HEADER PROTEIN BINDING 06-MAR-21 7EA7 TITLE CRYSTAL STRUCTURE OF NAP1 LIR IN COMPLEX WITH GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GABA(A) RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NAP1_LIR MOTIF; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIR, COMPLEX, GABARAP, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.FU,L.PAN REVDAT 2 29-NOV-23 7EA7 1 REMARK REVDAT 1 22-DEC-21 7EA7 0 JRNL AUTH T.FU,M.ZHANG,Z.ZHOU,P.WU,C.PENG,Y.WANG,X.GONG,Y.LI,Y.WANG, JRNL AUTH 2 X.XU,M.LI,L.SHEN,L.PAN JRNL TITL STRUCTURAL AND BIOCHEMICAL ADVANCES ON THE RECRUITMENT OF JRNL TITL 2 THE AUTOPHAGY-INITIATING ULK AND TBK1 COMPLEXES BY AUTOPHAGY JRNL TITL 3 RECEPTOR NDP52. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34389544 JRNL DOI 10.1126/SCIADV.ABI6582 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8400 - 3.8800 1.00 2594 129 0.1797 0.2361 REMARK 3 2 3.8800 - 3.0800 1.00 2501 108 0.2573 0.3226 REMARK 3 3 3.0800 - 2.6900 1.00 2422 135 0.3111 0.3776 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.459 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.952 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2050 REMARK 3 ANGLE : 0.698 2759 REMARK 3 CHIRALITY : 0.048 286 REMARK 3 PLANARITY : 0.003 355 REMARK 3 DIHEDRAL : 15.614 1243 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8007 -9.9755 4.3725 REMARK 3 T TENSOR REMARK 3 T11: 1.0669 T22: 0.8301 REMARK 3 T33: 1.0598 T12: -0.0043 REMARK 3 T13: -0.0740 T23: 0.1796 REMARK 3 L TENSOR REMARK 3 L11: 5.8793 L22: 0.6531 REMARK 3 L33: 3.6605 L12: -0.6155 REMARK 3 L13: 1.2867 L23: 1.2906 REMARK 3 S TENSOR REMARK 3 S11: 0.6208 S12: -0.5285 S13: -1.6805 REMARK 3 S21: -0.0895 S22: -1.3187 S23: 1.0467 REMARK 3 S31: 1.3331 S32: -0.5997 S33: 0.0679 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7151 -5.1463 -3.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.7408 T22: 0.7766 REMARK 3 T33: 0.7543 T12: 0.0960 REMARK 3 T13: -0.0930 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 6.9892 L22: 5.9590 REMARK 3 L33: 4.7396 L12: -0.3727 REMARK 3 L13: 0.1772 L23: -0.1019 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.4623 S13: -1.2232 REMARK 3 S21: -0.4301 S22: 0.0932 S23: -0.4490 REMARK 3 S31: 1.0974 S32: 1.0392 S33: -0.0660 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1391 -1.1563 0.8285 REMARK 3 T TENSOR REMARK 3 T11: 0.7670 T22: 1.0154 REMARK 3 T33: 0.9352 T12: -0.0409 REMARK 3 T13: -0.0900 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 8.5138 L22: 0.6259 REMARK 3 L33: 0.4678 L12: -1.2167 REMARK 3 L13: 0.3963 L23: 0.0237 REMARK 3 S TENSOR REMARK 3 S11: -0.6362 S12: 0.8593 S13: -1.3799 REMARK 3 S21: 0.6020 S22: -0.1780 S23: 0.4786 REMARK 3 S31: 1.1079 S32: -0.5369 S33: -0.0126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9679 6.9343 -6.4702 REMARK 3 T TENSOR REMARK 3 T11: 1.2949 T22: 0.7107 REMARK 3 T33: 0.6396 T12: 0.0290 REMARK 3 T13: 0.0714 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 5.4084 L22: 2.4052 REMARK 3 L33: 2.4566 L12: -0.7515 REMARK 3 L13: -2.0846 L23: 0.7608 REMARK 3 S TENSOR REMARK 3 S11: 1.1325 S12: 0.1509 S13: 0.5845 REMARK 3 S21: -0.1867 S22: -0.2805 S23: 0.4003 REMARK 3 S31: -0.6389 S32: 0.4850 S33: -0.5152 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7069 5.6299 2.6382 REMARK 3 T TENSOR REMARK 3 T11: 0.6563 T22: 0.6489 REMARK 3 T33: 0.6091 T12: -0.1390 REMARK 3 T13: -0.0722 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 9.0632 L22: 4.2566 REMARK 3 L33: 5.3839 L12: -2.9795 REMARK 3 L13: -4.1792 L23: 1.6585 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: -1.0015 S13: 0.4509 REMARK 3 S21: -0.1268 S22: 0.2049 S23: -0.1637 REMARK 3 S31: -0.2654 S32: 0.9082 S33: -0.3604 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4022 5.9522 10.5175 REMARK 3 T TENSOR REMARK 3 T11: 1.2716 T22: 0.8761 REMARK 3 T33: 1.2430 T12: -0.0984 REMARK 3 T13: -0.1977 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.8779 L22: 4.0175 REMARK 3 L33: 4.7947 L12: -2.5328 REMARK 3 L13: -3.3908 L23: 4.1858 REMARK 3 S TENSOR REMARK 3 S11: 0.9883 S12: -1.4780 S13: -0.9504 REMARK 3 S21: 1.7982 S22: 0.9711 S23: 0.3383 REMARK 3 S31: 2.2702 S32: 0.9525 S33: -1.1445 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7583 16.8194 -29.2827 REMARK 3 T TENSOR REMARK 3 T11: 0.6479 T22: 0.9600 REMARK 3 T33: 0.8055 T12: 0.0085 REMARK 3 T13: 0.0061 T23: -0.1247 REMARK 3 L TENSOR REMARK 3 L11: 5.6520 L22: 2.5016 REMARK 3 L33: 5.1812 L12: 0.5546 REMARK 3 L13: -3.3249 L23: -1.9347 REMARK 3 S TENSOR REMARK 3 S11: 0.4960 S12: 1.4345 S13: -0.0994 REMARK 3 S21: -0.0865 S22: 0.0073 S23: -0.2054 REMARK 3 S31: -0.1732 S32: 0.2435 S33: -0.5069 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8900 18.9990 -16.2793 REMARK 3 T TENSOR REMARK 3 T11: 0.7679 T22: 0.8261 REMARK 3 T33: 0.7407 T12: 0.0981 REMARK 3 T13: -0.0139 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 4.5325 L22: 5.7715 REMARK 3 L33: 6.6408 L12: 2.4936 REMARK 3 L13: 0.8911 L23: 3.5794 REMARK 3 S TENSOR REMARK 3 S11: -0.1664 S12: 0.0801 S13: 0.2461 REMARK 3 S21: -0.2653 S22: -0.0909 S23: 1.1929 REMARK 3 S31: -0.7287 S32: -1.2318 S33: 0.1933 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9972 12.4651 -16.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.6248 T22: 0.6891 REMARK 3 T33: 0.7273 T12: -0.0576 REMARK 3 T13: -0.0018 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 7.5702 L22: 4.7042 REMARK 3 L33: 9.8523 L12: 2.3064 REMARK 3 L13: -1.9695 L23: -0.0353 REMARK 3 S TENSOR REMARK 3 S11: 0.3642 S12: 0.0159 S13: -0.7647 REMARK 3 S21: 0.4172 S22: 0.3224 S23: -0.9453 REMARK 3 S31: -0.1551 S32: 0.5483 S33: -0.3772 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1664 10.8481 -24.0225 REMARK 3 T TENSOR REMARK 3 T11: 0.6068 T22: 0.8725 REMARK 3 T33: 0.8327 T12: 0.0588 REMARK 3 T13: -0.0312 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 1.9679 L22: 4.5459 REMARK 3 L33: 3.7407 L12: -0.8786 REMARK 3 L13: 2.1605 L23: 1.5161 REMARK 3 S TENSOR REMARK 3 S11: -0.6464 S12: -0.5573 S13: -0.3833 REMARK 3 S21: -0.2896 S22: 0.5659 S23: -0.1261 REMARK 3 S31: 0.2242 S32: 0.5553 S33: -0.3288 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7283 27.4543 -27.4767 REMARK 3 T TENSOR REMARK 3 T11: 1.6409 T22: 1.2361 REMARK 3 T33: 1.1552 T12: -0.0324 REMARK 3 T13: 0.1108 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 2.5913 L22: 4.8752 REMARK 3 L33: 5.2831 L12: -2.1293 REMARK 3 L13: -3.3273 L23: 4.5111 REMARK 3 S TENSOR REMARK 3 S11: -1.1874 S12: -0.2299 S13: -0.2034 REMARK 3 S21: -0.7045 S22: -0.6684 S23: -1.1338 REMARK 3 S31: -0.5345 S32: -1.1712 S33: 0.0841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 36.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7BV4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M SODIUM NITRATE, 0.3 M SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.3 M AMMONIUM SULFATE, 0.1 M BICINE-TRIS PH REMARK 280 8.5, 25% V/V MPD, 25% PEG1000, 25% W/V PEG3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.54800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.67950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.79200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.67950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.54800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.79200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 117 REMARK 465 TYR B 115 REMARK 465 GLY B 116 REMARK 465 LEU B 117 REMARK 465 GLU C 6 REMARK 465 GLU C 15 REMARK 465 LYS C 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 43 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 20 CE NZ REMARK 480 LYS A 66 NZ REMARK 480 LYS B 13 CD CE NZ REMARK 480 LYS B 20 CE NZ REMARK 480 LYS B 66 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 74.29 -116.70 REMARK 500 SER A 88 62.81 -108.33 REMARK 500 TYR B 25 73.62 41.80 REMARK 500 HIS B 69 48.51 72.52 REMARK 500 ASN B 82 -5.50 66.96 REMARK 500 ASP B 102 4.59 -67.20 REMARK 500 SER B 113 36.74 -149.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EA7 A 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 7EA7 B 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 7EA7 C 6 16 PDB 7EA7 7EA7 6 16 SEQRES 1 A 117 MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE GLU LYS SEQRES 2 A 117 ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 A 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 A 117 ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU VAL PRO SEQRES 5 A 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 A 117 LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU PHE PHE SEQRES 7 A 117 PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA THR MET SEQRES 8 A 117 GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP PHE PHE SEQRES 9 A 117 LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 B 117 MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE GLU LYS SEQRES 2 B 117 ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 B 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 B 117 ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU VAL PRO SEQRES 5 B 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 B 117 LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU PHE PHE SEQRES 7 B 117 PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA THR MET SEQRES 8 B 117 GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP PHE PHE SEQRES 9 B 117 LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 C 11 GLU ASP ASP ILE CYS ILE LEU ASN HIS GLU LYS FORMUL 4 HOH *2(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 HIS A 69 1 14 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 PRO B 10 LYS B 24 1 15 HELIX 6 AA6 THR B 56 HIS B 69 1 14 HELIX 7 AA7 THR B 90 HIS B 99 1 10 SHEET 1 AA1 4 LYS A 48 PRO A 52 0 SHEET 2 AA1 4 ARG A 28 LYS A 35 -1 N VAL A 31 O TYR A 49 SHEET 3 AA1 4 LEU A 105 SER A 110 1 O LEU A 105 N ILE A 32 SHEET 4 AA1 4 PHE A 77 PHE A 79 -1 N PHE A 79 O ALA A 108 SHEET 1 AA2 5 PHE B 77 PHE B 79 0 SHEET 2 AA2 5 LEU B 105 SER B 110 -1 O SER B 110 N PHE B 77 SHEET 3 AA2 5 ARG B 28 LYS B 35 1 N ILE B 32 O LEU B 105 SHEET 4 AA2 5 LYS B 48 PRO B 52 -1 O TYR B 49 N VAL B 31 SHEET 5 AA2 5 CYS C 10 ILE C 11 1 O CYS C 10 N LEU B 50 CRYST1 35.096 73.584 103.359 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009675 0.00000