HEADER RNA BINDING PROTEIN 08-MAR-21 7EB1 TITLE SOLUTION NMR STRUCTURE OF THE RRM DOMAIN OF RNA BINDING PROTEIN RBM3 TITLE 2 FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-BINDING MOTIF PROTEIN 3,RNPL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM3, RNPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RNA RECOGNITION MOTIF (RRM), RNA BINDING MOTIF 3 (RBM3), RNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BORAL,S.ROY,A.J.BASAK,S.MAITI,W.LEE,S.DE REVDAT 4 15-MAY-24 7EB1 1 REMARK REVDAT 3 14-JUN-23 7EB1 1 REMARK REVDAT 2 25-MAY-22 7EB1 1 JRNL REVDAT 1 08-DEC-21 7EB1 0 JRNL AUTH S.ROY,S.BORAL,S.MAITI,T.KUSHWAHA,A.J.BASAK,W.LEE,A.BASAK, JRNL AUTH 2 S.L.GHOLAP,K.K.INAMPUDI,S.DE JRNL TITL STRUCTURAL AND DYNAMIC STUDIES OF THE HUMAN RNA BINDING JRNL TITL 2 PROTEIN RBM3 REVEALS THE MOLECULAR BASIS OF ITS JRNL TITL 3 OLIGOMERIZATION AND RNA RECOGNITION. JRNL REF FEBS J. V. 289 2847 2022 JRNL REFN ISSN 1742-464X JRNL PMID 34837346 JRNL DOI 10.1111/FEBS.16301 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PONDEROSA-C/S, PONDEROSA REMARK 3 AUTHORS : WOONGHEE LEE (PONDEROSA-C/S), LEE, W., STARK, REMARK 3 J.L., AND MARKLEY, J.L. (PONDEROSA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021084. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 15N] RNA BINDING REMARK 210 MOTIF 3 (RBM3) PROTEIN, 93% H2O/ REMARK 210 7% D2O; 0.6 MM [U-100% 13C; U- REMARK 210 100% 15N] RNA BINDING MOTIF 3 REMARK 210 (RBM3) PROTEIN, 93% H2O/7% D2O; REMARK 210 0.7 MM [U-10% 13C; U-100% 15N] REMARK 210 RNA BINDING MOTIF 3 (RBM3) REMARK 210 PROTEIN, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D C(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N TOCSY; 3D 1H-13C NOESY; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 71 104.29 -54.00 REMARK 500 2 SER A 71 104.04 -55.37 REMARK 500 3 ASN A 68 109.88 -49.36 REMARK 500 3 SER A 71 104.65 -53.93 REMARK 500 4 ASP A 18 -168.59 -129.77 REMARK 500 4 ASN A 68 108.44 -51.50 REMARK 500 4 SER A 71 105.94 -53.61 REMARK 500 5 SER A 71 103.76 -53.67 REMARK 500 6 ASN A 68 109.70 -48.30 REMARK 500 6 SER A 71 104.97 -53.39 REMARK 500 7 GLU A 34 130.12 -170.83 REMARK 500 7 SER A 71 105.30 -56.34 REMARK 500 8 ASP A 18 -164.03 -128.89 REMARK 500 8 ASN A 68 108.99 -48.69 REMARK 500 8 SER A 71 104.88 -54.05 REMARK 500 9 SER A 71 104.10 -53.47 REMARK 500 10 SER A 3 -66.90 -164.78 REMARK 500 10 GLU A 5 -43.32 -147.68 REMARK 500 10 SER A 71 105.48 -54.37 REMARK 500 11 SER A 71 104.49 -53.81 REMARK 500 12 GLU A 4 11.18 -162.85 REMARK 500 12 ASN A 68 107.26 -50.09 REMARK 500 12 SER A 71 105.53 -52.13 REMARK 500 13 GLU A 5 -36.29 -153.44 REMARK 500 13 SER A 71 104.88 -51.82 REMARK 500 14 GLU A 4 -53.69 -126.45 REMARK 500 14 GLU A 5 -34.92 -178.79 REMARK 500 14 SER A 71 104.51 -55.71 REMARK 500 15 GLU A 4 17.48 -157.25 REMARK 500 15 SER A 71 105.93 -53.89 REMARK 500 16 SER A 71 104.95 -56.54 REMARK 500 17 ASN A 68 108.83 -51.82 REMARK 500 17 SER A 71 104.39 -53.73 REMARK 500 18 ASN A 68 109.35 -50.60 REMARK 500 18 SER A 71 103.87 -53.37 REMARK 500 19 SER A 71 102.20 -54.92 REMARK 500 20 SER A 71 105.96 -55.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50804 RELATED DB: BMRB DBREF 7EB1 A 1 84 UNP P98179 RBM3_HUMAN 1 84 SEQRES 1 A 84 MET SER SER GLU GLU GLY LYS LEU PHE VAL GLY GLY LEU SEQRES 2 A 84 ASN PHE ASN THR ASP GLU GLN ALA LEU GLU ASP HIS PHE SEQRES 3 A 84 SER SER PHE GLY PRO ILE SER GLU VAL VAL VAL VAL LYS SEQRES 4 A 84 ASP ARG GLU THR GLN ARG SER ARG GLY PHE GLY PHE ILE SEQRES 5 A 84 THR PHE THR ASN PRO GLU HIS ALA SER VAL ALA MET ARG SEQRES 6 A 84 ALA MET ASN GLY GLU SER LEU ASP GLY ARG GLN ILE ARG SEQRES 7 A 84 VAL ASP HIS ALA GLY LYS HELIX 1 AA1 ASP A 18 GLY A 30 1 13 HELIX 2 AA2 ASN A 56 ASN A 68 1 13 SHEET 1 AA1 5 ILE A 32 LYS A 39 0 SHEET 2 AA1 5 SER A 46 PHE A 54 -1 O PHE A 51 N VAL A 36 SHEET 3 AA1 5 LEU A 8 GLY A 11 -1 N LEU A 8 O ILE A 52 SHEET 4 AA1 5 ARG A 75 HIS A 81 -1 O ASP A 80 N PHE A 9 SHEET 5 AA1 5 GLU A 70 LEU A 72 -1 N LEU A 72 O ARG A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1