL AUTH 3 M.DROBIZHEV,J.S.BAINS,M.J.LEMIEUX,G.R.GORDON,R.E.CAMPBELL
JRNL TITL A GENETICALLY ENCODED FLUORESCENT BIOSENSOR FOR
JRNL TITL 2 EXTRACELLULAR L-LACTATE.
JRNL REF NAT COMMUN V. 12 7058 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34873165
JRNL DOI 10.1038/S41467-021-27332-2
REMARK 2
REMARK 2 RESOLUTION. 2.25 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.14_3260
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.49
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 35740
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.149
REMARK 3 R VALUE (WORKING SET) : 0.147
REMARK 3 FREE R VALUE : 0.185
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.610
REMARK 3 FREE R VALUE TEST SET COUNT : 2005
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 50.0000 - 5.4211 1.00 2543 156 0.1748 0.1796
REMARK 3 2 5.4211 - 4.3035 1.00 2441 151 0.1180 0.1420
REMARK 3 3 4.3035 - 3.7597 1.00 2439 142 0.1259 0.1615
REMARK 3 4 3.7597 - 3.4160 1.00 2418 140 0.1428 0.1749
REMARK 3 5 3.4160 - 3.1712 1.00 2407 137 0.1522 0.1788
REMARK 3 6 3.1712 - 2.9843 1.00 2408 149 0.1517 0.1860
REMARK 3 7 2.9843 - 2.8348 1.00 2381 140 0.1584 0.2251
REMARK 3 8 2.8348 - 2.7114 1.00 2379 142 0.1571 0.1974
REMARK 3 9 2.7114 - 2.6070 1.00 2391 137 0.1514 0.2010
REMARK 3 10 2.6070 - 2.5171 1.00 2408 145 0.1489 0.2295
REMARK 3 11 2.5171 - 2.4384 1.00 2357 147 0.1559 0.2117
REMARK 3 12 2.4384 - 2.3687 1.00 2397 134 0.1499 0.2111
REMARK 3 13 2.3687 - 2.3063 1.00 2385 145 0.1531 0.2154
REMARK 3 14 2.3063 - 2.2500 1.00 2381 140 0.1536 0.2021
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.400
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.44
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7E9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-21.
REMARK 100 THE DEPOSITION ID IS D_1300021035.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-AUG-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : CLSI
REMARK 200 BEAMLINE : 08ID-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.03
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35740
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250
REMARK 200 RESOLUTION RANGE LOW (A) : 52.492
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 5.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 2ZZV, 3SG6
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.70
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE DIBASIC 20% W/V
REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.37400
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.37400
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.10850
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.49150
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.10850
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.49150
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.37400
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.10850
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.49150
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.37400
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.10850
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.49150
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 806 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1198 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS A -31
REMARK 465 HIS A -30
REMARK 465 HIS A -29
REMARK 465 HIS A -28
REMARK 465 HIS A -27
REMARK 465 HIS A -26
REMARK 465 GLY A -25
REMARK 465 MET A -24
REMARK 465 ALA A -23
REMARK 465 SER A -22
REMARK 465 MET A -21
REMARK 465 THR A -20
REMARK 465 GLY A -19
REMARK 465 GLY A -18
REMARK 465 GLN A -17
REMARK 465 GLN A -16
REMARK 465 MET A -15
REMARK 465 GLY A -14
REMARK 465 ARG A -13
REMARK 465 ASP A -12
REMARK 465 LEU A -11
REMARK 465 TYR A -10
REMARK 465 ASP A -9
REMARK 465 ASP A -8
REMARK 465 ASP A -7
REMARK 465 ASP A -6
REMARK 465 LYS A -5
REMARK 465 ASP A -4
REMARK 465 PRO A -3
REMARK 465 SER A -2
REMARK 465 SER A -1
REMARK 465 ARG A 0
REMARK 465 MET A 1
REMARK 465 PHE A 2
REMARK 465 SER A 3
REMARK 465 PRO A 4
REMARK 465 LEU A 5
REMARK 465 ALA A 6
REMARK 465 VAL A 7
REMARK 465 ALA A 8
REMARK 465 GLN A 9
REMARK 465 ALA A 10
REMARK 465 GLU A 282
REMARK 465 LEU A 283
REMARK 465 TYR A 284
REMARK 465 LYS A 285
REMARK 465 GLY A 286
REMARK 465 GLY A 287
REMARK 465 THR A 288
REMARK 465 GLY A 289
REMARK 465 GLY A 290
REMARK 465 ARG A 291
REMARK 465 MET A 292
REMARK 465 VAL A 293
REMARK 465 SER A 294
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2
REMARK 470 ASP A 425 CG OD1 OD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HE ARG A 215 O HOH A 715 1.50
REMARK 500 HG1 THR A 580 O HOH A 718 1.51
REMARK 500 HZ1 LYS A 203 O HOH A 702 1.55
REMARK 500 OD2 ASP A 421 O HOH A 701 1.81
REMARK 500 O HOH A 1085 O HOH A 1130 1.93
REMARK 500 O HOH A 1085 O HOH A 1102 1.97
REMARK 500 O HOH A 1128 O HOH A 1159 2.02
REMARK 500 O HOH A 997 O HOH A 1177 2.03
REMARK 500 O HOH A 1181 O HOH A 1205 2.04
REMARK 500 NZ LYS A 203 O HOH A 702 2.10
REMARK 500 O HOH A 891 O HOH A 1039 2.11
REMARK 500 O HOH A 837 O HOH A 1096 2.11
REMARK 500 O HOH A 1105 O HOH A 1178 2.12
REMARK 500 N LYS A 295 O HOH A 703 2.16
REMARK 500 NZ LYS A 525 O HOH A 704 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 HH21 ARG A 14 OH TYR A 229 4555 1.37
REMARK 500 NH2 ARG A 14 OH TYR A 229 4555 2.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES
REMARK 500 ASP A 444 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 134 -78.79 -155.90
REMARK 500 ASP A 135 166.22 179.49
REMARK 500 PRO A 144 99.03 -68.85
REMARK 500 PRO A 159 37.66 -93.06
REMARK 500 VAL A 190 -51.96 64.34
REMARK 500 ASP A 192 -55.93 75.69
REMARK 500 PHE A 437 95.53 -163.28
REMARK 500 PHE A 445 -97.56 -142.86
REMARK 500 VAL A 446 -141.09 -115.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1210 DISTANCE = 5.93 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 601 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN A 137 OD1
REMARK 620 2 ASP A 444 OD1 79.3
REMARK 620 3 ASP A 444 OD2 127.5 48.9
REMARK 620 4 PHE A 445 O 84.3 77.4 91.2
REMARK 620 5 GLN A 475 OE1 77.7 94.3 95.8 161.3
REMARK 620 6 2OP A 602 O 145.7 132.3 86.3 90.1 107.6
REMARK 620 7 2OP A 602 OHN 77.2 153.3 155.1 87.9 92.8 68.8
REMARK 620 N 1 2 3 4 5 6
DBREF 7E9Y A 2 192 UNP Q5SK82 TLBP_THET8 23 213
DBREF 7E9Y A 0 0 PDB 7E9Y 7E9Y 0 0
DBREF 7E9Y A 442 589 UNP Q5SK82 TLBP_THET8 214 361
SEQADV 7E9Y HIS A -31 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y HIS A -30 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y HIS A -29 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y HIS A -28 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y HIS A -27 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y HIS A -26 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y GLY A -25 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y MET A -24 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ALA A -23 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y SER A -22 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y MET A -21 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y THR A -20 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y GLY A -19 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y GLY A -18 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y GLN A -17 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y GLN A -16 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y MET A -15 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y GLY A -14 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ARG A -13 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASP A -12 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y LEU A -11 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y TYR A -10 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASP A -9 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASP A -8 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASP A -7 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASP A -6 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y LYS A -5 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASP A -4 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y PRO A -3 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y SER A -2 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y SER A -1 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ARG A 0 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y MET A 1 UNP Q5SK82 EXPRESSION TAG
SEQADV 7E9Y ASN A 116 UNP Q5SK82 ILE 137 ENGINEERED MUTATION
SEQADV 7E9Y THR A 138 UNP Q5SK82 ILE 159 ENGINEERED MUTATION
SEQADV 7E9Y ARG A 142 UNP Q5SK82 LYS 163 ENGINEERED MUTATION
SEQRES 1 A 619 HIS HIS HIS HIS HIS HIS GLY MET ALA SER MET THR GLY
SEQRES 2 A 619 GLY GLN GLN MET GLY ARG ASP LEU TYR ASP ASP ASP ASP
SEQRES 3 A 619 LYS ASP PRO SER SER ARG MET PHE SER PRO LEU ALA VAL
SEQRES 4 A 619 ALA GLN ALA ARG ARG TYR ARG TRP ARG ILE GLN THR ALA
SEQRES 5 A 619 TRP ASP ALA GLY THR VAL GLY TYR SER LEU PHE GLN LYS
SEQRES 6 A 619 PHE THR GLU ARG VAL LYS GLU LEU THR ASP GLY GLN LEU
SEQRES 7 A 619 GLU VAL GLN PRO PHE PRO ALA GLY ALA VAL VAL GLY THR
SEQRES 8 A 619 PHE ASP MET PHE ASP ALA VAL LYS THR GLY VAL LEU ASP
SEQRES 9 A 619 GLY MET ASN PRO PHE THR LEU TYR TRP ALA GLY ARG MET
SEQRES 10 A 619 PRO VAL THR ALA PHE LEU SER SER TYR ALA LEU GLY LEU
SEQRES 11 A 619 ASP ARG PRO ASP GLN TRP GLU THR TRP PHE TYR SER LEU
SEQRES 12 A 619 GLY GLY LEU ASP ASN ALA ARG ARG ALA PHE ALA GLU GLN
SEQRES 13 A 619 GLY LEU PHE TYR VAL GLY PRO VAL GLN HIS ASP LEU ASN
SEQRES 14 A 619 THR ILE HIS SER ARG LYS PRO ILE ARG ARG PHE GLU ASP
SEQRES 15 A 619 PHE LYS GLY VAL LYS LEU ARG VAL PRO GLY GLY MET ILE
SEQRES 16 A 619 ALA GLU VAL PHE ALA ALA ALA GLY ALA SER THR VAL LEU
SEQRES 17 A 619 LEU PRO GLY GLY GLU VAL TYR PRO ALA LEU GLU ARG GLY
SEQRES 18 A 619 VAL ILE ASP TRP SER HIS ASN VAL TYR ILE MET ALA ASP
SEQRES 19 A 619 LYS GLN ARG ASN GLY ILE LYS ALA ASN PHE GLU ILE ARG
SEQRES 20 A 619 HIS ASN ILE GLU ASP GLY GLY VAL GLN LEU ALA TYR HIS
SEQRES 21 A 619 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU
SEQRES 22 A 619 LEU PRO ASP ASN HIS TYR LEU SER THR GLN THR LYS LEU
SEQRES 23 A 619 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU
SEQRES 24 A 619 LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU GLY MET
SEQRES 25 A 619 ASP GLU LEU TYR LYS GLY GLY THR GLY GLY ARG MET VAL
SEQRES 26 A 619 SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE
SEQRES 27 A 619 LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE
SEQRES 28 A 619 SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SER GLY
SEQRES 29 A 619 LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU
SEQRES 30 A 619 PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO VAL
SEQRES 31 A 619 GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS GLN HIS
SEQRES 32 A 619 ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR ILE GLN
SEQRES 33 A 619 GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR LYS
SEQRES 34 A 619 THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL
SEQRES 35 A 619 ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP
SEQRES 36 A 619 GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR SER PHE ASN
SEQRES 37 A 619 ASP GLY GLY ALA ALA ASP PHE VAL GLY PRO ALA VAL ASN
SEQRES 38 A 619 TYR ASN LEU GLY PHE HIS GLN VAL ALA LYS TYR ILE ILE
SEQRES 39 A 619 MET GLY PRO PRO GLU THR PRO ALA ILE HIS GLN PRO VAL
SEQRES 40 A 619 ASP LEU MET ASP PHE THR ILE ASN LEU ASN ARG TRP ARG
SEQRES 41 A 619 SER LEU PRO LYS PRO LEU GLN GLU ARG PHE ILE ALA ALA
SEQRES 42 A 619 VAL HIS GLU TYR SER TRP ILE HIS TYR ALA GLY ILE GLN
SEQRES 43 A 619 LYS ALA ASN LEU GLU ALA TRP PRO LYS TYR ARG GLN ALA
SEQRES 44 A 619 GLY VAL GLU VAL ILE ARG LEU SER ASN GLU ASP VAL ARG
SEQRES 45 A 619 LYS PHE ARG ARG LEU ALA ILE PRO ILE TRP PHE LYS TRP
SEQRES 46 A 619 ALA LYS MET ASP LYS TYR SER ARG GLU ALA PHE ALA SER
SEQRES 47 A 619 GLN LEU GLU TYR MET LYS GLY ILE GLY TYR VAL THR ASP
SEQRES 48 A 619 GLU GLU LEU LYS GLY LEU SER LEU
HET CRO A 358 34
HET CA A 601 1
HET 2OP A 602 11
HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-
HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-
HETNAM 3 CRO YL}ACETIC ACID
HETNAM CA CALCIUM ION
HETNAM 2OP (2S)-2-HYDROXYPROPANOIC ACID
HETSYN CRO PEPTIDE DERIVED CHROMOPHORE
FORMUL 1 CRO C15 H17 N3 O5
FORMUL 2 CA CA 2+
FORMUL 3 2OP C3 H6 O3
FORMUL 4 HOH *510(H2 O)
HELIX 1 AA1 THR A 25 THR A 42 1 18
HELIX 2 AA2 GLY A 58 PHE A 60 5 3
HELIX 3 AA3 ASP A 61 THR A 68 1 8
HELIX 4 AA4 PHE A 77 ALA A 82 5 6
HELIX 5 AA5 MET A 85 LEU A 91 5 7
HELIX 6 AA6 ARG A 100 LEU A 111 1 12
HELIX 7 AA7 GLY A 112 GLU A 123 1 12
HELIX 8 AA8 ARG A 147 LYS A 152 5 6
HELIX 9 AA9 GLY A 160 ALA A 170 1 11
HELIX 10 AB1 PRO A 178 GLY A 180 5 3
HELIX 11 AB2 GLU A 181 ARG A 188 1 8
HELIX 12 AB3 LYS A 203 ASN A 206 5 4
HELIX 13 AB4 LYS A 295 THR A 301 5 7
HELIX 14 AB5 PRO A 348 VAL A 353 5 6
HELIX 15 AB6 VAL A 360 SER A 364 5 5
HELIX 16 AB7 PRO A 367 HIS A 373 5 7
HELIX 17 AB8 ASP A 374 ALA A 379 1 6
HELIX 18 AB9 GLY A 447 LEU A 454 1 8
HELIX 19 AC1 GLY A 455 ALA A 460 1 6
HELIX 20 AC2 LEU A 486 LEU A 492 1 7
HELIX 21 AC3 PRO A 493 ALA A 529 1 37
HELIX 22 AC4 SER A 537 LYS A 557 1 21
HELIX 23 AC5 ASP A 559 ILE A 576 1 18
HELIX 24 AC6 ASP A 581 LYS A 585 5 5
SHEET 1 AA1 5 LEU A 46 PHE A 51 0
SHEET 2 AA1 5 TYR A 13 THR A 19 1 N TYR A 13 O GLU A 47
SHEET 3 AA1 5 GLY A 73 ASN A 75 1 O ASN A 75 N GLN A 18
SHEET 4 AA1 5 MET A 480 ASN A 485 -1 O THR A 483 N MET A 74
SHEET 5 AA1 5 LEU A 126 VAL A 132 -1 N PHE A 127 O ILE A 484
SHEET 1 AA2 6 SER A 173 VAL A 175 0
SHEET 2 AA2 6 LYS A 155 ARG A 157 1 N LEU A 156 O SER A 173
SHEET 3 AA2 6 GLY A 441 ASP A 444 1 O ALA A 442 N LYS A 155
SHEET 4 AA2 6 ILE A 139 SER A 141 -1 N HIS A 140 O ALA A 443
SHEET 5 AA2 6 TYR A 462 MET A 465 -1 O TYR A 462 N SER A 141
SHEET 6 AA2 6 GLU A 532 ARG A 535 1 O ILE A 534 N ILE A 463
SHEET 1 AA312 VAL A 197 ASP A 202 0
SHEET 2 AA312 GLY A 207 ASN A 217 -1 O GLY A 207 N ASP A 202
SHEET 3 AA312 VAL A 223 PRO A 234 -1 O HIS A 228 N PHE A 212
SHEET 4 AA312 TYR A 384 PHE A 392 -1 O PHE A 391 N TYR A 227
SHEET 5 AA312 ASN A 397 GLU A 407 -1 O TYR A 398 N ILE A 390
SHEET 6 AA312 THR A 410 ILE A 420 -1 O VAL A 412 N LYS A 405
SHEET 7 AA312 VAL A 304 VAL A 314 1 N ASP A 313 O GLY A 419
SHEET 8 AA312 HIS A 317 ASP A 328 -1 O PHE A 319 N GLY A 312
SHEET 9 AA312 LYS A 333 CYS A 340 -1 O LYS A 333 N ASP A 328
SHEET 10 AA312 HIS A 264 ALA A 274 -1 N LEU A 267 O LEU A 336
SHEET 11 AA312 HIS A 246 SER A 255 -1 N LYS A 253 O LEU A 268
SHEET 12 AA312 VAL A 197 ASP A 202 -1 N ILE A 199 O HIS A 246
LINK C LEU A 356 N1 CRO A 358 1555 1555 1.34
LINK C3 CRO A 358 N VAL A 360 1555 1555 1.33
LINK OD1 ASN A 137 CA CA A 601 1555 1555 2.44
LINK OD1 ASP A 444 CA CA A 601 1555 1555 2.90
LINK OD2 ASP A 444 CA CA A 601 1555 1555 2.13
LINK O PHE A 445 CA CA A 601 1555 1555 2.31
LINK OE1 GLN A 475 CA CA A 601 1555 1555 2.42
LINK CA CA A 601 O 2OP A 602 1555 1555 2.42
LINK CA CA A 601 OHN 2OP A 602 1555 1555 2.30
CISPEP 1 GLY A 221 GLY A 222 0 -5.49
CISPEP 2 MET A 380 PRO A 381 0 6.41
CRYST1 102.217 104.983 138.748 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009783 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009525 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007207 0.00000