HEADER SIGNALING PROTEIN 09-MAR-21 7EBD TITLE BACTERIAL STING IN COMPLEX WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIR-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STING; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PREVOTELLA CORPORIS; SOURCE 3 ORGANISM_TAXID: 28128; SOURCE 4 GENE: HMPREF3226_02659; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SECOND MESSENGER, COMPLEX, CYCLIC DINUCLEOTIDE, ANTIVIRAL PATHWAY, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.-P.KO,Y.-C.WANG,C.-S.YANG,M.-H.HOU,Y.CHEN REVDAT 2 19-JAN-22 7EBD 1 JRNL REVDAT 1 15-SEP-21 7EBD 0 JRNL AUTH T.-P.KO,Y.-C.WANG,C.-S.YANG,M.-H.HOU,C.-J.CHEN,Y.-F.CHIU, JRNL AUTH 2 Y.CHEN JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL IMPLICATION OF BACTERIAL JRNL TITL 2 STING. JRNL REF NAT COMMUN V. 13 26 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35013136 JRNL DOI 10.1038/S41467-021-26583-3 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.3400 - 2.2500 0.98 1385 144 0.2748 0.3026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.777 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2634 REMARK 3 ANGLE : 0.549 3564 REMARK 3 CHIRALITY : 0.040 404 REMARK 3 PLANARITY : 0.003 446 REMARK 3 DIHEDRAL : 16.834 1576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4937 20.8753 -7.7943 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.0751 REMARK 3 T33: 0.1169 T12: -0.0207 REMARK 3 T13: 0.0328 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4621 L22: 0.1123 REMARK 3 L33: 0.3155 L12: -0.1078 REMARK 3 L13: 0.2869 L23: 0.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: 0.2542 S13: -0.0688 REMARK 3 S21: -0.0275 S22: -0.0882 S23: 0.1341 REMARK 3 S31: 0.0260 S32: 0.1647 S33: -0.2188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1797 40.7356 -10.2954 REMARK 3 T TENSOR REMARK 3 T11: 0.4490 T22: 0.2168 REMARK 3 T33: 0.4140 T12: 0.0521 REMARK 3 T13: -0.0524 T23: 0.0845 REMARK 3 L TENSOR REMARK 3 L11: 0.0127 L22: 0.1081 REMARK 3 L33: 0.0467 L12: -0.0172 REMARK 3 L13: 0.0024 L23: -0.0719 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.0141 S13: 0.1214 REMARK 3 S21: -0.0804 S22: -0.0546 S23: -0.0108 REMARK 3 S31: -0.0069 S32: -0.2271 S33: -0.0152 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6686 21.2759 3.3422 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1790 REMARK 3 T33: 0.1530 T12: -0.0224 REMARK 3 T13: -0.0082 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.0392 L22: 0.0607 REMARK 3 L33: 0.0306 L12: -0.0061 REMARK 3 L13: 0.0089 L23: 0.0553 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.1074 S13: 0.1028 REMARK 3 S21: 0.0532 S22: -0.0090 S23: -0.1353 REMARK 3 S31: 0.0378 S32: 0.0361 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6963 26.9125 10.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.1804 REMARK 3 T33: 0.0686 T12: -0.0524 REMARK 3 T13: -0.0283 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0577 L22: 0.0676 REMARK 3 L33: 0.1499 L12: -0.0628 REMARK 3 L13: -0.0087 L23: 0.0252 REMARK 3 S TENSOR REMARK 3 S11: -0.1799 S12: -0.0035 S13: -0.0044 REMARK 3 S21: 0.1706 S22: -0.0651 S23: 0.0240 REMARK 3 S31: -0.1450 S32: -0.0705 S33: -0.1740 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0956 34.9868 0.7927 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.2323 REMARK 3 T33: 0.3665 T12: -0.0011 REMARK 3 T13: -0.0111 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0147 L22: 0.0154 REMARK 3 L33: 0.0051 L12: 0.0083 REMARK 3 L13: -0.0086 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: 0.0192 S13: -0.0602 REMARK 3 S21: -0.0927 S22: -0.0158 S23: -0.0907 REMARK 3 S31: -0.1193 S32: 0.0049 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5022 31.9530 -3.8923 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1035 REMARK 3 T33: 0.2083 T12: -0.0121 REMARK 3 T13: -0.0333 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.0906 L22: 0.1125 REMARK 3 L33: 0.4037 L12: -0.0425 REMARK 3 L13: 0.0223 L23: 0.2084 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: -0.2038 S13: 0.2078 REMARK 3 S21: 0.1152 S22: -0.0040 S23: 0.0247 REMARK 3 S31: -0.3184 S32: -0.2390 S33: -0.0456 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5505 11.0698 8.9562 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1603 REMARK 3 T33: 0.1299 T12: 0.0395 REMARK 3 T13: -0.0135 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.0053 REMARK 3 L33: 0.0144 L12: 0.0044 REMARK 3 L13: 0.0024 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: -0.1450 S13: -0.0014 REMARK 3 S21: 0.0129 S22: 0.0615 S23: -0.0429 REMARK 3 S31: -0.0177 S32: -0.0207 S33: -0.0084 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9786 4.5655 18.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.8973 T22: 0.7540 REMARK 3 T33: 0.4150 T12: -0.0018 REMARK 3 T13: -0.0618 T23: 0.1939 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.0001 REMARK 3 L33: 0.0010 L12: 0.0014 REMARK 3 L13: 0.0006 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.0839 S13: 0.0581 REMARK 3 S21: 0.0162 S22: -0.0198 S23: -0.0214 REMARK 3 S31: 0.0382 S32: 0.0425 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8247 9.2696 0.3751 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: -0.0127 REMARK 3 T33: 0.0064 T12: 0.2319 REMARK 3 T13: 0.2795 T23: -0.2141 REMARK 3 L TENSOR REMARK 3 L11: 0.0355 L22: 0.0831 REMARK 3 L33: 0.0316 L12: 0.0063 REMARK 3 L13: 0.0201 L23: 0.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.3100 S13: -0.1227 REMARK 3 S21: 0.2489 S22: 0.1205 S23: -0.2122 REMARK 3 S31: 0.1817 S32: 0.2069 S33: 0.0711 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9639 21.0976 -9.4408 REMARK 3 T TENSOR REMARK 3 T11: -0.0763 T22: 0.1506 REMARK 3 T33: -0.0558 T12: -0.1210 REMARK 3 T13: 0.2340 T23: 0.1048 REMARK 3 L TENSOR REMARK 3 L11: 0.1424 L22: 0.0911 REMARK 3 L33: 0.0818 L12: 0.0239 REMARK 3 L13: 0.0476 L23: 0.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.0727 S13: -0.1643 REMARK 3 S21: -0.2939 S22: 0.2106 S23: -0.1287 REMARK 3 S31: -0.0486 S32: 0.0796 S33: 0.2003 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4307 20.6002 7.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.1206 REMARK 3 T33: 0.1340 T12: -0.0135 REMARK 3 T13: 0.0156 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1862 L22: 0.0366 REMARK 3 L33: 0.2069 L12: -0.0438 REMARK 3 L13: 0.1165 L23: -0.0722 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: -0.1201 S13: -0.0539 REMARK 3 S21: 0.0601 S22: 0.0531 S23: -0.0697 REMARK 3 S31: -0.0008 S32: -0.0157 S33: -0.0695 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1296 39.9971 9.9075 REMARK 3 T TENSOR REMARK 3 T11: 0.5769 T22: 0.2758 REMARK 3 T33: 0.4469 T12: -0.0428 REMARK 3 T13: -0.0446 T23: -0.1646 REMARK 3 L TENSOR REMARK 3 L11: 0.0080 L22: 0.1031 REMARK 3 L33: 0.1525 L12: 0.0150 REMARK 3 L13: -0.0221 L23: -0.0936 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: -0.0223 S13: -0.0725 REMARK 3 S21: -0.0601 S22: -0.1420 S23: 0.0908 REMARK 3 S31: -0.2360 S32: 0.1577 S33: -0.0068 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1528 20.5722 -3.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.1425 REMARK 3 T33: 0.1126 T12: 0.0060 REMARK 3 T13: -0.0039 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.0214 L22: 0.0120 REMARK 3 L33: 0.1618 L12: -0.0041 REMARK 3 L13: 0.0214 L23: -0.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0037 S13: -0.0361 REMARK 3 S21: -0.1598 S22: -0.2025 S23: 0.0804 REMARK 3 S31: 0.1622 S32: 0.1285 S33: -0.0068 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 210 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7935 26.3001 -10.5912 REMARK 3 T TENSOR REMARK 3 T11: 0.3624 T22: 0.3617 REMARK 3 T33: 0.1032 T12: 0.0338 REMARK 3 T13: -0.0538 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.0395 L22: 0.0324 REMARK 3 L33: 0.0105 L12: 0.0333 REMARK 3 L13: -0.0159 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.1444 S12: 0.1749 S13: -0.0202 REMARK 3 S21: -0.2181 S22: -0.0661 S23: -0.0298 REMARK 3 S31: -0.0511 S32: 0.1333 S33: -0.0272 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1396 34.3279 -0.9971 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2346 REMARK 3 T33: 0.3808 T12: -0.0223 REMARK 3 T13: -0.0350 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.0218 L22: 0.0163 REMARK 3 L33: 0.0120 L12: 0.0007 REMARK 3 L13: -0.0147 L23: 0.0174 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.1060 S13: -0.0439 REMARK 3 S21: 0.1301 S22: -0.1130 S23: 0.1413 REMARK 3 S31: -0.1543 S32: 0.0051 S33: 0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8705 31.4728 3.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1954 REMARK 3 T33: 0.2003 T12: -0.0496 REMARK 3 T13: -0.0036 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.0607 L22: 0.1028 REMARK 3 L33: 0.0483 L12: 0.0833 REMARK 3 L13: -0.0639 L23: -0.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: 0.0751 S13: 0.3202 REMARK 3 S21: 0.0214 S22: -0.0170 S23: -0.1851 REMARK 3 S31: -0.1714 S32: 0.2104 S33: 0.0054 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7228 12.0767 -8.8197 REMARK 3 T TENSOR REMARK 3 T11: 0.0875 T22: 0.1226 REMARK 3 T33: 0.0444 T12: -0.1222 REMARK 3 T13: -0.0464 T23: -0.2364 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: 0.0065 REMARK 3 L33: 0.0444 L12: -0.0181 REMARK 3 L13: -0.0337 L23: 0.0183 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 0.2178 S13: -0.0958 REMARK 3 S21: -0.0803 S22: -0.0029 S23: 0.0175 REMARK 3 S31: 0.0286 S32: -0.0370 S33: -0.0548 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4431 3.4989 -17.5563 REMARK 3 T TENSOR REMARK 3 T11: 1.3733 T22: 1.3453 REMARK 3 T33: 1.2638 T12: 0.3254 REMARK 3 T13: -0.0454 T23: 0.2325 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: 0.0010 REMARK 3 L33: -0.0006 L12: -0.0036 REMARK 3 L13: -0.0011 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0111 S13: -0.0030 REMARK 3 S21: -0.0438 S22: -0.0007 S23: -0.0674 REMARK 3 S31: 0.0577 S32: -0.0009 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5489 8.6208 -0.7418 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.0507 REMARK 3 T33: 0.2960 T12: -0.1145 REMARK 3 T13: 0.0574 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.0466 L22: 0.0318 REMARK 3 L33: 0.0545 L12: -0.0049 REMARK 3 L13: 0.0451 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: 0.3556 S13: -0.3168 REMARK 3 S21: -0.1038 S22: -0.0043 S23: 0.2236 REMARK 3 S31: 0.0433 S32: -0.1368 S33: 0.0009 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8125 20.3067 9.3334 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.1922 REMARK 3 T33: -0.2082 T12: 0.0128 REMARK 3 T13: 0.0947 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.0205 L22: 0.2851 REMARK 3 L33: 0.0327 L12: -0.0155 REMARK 3 L13: -0.0180 L23: -0.0278 REMARK 3 S TENSOR REMARK 3 S11: -0.1335 S12: -0.0226 S13: -0.0763 REMARK 3 S21: 0.2792 S22: -0.0102 S23: 0.0716 REMARK 3 S31: -0.0341 S32: -0.0752 S33: 0.0100 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97836 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE TRIHYDRATE PH REMARK 280 6.5, 0.2M SODIUM ACETATE TRIHYDRATE, 18% W/V POLYETHYLENE GLYCOL REMARK 280 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.26700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.49750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.26700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.49750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 624 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 SER B 154 REMARK 465 GLY B 155 REMARK 465 GLY B 156 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 171 -60.30 -151.63 REMARK 500 PHE B 171 -59.81 -151.78 REMARK 500 ASP B 265 1.65 -69.72 REMARK 500 TYR B 267 -31.61 -133.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 618 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 619 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 625 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH B 629 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 630 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 631 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B 632 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH B 633 DISTANCE = 7.38 ANGSTROMS DBREF1 7EBD A 158 311 UNP A0A133PTK7_9BACT DBREF2 7EBD A A0A133PTK7 158 311 DBREF1 7EBD B 158 311 UNP A0A133PTK7_9BACT DBREF2 7EBD B A0A133PTK7 158 311 SEQADV 7EBD SER A 154 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLY A 155 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLY A 156 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLY A 157 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD ARG A 312 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLN A 313 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD ALA A 314 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD SER B 154 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLY B 155 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLY B 156 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLY B 157 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD ARG B 312 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD GLN B 313 UNP A0A133PTK EXPRESSION TAG SEQADV 7EBD ALA B 314 UNP A0A133PTK EXPRESSION TAG SEQRES 1 A 161 SER GLY GLY GLY LEU PRO SER THR VAL ILE ALA ILE SER SEQRES 2 A 161 TYR PHE GLU GLY PHE VAL LYS LEU ALA ALA GLU TRP ILE SEQRES 3 A 161 VAL THR GLU MSE PRO THR THR GLU ILE ASP GLY LYS THR SEQRES 4 A 161 TYR THR SER GLY LYS LEU TYR ILE LYS MSE PRO GLU THR SEQRES 5 A 161 LEU ASP THR ASP ILE LYS LYS SER ALA MSE LEU PHE TYR SEQRES 6 A 161 LYS LYS GLN GLY LEU ASN GLU THR GLN MSE SER THR ASN SEQRES 7 A 161 HIS ARG ASN TYR PRO ILE HIS ILE VAL SER LYS GLU GLU SEQRES 8 A 161 GLY ASP THR LEU GLU VAL TYR ASP MSE PRO THR ILE LEU SEQRES 9 A 161 SER GLY ILE ASP LYS ALA ILE ASP MSE TYR PHE ARG VAL SEQRES 10 A 161 GLY HIS ILE GLY LYS THR THR GLU GLN GLN LEU ALA GLU SEQRES 11 A 161 ASP ASN GLU MSE ASN ASN PHE LYS ARG VAL LEU GLN LEU SEQRES 12 A 161 LEU ILE ASN GLU ASP SER PHE CYS ARG GLU CYS VAL GLU SEQRES 13 A 161 ILE LEU ARG GLN ALA SEQRES 1 B 161 SER GLY GLY GLY LEU PRO SER THR VAL ILE ALA ILE SER SEQRES 2 B 161 TYR PHE GLU GLY PHE VAL LYS LEU ALA ALA GLU TRP ILE SEQRES 3 B 161 VAL THR GLU MSE PRO THR THR GLU ILE ASP GLY LYS THR SEQRES 4 B 161 TYR THR SER GLY LYS LEU TYR ILE LYS MSE PRO GLU THR SEQRES 5 B 161 LEU ASP THR ASP ILE LYS LYS SER ALA MSE LEU PHE TYR SEQRES 6 B 161 LYS LYS GLN GLY LEU ASN GLU THR GLN MSE SER THR ASN SEQRES 7 B 161 HIS ARG ASN TYR PRO ILE HIS ILE VAL SER LYS GLU GLU SEQRES 8 B 161 GLY ASP THR LEU GLU VAL TYR ASP MSE PRO THR ILE LEU SEQRES 9 B 161 SER GLY ILE ASP LYS ALA ILE ASP MSE TYR PHE ARG VAL SEQRES 10 B 161 GLY HIS ILE GLY LYS THR THR GLU GLN GLN LEU ALA GLU SEQRES 11 B 161 ASP ASN GLU MSE ASN ASN PHE LYS ARG VAL LEU GLN LEU SEQRES 12 B 161 LEU ILE ASN GLU ASP SER PHE CYS ARG GLU CYS VAL GLU SEQRES 13 B 161 ILE LEU ARG GLN ALA MODRES 7EBD MSE A 183 MET MODIFIED RESIDUE MODRES 7EBD MSE A 202 MET MODIFIED RESIDUE MODRES 7EBD MSE A 215 MET MODIFIED RESIDUE MODRES 7EBD MSE A 228 MET MODIFIED RESIDUE MODRES 7EBD MSE A 253 MET MODIFIED RESIDUE MODRES 7EBD MSE A 266 MET MODIFIED RESIDUE MODRES 7EBD MSE A 287 MET MODIFIED RESIDUE MODRES 7EBD MSE B 183 MET MODIFIED RESIDUE MODRES 7EBD MSE B 202 MET MODIFIED RESIDUE MODRES 7EBD MSE B 215 MET MODIFIED RESIDUE MODRES 7EBD MSE B 228 MET MODIFIED RESIDUE MODRES 7EBD MSE B 253 MET MODIFIED RESIDUE MODRES 7EBD MSE B 266 MET MODIFIED RESIDUE MODRES 7EBD MSE B 287 MET MODIFIED RESIDUE HET MSE A 183 8 HET MSE A 202 8 HET MSE A 215 8 HET MSE A 228 8 HET MSE A 253 8 HET MSE A 266 8 HET MSE A 287 8 HET MSE B 183 8 HET MSE B 202 8 HET MSE B 215 8 HET MSE B 228 8 HET MSE B 253 8 HET MSE B 266 8 HET MSE B 287 8 HET ACT A 401 4 HET ACT B 401 4 HET C2E B 402 46 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 C2E C20 H24 N10 O14 P2 FORMUL 6 HOH *259(H2 O) HELIX 1 AA1 LEU A 158 PHE A 171 1 14 HELIX 2 AA2 PHE A 171 GLU A 182 1 12 HELIX 3 AA3 MSE A 183 THR A 185 5 3 HELIX 4 AA4 ASP A 209 GLN A 221 1 13 HELIX 5 AA5 ILE A 256 ASP A 265 1 10 HELIX 6 AA6 THR A 276 GLU A 300 1 25 HELIX 7 AA7 ASP A 301 CYS A 307 1 7 HELIX 8 AA8 LEU B 158 PHE B 171 1 14 HELIX 9 AA9 PHE B 171 GLU B 182 1 12 HELIX 10 AB1 MSE B 183 THR B 186 5 4 HELIX 11 AB2 ASP B 209 GLN B 221 1 13 HELIX 12 AB3 ILE B 256 ASP B 265 1 10 HELIX 13 AB4 THR B 276 GLU B 300 1 25 HELIX 14 AB5 ASP B 301 CYS B 307 1 7 SHEET 1 AA1 2 GLU A 187 ILE A 188 0 SHEET 2 AA1 2 LYS A 191 THR A 192 -1 O LYS A 191 N ILE A 188 SHEET 1 AA2 5 ASN A 224 MSE A 228 0 SHEET 2 AA2 5 ILE A 237 GLU A 244 -1 O ILE A 239 N THR A 226 SHEET 3 AA2 5 THR A 247 ASP A 252 -1 O THR A 247 N GLU A 244 SHEET 4 AA2 5 SER A 195 ILE A 200 1 N LYS A 197 O VAL A 250 SHEET 5 AA2 5 VAL A 308 ILE A 310 1 O GLU A 309 N LEU A 198 SHEET 1 AA3 5 ASN B 224 MSE B 228 0 SHEET 2 AA3 5 ILE B 237 GLU B 244 -1 O ILE B 237 N MSE B 228 SHEET 3 AA3 5 THR B 247 ASP B 252 -1 O THR B 247 N GLU B 244 SHEET 4 AA3 5 SER B 195 ILE B 200 1 N LYS B 197 O VAL B 250 SHEET 5 AA3 5 VAL B 308 ILE B 310 1 O GLU B 309 N ILE B 200 LINK C GLU A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N PRO A 184 1555 1555 1.34 LINK C LYS A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N PRO A 203 1555 1555 1.33 LINK C ALA A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N LEU A 216 1555 1555 1.34 LINK C GLN A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N SER A 229 1555 1555 1.33 LINK C ASP A 252 N MSE A 253 1555 1555 1.33 LINK C MSE A 253 N PRO A 254 1555 1555 1.34 LINK C ASP A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N TYR A 267 1555 1555 1.33 LINK C GLU A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N ASN A 288 1555 1555 1.34 LINK C GLU B 182 N MSE B 183 1555 1555 1.33 LINK C MSE B 183 N PRO B 184 1555 1555 1.34 LINK C LYS B 201 N MSE B 202 1555 1555 1.33 LINK C MSE B 202 N PRO B 203 1555 1555 1.33 LINK C ALA B 214 N MSE B 215 1555 1555 1.33 LINK C MSE B 215 N LEU B 216 1555 1555 1.34 LINK C GLN B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N SER B 229 1555 1555 1.33 LINK C ASP B 252 N MSE B 253 1555 1555 1.33 LINK C MSE B 253 N PRO B 254 1555 1555 1.34 LINK C ASP B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N TYR B 267 1555 1555 1.33 LINK C GLU B 286 N MSE B 287 1555 1555 1.33 LINK C MSE B 287 N ASN B 288 1555 1555 1.34 CRYST1 94.534 86.995 35.223 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028391 0.00000