HEADER IMMUNE SYSTEM 06-MAR-21 7EA6 TITLE CRYSTAL STRUCTURE OF TCR-017 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T CELL RECEPTOR 017 ALPHA CHAIN; COMPND 3 CHAIN: D, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T CELL RECEPTOR 017 BETA CHAIN; COMPND 7 CHAIN: E, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAE,S.YAMASAKI REVDAT 4 06-NOV-24 7EA6 1 REMARK REVDAT 3 29-NOV-23 7EA6 1 REMARK REVDAT 2 16-FEB-22 7EA6 1 JRNL REVDAT 1 13-OCT-21 7EA6 0 JRNL AUTH X.LU,Y.HOSONO,M.NAGAE,S.ISHIZUKA,E.ISHIKAWA,D.MOTOOKA, JRNL AUTH 2 Y.OZAKI,N.SAX,Y.MAEDA,Y.KATO,T.MORITA,R.SHINNAKASU,T.INOUE, JRNL AUTH 3 T.ONODERA,T.MATSUMURA,M.SHINKAI,T.SATO,S.NAKAMURA,S.MORI, JRNL AUTH 4 T.KANDA,E.E.NAKAYAMA,T.SHIODA,T.KUROSAKI,K.TAKEDA, JRNL AUTH 5 A.KUMANOGOH,H.ARASE,H.NAKAGAMI,K.YAMASHITA,Y.TAKAHASHI, JRNL AUTH 6 S.YAMASAKI JRNL TITL IDENTIFICATION OF CONSERVED SARS-COV-2 SPIKE EPITOPES THAT JRNL TITL 2 EXPAND PUBLIC CTFH CLONOTYPES IN MILD COVID-19 PATIENTS. JRNL REF J.EXP.MED. V. 218 2021 JRNL REFN ESSN 1540-9538 JRNL PMID 34647971 JRNL DOI 10.1084/JEM.20211327 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.356 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.048 REMARK 3 FREE R VALUE TEST SET COUNT : 2757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4180 - 5.9124 1.00 2763 157 0.2231 0.2759 REMARK 3 2 5.9124 - 4.6948 1.00 2669 141 0.2019 0.2262 REMARK 3 3 4.6948 - 4.1019 1.00 2600 149 0.1814 0.2474 REMARK 3 4 4.1019 - 3.7271 1.00 2654 141 0.2016 0.2580 REMARK 3 5 3.7271 - 3.4601 1.00 2595 147 0.2145 0.2920 REMARK 3 6 3.4601 - 3.2561 1.00 2615 117 0.2123 0.2550 REMARK 3 7 3.2561 - 3.0931 1.00 2598 136 0.2221 0.2949 REMARK 3 8 3.0931 - 2.9585 1.00 2580 134 0.2270 0.2504 REMARK 3 9 2.9585 - 2.8446 1.00 2592 116 0.2374 0.2875 REMARK 3 10 2.8446 - 2.7465 1.00 2549 152 0.2458 0.2892 REMARK 3 11 2.7465 - 2.6606 1.00 2576 170 0.2445 0.3009 REMARK 3 12 2.6606 - 2.5846 1.00 2547 143 0.2416 0.3057 REMARK 3 13 2.5846 - 2.5166 1.00 2550 144 0.2489 0.3014 REMARK 3 14 2.5166 - 2.4552 1.00 2568 150 0.2434 0.3174 REMARK 3 15 2.4552 - 2.3994 1.00 2558 139 0.2638 0.3229 REMARK 3 16 2.3994 - 2.3483 0.99 2612 115 0.2662 0.3387 REMARK 3 17 2.3483 - 2.3013 1.00 2494 140 0.2694 0.3485 REMARK 3 18 2.3013 - 2.2579 1.00 2605 130 0.2777 0.3284 REMARK 3 19 2.2579 - 2.2176 0.99 2550 115 0.2940 0.3559 REMARK 3 20 2.2176 - 2.1800 0.99 2580 121 0.3024 0.3893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.321 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7028 REMARK 3 ANGLE : 1.038 9555 REMARK 3 CHIRALITY : 0.055 1027 REMARK 3 PLANARITY : 0.006 1256 REMARK 3 DIHEDRAL : 8.646 4219 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PHENIX 1.12_2829 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 371960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.81600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5C0B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH 7.0), 1.1M SODIUM REMARK 280 MALONATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.55250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 157.55250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.52450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.58750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.52450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.58750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 157.55250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.52450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.58750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.55250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.52450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.58750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN D 1 REMARK 465 ARG D 2 REMARK 465 LYS D 3 REMARK 465 PHE D 198 REMARK 465 PHE D 199 REMARK 465 PRO D 200 REMARK 465 SER D 201 REMARK 465 ASP E 239 REMARK 465 GLN A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 198 REMARK 465 PHE A 199 REMARK 465 PRO A 200 REMARK 465 SER A 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 42 O VAL B 150 2.03 REMARK 500 OE1 GLU B 83 O HOH B 301 2.08 REMARK 500 O ASP B 239 O HOH B 302 2.12 REMARK 500 O ASP D 130 O HOH D 301 2.13 REMARK 500 OE1 GLU E 66 O HOH E 301 2.15 REMARK 500 NH2 ARG B 62 OD2 ASP B 84 2.18 REMARK 500 O HOH E 370 O HOH E 386 2.19 REMARK 500 O HOH E 349 O HOH E 375 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 166 CB - CG - SD ANGL. DEV. = 19.7 DEGREES REMARK 500 MET A 166 CG - SD - CE ANGL. DEV. = 22.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG D 42 51.75 -96.93 REMARK 500 ALA D 85 -178.07 -179.21 REMARK 500 ASP D 117 56.97 -148.33 REMARK 500 SER D 165 -15.92 -43.77 REMARK 500 ASP D 167 48.04 71.91 REMARK 500 ASN D 189 -158.38 -71.48 REMARK 500 SER D 191 99.31 -161.48 REMARK 500 ILE D 192 -175.79 81.31 REMARK 500 ILE D 193 50.86 -110.38 REMARK 500 ARG E 14 -24.15 86.22 REMARK 500 ASN E 49 -137.56 62.01 REMARK 500 PRO E 59 -90.96 -37.93 REMARK 500 LYS E 60 -124.23 -138.62 REMARK 500 VAL E 71 -102.94 -110.65 REMARK 500 GLN E 78 115.02 -160.04 REMARK 500 ALA E 86 173.15 178.07 REMARK 500 THR E 95 -107.21 -127.82 REMARK 500 GLN A 32 -2.35 -145.37 REMARK 500 ARG A 42 38.53 -97.94 REMARK 500 ASP A 58 93.72 -162.87 REMARK 500 GLN A 70 51.46 73.52 REMARK 500 ALA A 85 -178.85 -179.49 REMARK 500 SER A 95 37.15 71.02 REMARK 500 ASN A 115 63.19 -115.48 REMARK 500 SER A 128 91.60 -59.01 REMARK 500 PRO A 194 -174.21 -66.40 REMARK 500 GLN B 15 -167.84 -78.46 REMARK 500 ASN B 49 -97.69 51.31 REMARK 500 ASP B 54 89.76 -150.87 REMARK 500 LYS B 60 97.59 -57.23 REMARK 500 ASP B 61 -32.79 179.23 REMARK 500 ARG B 62 -7.67 -143.28 REMARK 500 VAL B 71 -94.62 -115.98 REMARK 500 THR B 95 -104.35 -115.72 REMARK 500 HIS B 162 -31.67 -134.82 REMARK 500 ASP B 180 31.85 -89.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL E 165 CYS E 166 149.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EA6 D 1 201 PDB 7EA6 7EA6 1 201 DBREF 7EA6 E 1 239 PDB 7EA6 7EA6 1 239 DBREF 7EA6 A 1 201 PDB 7EA6 7EA6 1 201 DBREF 7EA6 B 1 239 PDB 7EA6 7EA6 1 239 SEQRES 1 D 201 GLN ARG LYS GLU VAL GLU GLN ASP PRO GLY PRO PHE ASN SEQRES 2 D 201 VAL PRO GLU GLY ALA THR VAL ALA PHE ASN CYS THR TYR SEQRES 3 D 201 SER ASN SER ALA SER GLN SER PHE PHE TRP TYR ARG GLN SEQRES 4 D 201 ASP CYS ARG LYS GLU PRO LYS LEU LEU MET SER VAL TYR SEQRES 5 D 201 SER SER GLY ASN GLU ASP GLY ARG PHE THR ALA GLN LEU SEQRES 6 D 201 ASN ARG ALA SER GLN TYR ILE SER LEU LEU ILE ARG ASP SEQRES 7 D 201 SER LYS LEU SER ASP SER ALA THR TYR LEU CYS VAL VAL SEQRES 8 D 201 ASN ARG GLY SER SER TYR LYS LEU ILE PHE GLY SER GLY SEQRES 9 D 201 THR ARG LEU LEU VAL ARG PRO ASP ILE GLN ASN PRO ASP SEQRES 10 D 201 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 D 201 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 D 201 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 D 201 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 D 201 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 D 201 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 D 201 ASP THR PHE PHE PRO SER SEQRES 1 E 239 GLY VAL ALA GLN SER PRO ARG TYR LYS ILE ILE GLU LYS SEQRES 2 E 239 ARG GLN SER VAL ALA PHE TRP CYS ASN PRO ILE SER GLY SEQRES 3 E 239 HIS ALA THR LEU TYR TRP TYR GLN GLN ILE LEU GLY GLN SEQRES 4 E 239 GLY PRO LYS LEU LEU ILE GLN PHE GLN ASN ASN GLY VAL SEQRES 5 E 239 VAL ASP ASP SER GLN LEU PRO LYS ASP ARG PHE SER ALA SEQRES 6 E 239 GLU ARG LEU LYS GLY VAL ASP SER THR LEU LYS ILE GLN SEQRES 7 E 239 PRO ALA LYS LEU GLU ASP SER ALA VAL TYR LEU CYS ALA SEQRES 8 E 239 SER SER GLN THR TYR GLU GLN TYR PHE GLY PRO GLY THR SEQRES 9 E 239 ARG LEU THR VAL THR GLU ASP LEU LYS ASN VAL PHE PRO SEQRES 10 E 239 PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SEQRES 11 E 239 SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA THR SEQRES 12 E 239 GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP VAL SEQRES 13 E 239 ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP PRO SEQRES 14 E 239 GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER ARG SEQRES 15 E 239 TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR PHE SEQRES 16 E 239 TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN SEQRES 17 E 239 PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN ASP SEQRES 18 E 239 ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU ALA SEQRES 19 E 239 TRP GLY ARG ALA ASP SEQRES 1 A 201 GLN ARG LYS GLU VAL GLU GLN ASP PRO GLY PRO PHE ASN SEQRES 2 A 201 VAL PRO GLU GLY ALA THR VAL ALA PHE ASN CYS THR TYR SEQRES 3 A 201 SER ASN SER ALA SER GLN SER PHE PHE TRP TYR ARG GLN SEQRES 4 A 201 ASP CYS ARG LYS GLU PRO LYS LEU LEU MET SER VAL TYR SEQRES 5 A 201 SER SER GLY ASN GLU ASP GLY ARG PHE THR ALA GLN LEU SEQRES 6 A 201 ASN ARG ALA SER GLN TYR ILE SER LEU LEU ILE ARG ASP SEQRES 7 A 201 SER LYS LEU SER ASP SER ALA THR TYR LEU CYS VAL VAL SEQRES 8 A 201 ASN ARG GLY SER SER TYR LYS LEU ILE PHE GLY SER GLY SEQRES 9 A 201 THR ARG LEU LEU VAL ARG PRO ASP ILE GLN ASN PRO ASP SEQRES 10 A 201 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 A 201 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 A 201 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 A 201 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 A 201 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 A 201 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 A 201 ASP THR PHE PHE PRO SER SEQRES 1 B 239 GLY VAL ALA GLN SER PRO ARG TYR LYS ILE ILE GLU LYS SEQRES 2 B 239 ARG GLN SER VAL ALA PHE TRP CYS ASN PRO ILE SER GLY SEQRES 3 B 239 HIS ALA THR LEU TYR TRP TYR GLN GLN ILE LEU GLY GLN SEQRES 4 B 239 GLY PRO LYS LEU LEU ILE GLN PHE GLN ASN ASN GLY VAL SEQRES 5 B 239 VAL ASP ASP SER GLN LEU PRO LYS ASP ARG PHE SER ALA SEQRES 6 B 239 GLU ARG LEU LYS GLY VAL ASP SER THR LEU LYS ILE GLN SEQRES 7 B 239 PRO ALA LYS LEU GLU ASP SER ALA VAL TYR LEU CYS ALA SEQRES 8 B 239 SER SER GLN THR TYR GLU GLN TYR PHE GLY PRO GLY THR SEQRES 9 B 239 ARG LEU THR VAL THR GLU ASP LEU LYS ASN VAL PHE PRO SEQRES 10 B 239 PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SEQRES 11 B 239 SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA THR SEQRES 12 B 239 GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP VAL SEQRES 13 B 239 ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP PRO SEQRES 14 B 239 GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER ARG SEQRES 15 B 239 TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR PHE SEQRES 16 B 239 TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN SEQRES 17 B 239 PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN ASP SEQRES 18 B 239 ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU ALA SEQRES 19 B 239 TRP GLY ARG ALA ASP FORMUL 5 HOH *307(H2 O) HELIX 1 AA1 LYS D 80 SER D 84 5 5 HELIX 2 AA2 ARG D 164 ASP D 167 5 4 HELIX 3 AA3 ALA D 183 ALA D 187 5 5 HELIX 4 AA4 LYS E 81 SER E 85 5 5 HELIX 5 AA5 ASP E 111 VAL E 115 5 5 HELIX 6 AA6 SER E 126 GLN E 134 1 9 HELIX 7 AA7 ALA E 193 ASN E 198 1 6 HELIX 8 AA8 LYS A 80 SER A 84 5 5 HELIX 9 AA9 ARG A 164 ASP A 167 5 4 HELIX 10 AB1 ALA A 183 ALA A 187 5 5 HELIX 11 AB2 LYS B 81 SER B 85 5 5 HELIX 12 AB3 ASP B 111 VAL B 115 5 5 HELIX 13 AB4 SER B 126 GLN B 134 1 9 HELIX 14 AB5 ALA B 193 GLN B 197 1 5 SHEET 1 AA1 5 VAL D 5 GLN D 7 0 SHEET 2 AA1 5 VAL D 20 TYR D 26 -1 O THR D 25 N GLU D 6 SHEET 3 AA1 5 TYR D 71 ILE D 76 -1 O LEU D 74 N PHE D 22 SHEET 4 AA1 5 PHE D 61 ASN D 66 -1 N THR D 62 O LEU D 75 SHEET 5 AA1 5 ASN D 56 ASP D 58 -1 N ASP D 58 O PHE D 61 SHEET 1 AA2 5 PHE D 12 PRO D 15 0 SHEET 2 AA2 5 THR D 105 ARG D 110 1 O ARG D 106 N PHE D 12 SHEET 3 AA2 5 ALA D 85 ASN D 92 -1 N ALA D 85 O LEU D 107 SHEET 4 AA2 5 PHE D 34 GLN D 39 -1 N TYR D 37 O LEU D 88 SHEET 5 AA2 5 LYS D 46 SER D 50 -1 O LYS D 46 N ARG D 38 SHEET 1 AA3 4 PHE D 12 PRO D 15 0 SHEET 2 AA3 4 THR D 105 ARG D 110 1 O ARG D 106 N PHE D 12 SHEET 3 AA3 4 ALA D 85 ASN D 92 -1 N ALA D 85 O LEU D 107 SHEET 4 AA3 4 LEU D 99 PHE D 101 -1 O ILE D 100 N VAL D 91 SHEET 1 AA4 3 VAL D 153 ILE D 155 0 SHEET 2 AA4 3 PHE D 168 SER D 177 -1 O TRP D 176 N TYR D 154 SHEET 3 AA4 3 CYS D 159 MET D 163 -1 N MET D 163 O PHE D 168 SHEET 1 AA5 5 VAL D 153 ILE D 155 0 SHEET 2 AA5 5 PHE D 168 SER D 177 -1 O TRP D 176 N TYR D 154 SHEET 3 AA5 5 SER D 132 THR D 137 -1 N CYS D 134 O ALA D 175 SHEET 4 AA5 5 ALA D 119 ARG D 124 -1 N TYR D 121 O LEU D 135 SHEET 5 AA5 5 GLU D 195 ASP D 196 1 O GLU D 195 N VAL D 120 SHEET 1 AA6 4 ALA E 3 SER E 5 0 SHEET 2 AA6 4 VAL E 17 ASN E 22 -1 O ASN E 22 N ALA E 3 SHEET 3 AA6 4 SER E 73 ILE E 77 -1 O SER E 73 N CYS E 21 SHEET 4 AA6 4 PHE E 63 GLU E 66 -1 N SER E 64 O LYS E 76 SHEET 1 AA7 6 TYR E 8 GLU E 12 0 SHEET 2 AA7 6 THR E 104 THR E 109 1 O ARG E 105 N LYS E 9 SHEET 3 AA7 6 ALA E 86 SER E 93 -1 N ALA E 86 O LEU E 106 SHEET 4 AA7 6 THR E 29 GLN E 35 -1 N TYR E 31 O ALA E 91 SHEET 5 AA7 6 LYS E 42 GLN E 48 -1 O PHE E 47 N LEU E 30 SHEET 6 AA7 6 GLY E 51 ASP E 54 -1 O GLY E 51 N GLN E 48 SHEET 1 AA8 4 TYR E 8 GLU E 12 0 SHEET 2 AA8 4 THR E 104 THR E 109 1 O ARG E 105 N LYS E 9 SHEET 3 AA8 4 ALA E 86 SER E 93 -1 N ALA E 86 O LEU E 106 SHEET 4 AA8 4 TYR E 99 PHE E 100 -1 O TYR E 99 N SER E 92 SHEET 1 AA9 4 GLU E 119 PHE E 123 0 SHEET 2 AA9 4 LYS E 135 PHE E 145 -1 O VAL E 139 N PHE E 123 SHEET 3 AA9 4 TYR E 183 SER E 192 -1 O SER E 187 N CYS E 140 SHEET 4 AA9 4 VAL E 165 THR E 167 -1 N CYS E 166 O ARG E 188 SHEET 1 AB1 4 GLU E 119 PHE E 123 0 SHEET 2 AB1 4 LYS E 135 PHE E 145 -1 O VAL E 139 N PHE E 123 SHEET 3 AB1 4 TYR E 183 SER E 192 -1 O SER E 187 N CYS E 140 SHEET 4 AB1 4 LEU E 172 LYS E 173 -1 N LEU E 172 O ALA E 184 SHEET 1 AB2 4 GLU E 160 VAL E 161 0 SHEET 2 AB2 4 VAL E 150 VAL E 156 -1 N TRP E 154 O VAL E 161 SHEET 3 AB2 4 HIS E 202 PHE E 209 -1 O GLN E 206 N SER E 153 SHEET 4 AB2 4 GLN E 228 TRP E 235 -1 O ALA E 234 N PHE E 203 SHEET 1 AB3 5 VAL A 5 GLN A 7 0 SHEET 2 AB3 5 VAL A 20 TYR A 26 -1 O THR A 25 N GLU A 6 SHEET 3 AB3 5 TYR A 71 ILE A 76 -1 O LEU A 74 N PHE A 22 SHEET 4 AB3 5 PHE A 61 ASN A 66 -1 N THR A 62 O LEU A 75 SHEET 5 AB3 5 ASN A 56 ASP A 58 -1 N ASP A 58 O PHE A 61 SHEET 1 AB4 5 PHE A 12 PRO A 15 0 SHEET 2 AB4 5 THR A 105 ARG A 110 1 O ARG A 106 N PHE A 12 SHEET 3 AB4 5 ALA A 85 ASN A 92 -1 N TYR A 87 O THR A 105 SHEET 4 AB4 5 PHE A 34 GLN A 39 -1 N GLN A 39 O THR A 86 SHEET 5 AB4 5 LYS A 46 SER A 50 -1 O LYS A 46 N ARG A 38 SHEET 1 AB5 4 PHE A 12 PRO A 15 0 SHEET 2 AB5 4 THR A 105 ARG A 110 1 O ARG A 106 N PHE A 12 SHEET 3 AB5 4 ALA A 85 ASN A 92 -1 N TYR A 87 O THR A 105 SHEET 4 AB5 4 LEU A 99 PHE A 101 -1 O ILE A 100 N VAL A 91 SHEET 1 AB6 4 ALA A 119 ARG A 124 0 SHEET 2 AB6 4 SER A 132 THR A 137 -1 O LEU A 135 N TYR A 121 SHEET 3 AB6 4 PHE A 168 SER A 177 -1 O ALA A 173 N PHE A 136 SHEET 4 AB6 4 VAL A 153 ILE A 155 -1 N TYR A 154 O TRP A 176 SHEET 1 AB7 4 ALA A 119 ARG A 124 0 SHEET 2 AB7 4 SER A 132 THR A 137 -1 O LEU A 135 N TYR A 121 SHEET 3 AB7 4 PHE A 168 SER A 177 -1 O ALA A 173 N PHE A 136 SHEET 4 AB7 4 CYS A 159 MET A 163 -1 N MET A 163 O PHE A 168 SHEET 1 AB8 4 ALA B 3 SER B 5 0 SHEET 2 AB8 4 VAL B 17 ASN B 22 -1 O TRP B 20 N SER B 5 SHEET 3 AB8 4 SER B 73 ILE B 77 -1 O SER B 73 N CYS B 21 SHEET 4 AB8 4 PHE B 63 GLU B 66 -1 N SER B 64 O LYS B 76 SHEET 1 AB9 6 TYR B 8 GLU B 12 0 SHEET 2 AB9 6 THR B 104 THR B 109 1 O ARG B 105 N LYS B 9 SHEET 3 AB9 6 ALA B 86 SER B 93 -1 N ALA B 86 O LEU B 106 SHEET 4 AB9 6 THR B 29 GLN B 35 -1 N TYR B 31 O ALA B 91 SHEET 5 AB9 6 LYS B 42 GLN B 48 -1 O PHE B 47 N LEU B 30 SHEET 6 AB9 6 GLY B 51 ASP B 54 -1 O VAL B 53 N GLN B 46 SHEET 1 AC1 4 TYR B 8 GLU B 12 0 SHEET 2 AC1 4 THR B 104 THR B 109 1 O ARG B 105 N LYS B 9 SHEET 3 AC1 4 ALA B 86 SER B 93 -1 N ALA B 86 O LEU B 106 SHEET 4 AC1 4 GLN B 98 PHE B 100 -1 O TYR B 99 N SER B 92 SHEET 1 AC2 4 GLU B 119 PHE B 123 0 SHEET 2 AC2 4 LYS B 135 PHE B 145 -1 O VAL B 139 N PHE B 123 SHEET 3 AC2 4 TYR B 183 SER B 192 -1 O LEU B 189 N LEU B 138 SHEET 4 AC2 4 VAL B 165 THR B 167 -1 N CYS B 166 O ARG B 188 SHEET 1 AC3 4 GLU B 119 PHE B 123 0 SHEET 2 AC3 4 LYS B 135 PHE B 145 -1 O VAL B 139 N PHE B 123 SHEET 3 AC3 4 TYR B 183 SER B 192 -1 O LEU B 189 N LEU B 138 SHEET 4 AC3 4 LEU B 172 LYS B 173 -1 N LEU B 172 O ALA B 184 SHEET 1 AC4 4 LYS B 159 VAL B 161 0 SHEET 2 AC4 4 VAL B 150 VAL B 156 -1 N VAL B 156 O LYS B 159 SHEET 3 AC4 4 HIS B 202 PHE B 209 -1 O GLN B 206 N SER B 153 SHEET 4 AC4 4 GLN B 228 TRP B 235 -1 O GLN B 228 N PHE B 209 SSBOND 1 CYS D 24 CYS D 89 1555 1555 2.03 SSBOND 2 CYS D 134 CYS D 184 1555 1555 2.04 SSBOND 3 CYS D 159 CYS E 166 1555 1555 2.05 SSBOND 4 CYS E 21 CYS E 90 1555 1555 2.02 SSBOND 5 CYS E 140 CYS E 205 1555 1555 2.02 SSBOND 6 CYS A 24 CYS A 89 1555 1555 2.05 SSBOND 7 CYS A 134 CYS A 184 1555 1555 2.04 SSBOND 8 CYS A 159 CYS B 166 1555 1555 2.05 SSBOND 9 CYS B 21 CYS B 90 1555 1555 2.01 SSBOND 10 CYS B 140 CYS B 205 1555 1555 2.02 CISPEP 1 GLY D 10 PRO D 11 0 -1.73 CISPEP 2 SER E 5 PRO E 6 0 -6.90 CISPEP 3 GLN E 78 PRO E 79 0 -7.50 CISPEP 4 TYR E 146 PRO E 147 0 -0.27 CISPEP 5 GLY A 10 PRO A 11 0 -12.41 CISPEP 6 SER B 5 PRO B 6 0 -4.90 CISPEP 7 GLN B 78 PRO B 79 0 -7.73 CISPEP 8 TYR B 146 PRO B 147 0 -4.68 CRYST1 81.049 81.175 315.105 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003174 0.00000 CONECT 155 681 CONECT 681 155 CONECT 1029 1422 CONECT 1228 2833 CONECT 1422 1029 CONECT 1694 2238 CONECT 2238 1694 CONECT 2626 3157 CONECT 2833 1228 CONECT 3157 2626 CONECT 3580 4106 CONECT 4106 3580 CONECT 4454 4847 CONECT 4653 6258 CONECT 4847 4454 CONECT 5119 5663 CONECT 5663 5119 CONECT 6051 6582 CONECT 6258 4653 CONECT 6582 6051 MASTER 371 0 0 14 96 0 0 6 7161 4 20 70 END