HEADER HYDROLASE 10-MAR-21 7EBP TITLE THE STRUCTURAL ANALYSIS OF A.MUCINIPHILA SULFATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AKKERMANSIA MUCINIPHILA ATCC BAA-835; SOURCE 3 ORGANISM_TAXID: 349741; SOURCE 4 STRAIN: ATCC BAA-835 / MUC; SOURCE 5 GENE: AMUC_1074; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AKKERMANSIA MUCINIPHILA SULFATASE MUCIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BAO,C.C.LI,X.Y.TANG,Y.B.ZHU,Y.J.SONG,N.L.ZHAO,Q.HUANG,X.Y.MOU, AUTHOR 2 G.H.LUO,T.G.LIU REVDAT 3 29-NOV-23 7EBP 1 REMARK REVDAT 2 12-OCT-22 7EBP 1 JRNL REVDAT 1 30-MAR-22 7EBP 0 JRNL AUTH C.C.LI,X.Y.TANG,Y.B.ZHU,Y.J.SONG,N.L.ZHAO,Q.HUANG,X.Y.MOU, JRNL AUTH 2 G.H.LUO,T.G.LIU,A.P.TONG,H.TANG,R.BAO JRNL TITL STRUCTURAL ANALYSIS OF THE SULFATASE AMAS FROM AKKERMANSIA JRNL TITL 2 MUCINIPHILA. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 1614 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 34866616 JRNL DOI 10.1107/S2059798321010317 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.458 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 111692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.119 REMARK 3 FREE R VALUE TEST SET COUNT : 5718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2800 - 5.5845 0.99 3780 202 0.1738 0.2095 REMARK 3 2 5.5845 - 4.4359 1.00 3600 235 0.1409 0.1394 REMARK 3 3 4.4359 - 3.8761 1.00 3621 179 0.1452 0.1623 REMARK 3 4 3.8761 - 3.5222 1.00 3585 194 0.1637 0.2012 REMARK 3 5 3.5222 - 3.2700 1.00 3577 191 0.1836 0.2169 REMARK 3 6 3.2700 - 3.0773 1.00 3539 187 0.2002 0.2201 REMARK 3 7 3.0773 - 2.9233 1.00 3563 191 0.1976 0.2513 REMARK 3 8 2.9233 - 2.7961 1.00 3534 184 0.2000 0.2384 REMARK 3 9 2.7961 - 2.6885 1.00 3564 176 0.2066 0.2280 REMARK 3 10 2.6885 - 2.5958 1.00 3523 197 0.1981 0.2153 REMARK 3 11 2.5958 - 2.5146 1.00 3554 178 0.2071 0.2020 REMARK 3 12 2.5146 - 2.4428 1.00 3505 190 0.2004 0.2162 REMARK 3 13 2.4428 - 2.3785 1.00 3512 200 0.1946 0.2073 REMARK 3 14 2.3785 - 2.3205 1.00 3527 201 0.2006 0.2214 REMARK 3 15 2.3205 - 2.2677 1.00 3528 195 0.1984 0.2354 REMARK 3 16 2.2677 - 2.2195 1.00 3478 177 0.1946 0.2215 REMARK 3 17 2.2195 - 2.1751 1.00 3551 189 0.1963 0.2099 REMARK 3 18 2.1751 - 2.1341 1.00 3470 189 0.2052 0.2338 REMARK 3 19 2.1341 - 2.0960 1.00 3546 191 0.2008 0.2199 REMARK 3 20 2.0960 - 2.0604 1.00 3485 163 0.1988 0.2320 REMARK 3 21 2.0604 - 2.0272 1.00 3568 166 0.2089 0.2386 REMARK 3 22 2.0272 - 1.9960 1.00 3473 194 0.2074 0.2310 REMARK 3 23 1.9960 - 1.9667 1.00 3507 166 0.2046 0.2325 REMARK 3 24 1.9667 - 1.9390 1.00 3501 190 0.1953 0.2410 REMARK 3 25 1.9390 - 1.9128 1.00 3511 180 0.2040 0.2316 REMARK 3 26 1.9128 - 1.8879 1.00 3503 177 0.1998 0.2313 REMARK 3 27 1.8879 - 1.8643 1.00 3504 194 0.2062 0.2388 REMARK 3 28 1.8643 - 1.8419 1.00 3438 212 0.2076 0.2220 REMARK 3 29 1.8419 - 1.8205 1.00 3473 228 0.2069 0.2357 REMARK 3 30 1.8205 - 1.8100 1.00 3454 202 0.2155 0.2299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.165 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.974 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 8706 REMARK 3 ANGLE : 1.517 11793 REMARK 3 CHIRALITY : 0.090 1192 REMARK 3 PLANARITY : 0.007 1534 REMARK 3 DIHEDRAL : 12.489 3257 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.2924 79.9616 101.7534 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.1572 REMARK 3 T33: 0.1610 T12: 0.0163 REMARK 3 T13: 0.0142 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.1049 L22: 0.2704 REMARK 3 L33: 0.2232 L12: 0.1573 REMARK 3 L13: 0.1290 L23: 0.1991 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0108 S13: 0.0243 REMARK 3 S21: 0.0235 S22: -0.0208 S23: 0.0347 REMARK 3 S31: 0.0092 S32: -0.0069 S33: 0.0231 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 39.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G2V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.11M SODIUM HEPES, 18% W/V PEG 8000, REMARK 280 PH6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.17100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.50550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.36100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.50550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.17100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.36100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 23 REMARK 465 THR A 24 REMARK 465 LYS A 25 REMARK 465 ALA A 26 REMARK 465 GLN B 23 REMARK 465 THR B 24 REMARK 465 LYS B 25 REMARK 465 ALA B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 ASN B 29 REMARK 465 LYS B 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 55 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 847 O HOH A 946 1.03 REMARK 500 HE22 GLN A 369 CA CA A 601 1.55 REMARK 500 O HOH A 946 O HOH A 978 1.55 REMARK 500 O HOH A 760 O HOH A 978 1.86 REMARK 500 O HOH A 944 O HOH A 1005 2.07 REMARK 500 O HOH B 872 O HOH B 874 2.14 REMARK 500 O HOH B 730 O HOH B 825 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 292 CD GLU A 292 OE1 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 347 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 34.65 73.85 REMARK 500 ASN A 78 108.75 -168.74 REMARK 500 TRP A 131 -70.55 -126.54 REMARK 500 GLU A 134 14.35 58.08 REMARK 500 HIS A 231 39.92 -92.54 REMARK 500 MET A 373 45.51 -98.35 REMARK 500 HIS A 376 16.72 59.41 REMARK 500 ASP A 380 -153.45 71.47 REMARK 500 LYS A 381 -126.30 -145.52 REMARK 500 ARG A 382 -45.27 81.62 REMARK 500 TRP A 397 87.98 -156.28 REMARK 500 HIS A 468 -9.76 73.89 REMARK 500 THR A 478 -169.30 -104.90 REMARK 500 ASP A 500 57.38 -145.86 REMARK 500 ASN A 536 2.64 80.33 REMARK 500 ASP B 53 28.99 -140.63 REMARK 500 ASN B 78 108.82 -167.95 REMARK 500 TRP B 131 -66.45 -128.86 REMARK 500 HIS B 231 37.06 -94.08 REMARK 500 MET B 373 43.85 -104.21 REMARK 500 ASP B 380 -155.41 70.95 REMARK 500 LYS B 381 -127.08 -143.01 REMARK 500 ARG B 382 -47.54 79.89 REMARK 500 TRP B 397 83.04 -154.60 REMARK 500 HIS B 468 -7.16 72.65 REMARK 500 ASP B 500 58.08 -145.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1018 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 931 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 932 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD1 REMARK 620 2 ASP A 41 OD1 81.7 REMARK 620 3 ASP A 368 OD1 88.2 84.1 REMARK 620 4 ASP A 368 OD2 91.0 133.6 49.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 40 OD1 REMARK 620 2 ASP B 41 OD1 86.7 REMARK 620 3 ASP B 368 OD1 89.8 83.1 REMARK 620 4 ASP B 368 OD2 89.0 131.1 48.2 REMARK 620 N 1 2 3 DBREF 7EBP A 23 552 UNP B2UR15 B2UR15_AKKM8 23 552 DBREF 7EBP B 23 552 UNP B2UR15 B2UR15_AKKM8 23 552 SEQRES 1 A 530 GLN THR LYS ALA GLU GLU ASN LYS LYS PRO ASN ILE LEU SEQRES 2 A 530 PHE ILE ILE THR ASP ASP HIS ALA TYR GLN THR LEU GLY SEQRES 3 A 530 THR GLY ASN ASN ASP SER PRO VAL ALA LEU PRO ASN PHE SEQRES 4 A 530 ASN LYS LEU GLY ARG GLN GLY MET VAL PHE ASP ARG SER SEQRES 5 A 530 TYR CYS ALA ASN SER LEU CYS GLY PRO SER ARG ALA CYS SEQRES 6 A 530 ILE LEU THR GLY ARG HIS SER HIS MET ASN GLY PHE VAL SEQRES 7 A 530 PHE ASN GLY GLN ARG PRO LEU ASP GLY SER GLN PRO THR SEQRES 8 A 530 TYR PRO LYS MET LEU GLN LYS ALA GLY TYR GLN THR GLY SEQRES 9 A 530 LEU PHE GLY LYS TRP HIS LEU GLU SER ASP PRO THR GLY SEQRES 10 A 530 PHE ASP THR TRP GLU ILE PHE PRO GLY GLN GLY SER TYR SEQRES 11 A 530 TYR ASN PRO ASP PHE ILE SER LEU LYS PRO ASP GLY LYS SEQRES 12 A 530 ARG GLN THR LYS ARG PHE PRO GLY TYR ALA THR ASP VAL SEQRES 13 A 530 VAL THR ASP LYS SER ILE GLN TRP LEU GLY ASN ARG ASP SEQRES 14 A 530 LYS ASN LYS PRO PHE LEU LEU VAL VAL GLY HIS LYS ALA SEQRES 15 A 530 PRO HIS ARG ALA TRP CYS PRO ALA LEU ARG HIS LEU GLY SEQRES 16 A 530 LYS VAL ASP THR SER SER MET THR PRO PRO ALA ASN PHE SEQRES 17 A 530 HIS ASP ASP TYR ALA ASN ARG PRO GLU PHE LEU LYS LYS SEQRES 18 A 530 ASN GLN GLN THR VAL ALA ASN HIS MET ALA ILE TYR SER SEQRES 19 A 530 ASP LEU LYS VAL LEU LYS ASP GLN VAL PRO GLU GLU MET SEQRES 20 A 530 ARG LYS SER ILE VAL SER PRO GLY TYR GLY TRP ASP LEU SEQRES 21 A 530 GLY GLU LEU ASN ARG MET THR PRO GLU GLU LYS LYS THR SEQRES 22 A 530 TRP THR ASP TYR TYR ALA LYS ARG THR LYS SER LEU VAL SEQRES 23 A 530 ASP GLY MET LYS SER GLY LYS LEU LYS ASP PRO LYS ALA SEQRES 24 A 530 PHE ALA GLU TRP LYS TRP HIS ALA TYR MET GLU ASP TYR SEQRES 25 A 530 LEU GLY CYS LEU LEU SER VAL ASP ASP SER ILE GLY ARG SEQRES 26 A 530 LEU MET GLU TYR LEU ASP LYS GLU GLY ILE ALA LYS ASP SEQRES 27 A 530 THR LEU VAL ILE TYR CYS GLY ASP GLN GLY PHE TYR MET SEQRES 28 A 530 GLY GLU HIS GLY MET TYR ASP LYS ARG TRP ILE PHE GLU SEQRES 29 A 530 GLU SER LEU ARG MET PRO LEU ILE MET ARG TRP PRO GLY SEQRES 30 A 530 LYS ILE PRO ALA GLY ILE ARG ASN ASN THR MET VAL GLN SEQRES 31 A 530 ASN ILE ASP TYR ALA PRO THR ILE VAL SER ALA ALA GLY SEQRES 32 A 530 ALA ASP THR PRO GLU ASN MET ASN THR PHE GLN GLY VAL SEQRES 33 A 530 SER LEU LEU PRO THR ALA PHE THR GLY LYS THR PRO ASP SEQRES 34 A 530 ASN TRP ARG ASP ALA ILE TYR TYR CYS PHE TYR GLU ASN SEQRES 35 A 530 PRO GLY GLU HIS ASN ALA PRO ARG HIS ASP GLY ILE ARG SEQRES 36 A 530 THR ASP ARG TYR THR LEU SER TYR ILE TRP THR SER ASP SEQRES 37 A 530 GLU TRP MET LEU PHE ASP MET LYS LYS ASP PRO MET GLN SEQRES 38 A 530 MET LYS ASN VAL ILE ASP ASP PRO ALA TYR LYS THR THR SEQRES 39 A 530 VAL GLU GLN LEU LYS LYS ARG TYR HIS GLU LEU ARG LYS SEQRES 40 A 530 THR TYR LYS VAL PRO GLU ASN SER PRO GLY GLY LYS GLY SEQRES 41 A 530 THR PRO ILE PRO LYS PHE ASP ALA SER TRP SEQRES 1 B 530 GLN THR LYS ALA GLU GLU ASN LYS LYS PRO ASN ILE LEU SEQRES 2 B 530 PHE ILE ILE THR ASP ASP HIS ALA TYR GLN THR LEU GLY SEQRES 3 B 530 THR GLY ASN ASN ASP SER PRO VAL ALA LEU PRO ASN PHE SEQRES 4 B 530 ASN LYS LEU GLY ARG GLN GLY MET VAL PHE ASP ARG SER SEQRES 5 B 530 TYR CYS ALA ASN SER LEU CYS GLY PRO SER ARG ALA CYS SEQRES 6 B 530 ILE LEU THR GLY ARG HIS SER HIS MET ASN GLY PHE VAL SEQRES 7 B 530 PHE ASN GLY GLN ARG PRO LEU ASP GLY SER GLN PRO THR SEQRES 8 B 530 TYR PRO LYS MET LEU GLN LYS ALA GLY TYR GLN THR GLY SEQRES 9 B 530 LEU PHE GLY LYS TRP HIS LEU GLU SER ASP PRO THR GLY SEQRES 10 B 530 PHE ASP THR TRP GLU ILE PHE PRO GLY GLN GLY SER TYR SEQRES 11 B 530 TYR ASN PRO ASP PHE ILE SER LEU LYS PRO ASP GLY LYS SEQRES 12 B 530 ARG GLN THR LYS ARG PHE PRO GLY TYR ALA THR ASP VAL SEQRES 13 B 530 VAL THR ASP LYS SER ILE GLN TRP LEU GLY ASN ARG ASP SEQRES 14 B 530 LYS ASN LYS PRO PHE LEU LEU VAL VAL GLY HIS LYS ALA SEQRES 15 B 530 PRO HIS ARG ALA TRP CYS PRO ALA LEU ARG HIS LEU GLY SEQRES 16 B 530 LYS VAL ASP THR SER SER MET THR PRO PRO ALA ASN PHE SEQRES 17 B 530 HIS ASP ASP TYR ALA ASN ARG PRO GLU PHE LEU LYS LYS SEQRES 18 B 530 ASN GLN GLN THR VAL ALA ASN HIS MET ALA ILE TYR SER SEQRES 19 B 530 ASP LEU LYS VAL LEU LYS ASP GLN VAL PRO GLU GLU MET SEQRES 20 B 530 ARG LYS SER ILE VAL SER PRO GLY TYR GLY TRP ASP LEU SEQRES 21 B 530 GLY GLU LEU ASN ARG MET THR PRO GLU GLU LYS LYS THR SEQRES 22 B 530 TRP THR ASP TYR TYR ALA LYS ARG THR LYS SER LEU VAL SEQRES 23 B 530 ASP GLY MET LYS SER GLY LYS LEU LYS ASP PRO LYS ALA SEQRES 24 B 530 PHE ALA GLU TRP LYS TRP HIS ALA TYR MET GLU ASP TYR SEQRES 25 B 530 LEU GLY CYS LEU LEU SER VAL ASP ASP SER ILE GLY ARG SEQRES 26 B 530 LEU MET GLU TYR LEU ASP LYS GLU GLY ILE ALA LYS ASP SEQRES 27 B 530 THR LEU VAL ILE TYR CYS GLY ASP GLN GLY PHE TYR MET SEQRES 28 B 530 GLY GLU HIS GLY MET TYR ASP LYS ARG TRP ILE PHE GLU SEQRES 29 B 530 GLU SER LEU ARG MET PRO LEU ILE MET ARG TRP PRO GLY SEQRES 30 B 530 LYS ILE PRO ALA GLY ILE ARG ASN ASN THR MET VAL GLN SEQRES 31 B 530 ASN ILE ASP TYR ALA PRO THR ILE VAL SER ALA ALA GLY SEQRES 32 B 530 ALA ASP THR PRO GLU ASN MET ASN THR PHE GLN GLY VAL SEQRES 33 B 530 SER LEU LEU PRO THR ALA PHE THR GLY LYS THR PRO ASP SEQRES 34 B 530 ASN TRP ARG ASP ALA ILE TYR TYR CYS PHE TYR GLU ASN SEQRES 35 B 530 PRO GLY GLU HIS ASN ALA PRO ARG HIS ASP GLY ILE ARG SEQRES 36 B 530 THR ASP ARG TYR THR LEU SER TYR ILE TRP THR SER ASP SEQRES 37 B 530 GLU TRP MET LEU PHE ASP MET LYS LYS ASP PRO MET GLN SEQRES 38 B 530 MET LYS ASN VAL ILE ASP ASP PRO ALA TYR LYS THR THR SEQRES 39 B 530 VAL GLU GLN LEU LYS LYS ARG TYR HIS GLU LEU ARG LYS SEQRES 40 B 530 THR TYR LYS VAL PRO GLU ASN SER PRO GLY GLY LYS GLY SEQRES 41 B 530 THR PRO ILE PRO LYS PHE ASP ALA SER TRP HET CA A 601 1 HET GOL A 602 14 HET CA B 601 1 HET GOL B 602 14 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *550(H2 O) HELIX 1 AA1 ALA A 43 LEU A 47 5 5 HELIX 2 AA2 LEU A 58 GLY A 68 1 11 HELIX 3 AA3 LEU A 80 GLY A 91 1 12 HELIX 4 AA4 HIS A 93 GLY A 98 1 6 HELIX 5 AA5 THR A 113 ALA A 121 1 9 HELIX 6 AA6 TYR A 174 ASN A 189 1 16 HELIX 7 AA7 ALA A 212 LEU A 216 5 5 HELIX 8 AA8 PRO A 238 ASN A 244 5 7 HELIX 9 AA9 LEU A 261 VAL A 265 5 5 HELIX 10 AB1 PRO A 266 GLU A 268 5 3 HELIX 11 AB2 MET A 269 VAL A 274 1 6 HELIX 12 AB3 GLY A 283 MET A 288 1 6 HELIX 13 AB4 THR A 289 SER A 313 1 25 HELIX 14 AB5 GLY A 314 LYS A 317 5 4 HELIX 15 AB6 ASP A 318 GLU A 355 1 38 HELIX 16 AB7 ILE A 357 LYS A 359 5 3 HELIX 17 AB8 GLY A 374 MET A 378 5 5 HELIX 18 AB9 PHE A 385 ARG A 390 1 6 HELIX 19 AC1 ASP A 415 ALA A 424 1 10 HELIX 20 AC2 THR A 428 ASN A 433 1 6 HELIX 21 AC3 LEU A 440 PHE A 445 1 6 HELIX 22 AC4 GLY A 466 ALA A 470 5 5 HELIX 23 AC5 ASP A 510 ALA A 512 5 3 HELIX 24 AC6 TYR A 513 TYR A 531 1 19 HELIX 25 AC7 ALA B 43 LEU B 47 5 5 HELIX 26 AC8 LEU B 58 GLY B 68 1 11 HELIX 27 AC9 LEU B 80 GLY B 91 1 12 HELIX 28 AD1 HIS B 93 GLY B 98 1 6 HELIX 29 AD2 THR B 113 ALA B 121 1 9 HELIX 30 AD3 TYR B 174 ASN B 189 1 16 HELIX 31 AD4 ALA B 212 LEU B 216 5 5 HELIX 32 AD5 PRO B 238 ASN B 244 5 7 HELIX 33 AD6 LEU B 261 VAL B 265 5 5 HELIX 34 AD7 PRO B 266 GLU B 268 5 3 HELIX 35 AD8 MET B 269 VAL B 274 1 6 HELIX 36 AD9 LEU B 282 MET B 288 5 7 HELIX 37 AE1 THR B 289 GLY B 314 1 26 HELIX 38 AE2 LYS B 315 LYS B 317 5 3 HELIX 39 AE3 ASP B 318 GLU B 355 1 38 HELIX 40 AE4 ILE B 357 LYS B 359 5 3 HELIX 41 AE5 GLY B 374 MET B 378 5 5 HELIX 42 AE6 PHE B 385 ARG B 390 1 6 HELIX 43 AE7 ASP B 415 ALA B 424 1 10 HELIX 44 AE8 THR B 428 THR B 434 1 7 HELIX 45 AE9 LEU B 440 GLY B 447 1 8 HELIX 46 AF1 GLY B 466 ALA B 470 5 5 HELIX 47 AF2 ASP B 510 ALA B 512 5 3 HELIX 48 AF3 TYR B 513 TYR B 531 1 19 SHEET 1 AA1 8 THR A 142 ILE A 145 0 SHEET 2 AA1 8 GLN A 124 GLY A 129 1 N GLY A 129 O GLU A 144 SHEET 3 AA1 8 PHE A 196 GLY A 201 1 O GLY A 201 N PHE A 128 SHEET 4 AA1 8 ASN A 33 THR A 39 1 N PHE A 36 O LEU A 198 SHEET 5 AA1 8 THR A 361 GLY A 367 1 O ILE A 364 N ILE A 37 SHEET 6 AA1 8 LEU A 393 ARG A 396 -1 O ARG A 396 N VAL A 363 SHEET 7 AA1 8 MET A 69 PHE A 71 -1 N MET A 69 O MET A 395 SHEET 8 AA1 8 ILE A 405 ASN A 407 1 O ASN A 407 N VAL A 70 SHEET 1 AA2 2 SER A 74 TYR A 75 0 SHEET 2 AA2 2 VAL A 411 GLN A 412 1 O VAL A 411 N TYR A 75 SHEET 1 AA3 2 ASP A 156 LEU A 160 0 SHEET 2 AA3 2 ARG A 166 ARG A 170 -1 O LYS A 169 N PHE A 157 SHEET 1 AA4 4 ILE A 457 PHE A 461 0 SHEET 2 AA4 4 HIS A 473 ARG A 477 -1 O HIS A 473 N PHE A 461 SHEET 3 AA4 4 TYR A 481 ILE A 486 -1 O LEU A 483 N ILE A 476 SHEET 4 AA4 4 GLU A 491 ASP A 496 -1 O GLU A 491 N ILE A 486 SHEET 1 AA5 8 THR B 142 ILE B 145 0 SHEET 2 AA5 8 GLN B 124 GLY B 129 1 N GLY B 129 O GLU B 144 SHEET 3 AA5 8 PHE B 196 GLY B 201 1 O GLY B 201 N PHE B 128 SHEET 4 AA5 8 ASN B 33 THR B 39 1 N ILE B 34 O PHE B 196 SHEET 5 AA5 8 THR B 361 GLY B 367 1 O LEU B 362 N ASN B 33 SHEET 6 AA5 8 LEU B 393 ARG B 396 -1 O ILE B 394 N TYR B 365 SHEET 7 AA5 8 MET B 69 PHE B 71 -1 N MET B 69 O MET B 395 SHEET 8 AA5 8 ILE B 405 ASN B 407 1 O ASN B 407 N VAL B 70 SHEET 1 AA6 2 SER B 74 TYR B 75 0 SHEET 2 AA6 2 VAL B 411 GLN B 412 1 O VAL B 411 N TYR B 75 SHEET 1 AA7 2 ASP B 156 LEU B 160 0 SHEET 2 AA7 2 ARG B 166 ARG B 170 -1 O LYS B 169 N PHE B 157 SHEET 1 AA8 4 ALA B 456 PHE B 461 0 SHEET 2 AA8 4 HIS B 473 THR B 478 -1 O HIS B 473 N PHE B 461 SHEET 3 AA8 4 TYR B 481 ILE B 486 -1 O TYR B 481 N THR B 478 SHEET 4 AA8 4 GLU B 491 ASP B 496 -1 O GLU B 491 N ILE B 486 LINK OD1 ASP A 40 CA CA A 601 1555 1555 2.27 LINK OD1 ASP A 41 CA CA A 601 1555 1555 2.33 LINK OD1 ASP A 368 CA CA A 601 1555 1555 2.80 LINK OD2 ASP A 368 CA CA A 601 1555 1555 2.15 LINK OD1 ASP B 40 CA CA B 601 1555 1555 2.28 LINK OD1 ASP B 41 CA CA B 601 1555 1555 2.19 LINK OD1 ASP B 368 CA CA B 601 1555 1555 2.82 LINK OD2 ASP B 368 CA CA B 601 1555 1555 2.21 CISPEP 1 ALA A 204 PRO A 205 0 -8.75 CISPEP 2 ARG A 207 ALA A 208 0 9.88 CISPEP 3 ASN A 464 PRO A 465 0 -1.91 CISPEP 4 SER A 537 PRO A 538 0 11.61 CISPEP 5 ALA B 204 PRO B 205 0 -9.52 CISPEP 6 ARG B 207 ALA B 208 0 14.98 CISPEP 7 ASN B 464 PRO B 465 0 -3.05 CISPEP 8 SER B 537 PRO B 538 0 9.43 CRYST1 64.342 112.722 165.011 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015542 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006060 0.00000