HEADER TRANSFERASE 11-MAR-21 7EC4 OBSLTE 24-NOV-21 7EC4 7VFM TITLE CRYSTAL STRUCTURE OF SDGB (COMPLEXED WITH UDP AND PEPTIDES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL TRANSFERASE, GROUP 1 FAMILY PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SER-ASP-SER-ASP; COMPND 7 CHAIN: E, G; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS USA300; SOURCE 3 ORGANISM_TAXID: 367830; SOURCE 4 STRAIN: USA300; SOURCE 5 GENE: SAUSA300_0550; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS GLYCOSYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.-G.KIM,I.BAEK,Y.LEE,H.S.KIM REVDAT 2 24-NOV-21 7EC4 1 OBSLTE REVDAT 1 31-MAR-21 7EC4 0 JRNL AUTH D.-G.KIM,I.BAEK,Y.LEE,H.S.KIM JRNL TITL CRYSTAL STRUCTURE OF SDGB (COMPLEXED WITH UDP AND PEPTIDES) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 47049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3268 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.403 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.125 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8601 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7898 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11645 ; 1.538 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18167 ; 1.213 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 989 ; 7.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 499 ;33.387 ;22.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1481 ;16.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;18.818 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1077 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9691 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2123 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7EC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS-HCL (PH 8.5), REMARK 280 AND 25% (W/V) POLYETHYLENE GLYCOL (PEG) 3,350 QUICK-SOAKED WITH REMARK 280 6.14 MM UDP AND 2.45 MM 5-MER SD-REPEAT PEPTIDE (DSDSD), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 103.33100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 318 REMARK 465 GLN A 319 REMARK 465 ARG A 320 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 VAL C 94 REMARK 465 GLU C 95 REMARK 465 ASN C 96 REMARK 465 LYS C 179 REMARK 465 ASP C 180 REMARK 465 GLY C 181 REMARK 465 LYS C 182 REMARK 465 HIS C 502 REMARK 465 HIS C 503 REMARK 465 HIS C 504 REMARK 465 SER G 5 REMARK 465 ASP G 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -57.77 -124.46 REMARK 500 TYR A 52 -43.05 -139.39 REMARK 500 TYR A 70 -14.90 78.02 REMARK 500 GLU A 72 -164.94 -119.85 REMARK 500 HIS A 98 40.39 -106.31 REMARK 500 GLN A 105 -117.40 53.54 REMARK 500 ASP A 123 -65.88 -100.26 REMARK 500 ASP A 154 -126.59 39.53 REMARK 500 GLN A 156 42.11 38.57 REMARK 500 ARG A 224 66.42 -113.44 REMARK 500 ASN A 271 42.75 -141.63 REMARK 500 HIS A 379 -28.16 -142.61 REMARK 500 ASN C 7 -74.75 -113.08 REMARK 500 TYR C 52 -40.30 -140.57 REMARK 500 ARG C 73 131.56 -38.98 REMARK 500 PRO C 76 160.90 -47.03 REMARK 500 GLN C 105 -120.94 55.63 REMARK 500 LEU C 109 -63.83 -103.21 REMARK 500 GLN C 115 -71.76 -86.31 REMARK 500 ASP C 123 -78.87 -106.25 REMARK 500 ARG C 132 17.62 56.40 REMARK 500 ASP C 154 -128.98 56.56 REMARK 500 SER C 177 142.81 -170.97 REMARK 500 ARG C 224 73.57 -115.93 REMARK 500 ALA C 255 68.30 -108.38 REMARK 500 ALA C 328 133.24 -173.85 REMARK 500 PHE C 439 -70.55 -107.06 REMARK 500 ASN C 447 -4.46 70.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP C 601 DBREF1 7EC4 A 1 496 UNP A0A0H2XGN0_STAA3 DBREF2 7EC4 A A0A0H2XGN0 1 496 DBREF1 7EC4 C 1 496 UNP A0A0H2XGN0_STAA3 DBREF2 7EC4 C A0A0H2XGN0 1 496 DBREF 7EC4 E 1 4 PDB 7EC4 7EC4 1 4 DBREF 7EC4 G 3 6 PDB 7EC4 7EC4 3 6 SEQADV 7EC4 SER A 0 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 LEU A 497 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 GLU A 498 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS A 499 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS A 500 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS A 501 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS A 502 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS A 503 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS A 504 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 SER C 0 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 LEU C 497 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 GLU C 498 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS C 499 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS C 500 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS C 501 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS C 502 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS C 503 UNP A0A0H2XGN EXPRESSION TAG SEQADV 7EC4 HIS C 504 UNP A0A0H2XGN EXPRESSION TAG SEQRES 1 A 505 SER MET ASN TYR PHE VAL GLY ASN SER LEU GLY VAL ASN SEQRES 2 A 505 LEU THR GLY ILE GLU LYS ALA ILE ILE ASN ARG LEU ASN SEQRES 3 A 505 LEU PHE LYS GLU MET GLY ARG PRO ALA GLN CYS VAL PHE SEQRES 4 A 505 LEU SER TRP ASN ARG TYR LEU TYR ARG ASN ALA GLN ASN SEQRES 5 A 505 TYR ILE THR SER SER ASP TYR ILE ASN MET TYR ASP PHE SEQRES 6 A 505 PHE GLN GLU ALA THR TYR LEU GLU ARG ASN GLU PRO PHE SEQRES 7 A 505 ASP TRP LEU SER TYR TRP THR ASP GLU CYS HIS TYR THR SEQRES 8 A 505 LEU LYS HIS VAL GLU ASN SER HIS ASP PHE ARG ILE TYR SEQRES 9 A 505 ASP GLN GLU ARG PHE LEU MET TYR ALA HIS PHE GLN ASP SEQRES 10 A 505 PRO LYS TYR ARG ILE LEU ASP TYR VAL ASN HIS PHE ASP SEQRES 11 A 505 SER GLN ARG ARG LYS VAL LYS ARG ASP PHE TYR ASP VAL SEQRES 12 A 505 ARG GLY PHE LEU SER CYS SER ARG ILE LEU VAL ASP LYS SEQRES 13 A 505 GLN GLN THR LEU CYS GLU PHE PHE TYR ASN PRO GLU GLY SEQRES 14 A 505 ASP THR LYS LEU GLU LYS TYR PHE SER TYR LYS ASP GLY SEQRES 15 A 505 LYS PRO GLU VAL GLN LYS ILE ILE VAL TYR TYR ALA ASN SEQRES 16 A 505 LYS GLN TYR PHE PHE ASN ASN GLU THR GLU LEU GLY ALA SEQRES 17 A 505 PHE PHE ILE LYS GLN LEU TYR GLN HIS GLY ASP LEU PHE SEQRES 18 A 505 PHE SER ASP ARG ASN VAL TYR THR ALA PRO ILE PHE ASN SEQRES 19 A 505 LEU THR PRO GLU SER ILE PRO VAL VAL ALA VAL LEU HIS SEQRES 20 A 505 SER THR HIS ILE LYS ASN ILE ASP ALA LEU ASP SER SER SEQRES 21 A 505 PRO PHE LYS ASN VAL TYR LYS ALA MET PHE GLU ASN LEU SEQRES 22 A 505 SER ARG TYR ARG ALA ILE ILE VAL SER THR GLU GLN GLN SEQRES 23 A 505 LYS LEU ASP VAL GLU LYS ARG ILE ASN HIS THR ILE PRO SEQRES 24 A 505 VAL VAL ASN ILE PRO VAL GLY TYR SER GLU THR ILE ASP SEQRES 25 A 505 THR PRO VAL GLN THR LEU ASP GLN ARG SER VAL LYS LEU SEQRES 26 A 505 ILE SER VAL ALA ARG TYR SER PRO GLU LYS GLN LEU HIS SEQRES 27 A 505 GLN GLN ILE GLU LEU ILE LYS ARG LEU VAL SER TYR VAL SEQRES 28 A 505 PRO LYS ILE GLU LEU HIS MET TYR GLY PHE GLY SER GLU SEQRES 29 A 505 SER LYS LYS LEU ASN GLU LEU ILE GLN LYS TYR GLY LEU SEQRES 30 A 505 GLU ASN HIS VAL TYR LEU ARG GLY PHE LEU SER ASN LEU SEQRES 31 A 505 ASP GLN GLU TYR SER ASP ALA TYR LEU SER LEU ILE THR SEQRES 32 A 505 SER ASN MET GLU GLY PHE SER LEU ALA LEU LEU GLU SER SEQRES 33 A 505 LEU ALA HIS GLY VAL PRO VAL ILE SER TYR ASP ILE LYS SEQRES 34 A 505 TYR GLY PRO ASN GLU LEU ILE THR SER ASP PHE ASN GLY SEQRES 35 A 505 TYR LEU ILE THR LYS ASN ASP GLU ASP ALA LEU PHE ASP SEQRES 36 A 505 LYS VAL LYS TYR VAL ILE ASP HIS PRO GLU VAL GLN GLN SEQRES 37 A 505 ARG LEU SER LYS GLY SER LEU ALA LYS ALA GLN GLN TYR SEQRES 38 A 505 SER LYS ALA SER LEU ILE LYS GLN TRP ASP GLN PHE VAL SEQRES 39 A 505 ARG LEU ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 505 SER MET ASN TYR PHE VAL GLY ASN SER LEU GLY VAL ASN SEQRES 2 C 505 LEU THR GLY ILE GLU LYS ALA ILE ILE ASN ARG LEU ASN SEQRES 3 C 505 LEU PHE LYS GLU MET GLY ARG PRO ALA GLN CYS VAL PHE SEQRES 4 C 505 LEU SER TRP ASN ARG TYR LEU TYR ARG ASN ALA GLN ASN SEQRES 5 C 505 TYR ILE THR SER SER ASP TYR ILE ASN MET TYR ASP PHE SEQRES 6 C 505 PHE GLN GLU ALA THR TYR LEU GLU ARG ASN GLU PRO PHE SEQRES 7 C 505 ASP TRP LEU SER TYR TRP THR ASP GLU CYS HIS TYR THR SEQRES 8 C 505 LEU LYS HIS VAL GLU ASN SER HIS ASP PHE ARG ILE TYR SEQRES 9 C 505 ASP GLN GLU ARG PHE LEU MET TYR ALA HIS PHE GLN ASP SEQRES 10 C 505 PRO LYS TYR ARG ILE LEU ASP TYR VAL ASN HIS PHE ASP SEQRES 11 C 505 SER GLN ARG ARG LYS VAL LYS ARG ASP PHE TYR ASP VAL SEQRES 12 C 505 ARG GLY PHE LEU SER CYS SER ARG ILE LEU VAL ASP LYS SEQRES 13 C 505 GLN GLN THR LEU CYS GLU PHE PHE TYR ASN PRO GLU GLY SEQRES 14 C 505 ASP THR LYS LEU GLU LYS TYR PHE SER TYR LYS ASP GLY SEQRES 15 C 505 LYS PRO GLU VAL GLN LYS ILE ILE VAL TYR TYR ALA ASN SEQRES 16 C 505 LYS GLN TYR PHE PHE ASN ASN GLU THR GLU LEU GLY ALA SEQRES 17 C 505 PHE PHE ILE LYS GLN LEU TYR GLN HIS GLY ASP LEU PHE SEQRES 18 C 505 PHE SER ASP ARG ASN VAL TYR THR ALA PRO ILE PHE ASN SEQRES 19 C 505 LEU THR PRO GLU SER ILE PRO VAL VAL ALA VAL LEU HIS SEQRES 20 C 505 SER THR HIS ILE LYS ASN ILE ASP ALA LEU ASP SER SER SEQRES 21 C 505 PRO PHE LYS ASN VAL TYR LYS ALA MET PHE GLU ASN LEU SEQRES 22 C 505 SER ARG TYR ARG ALA ILE ILE VAL SER THR GLU GLN GLN SEQRES 23 C 505 LYS LEU ASP VAL GLU LYS ARG ILE ASN HIS THR ILE PRO SEQRES 24 C 505 VAL VAL ASN ILE PRO VAL GLY TYR SER GLU THR ILE ASP SEQRES 25 C 505 THR PRO VAL GLN THR LEU ASP GLN ARG SER VAL LYS LEU SEQRES 26 C 505 ILE SER VAL ALA ARG TYR SER PRO GLU LYS GLN LEU HIS SEQRES 27 C 505 GLN GLN ILE GLU LEU ILE LYS ARG LEU VAL SER TYR VAL SEQRES 28 C 505 PRO LYS ILE GLU LEU HIS MET TYR GLY PHE GLY SER GLU SEQRES 29 C 505 SER LYS LYS LEU ASN GLU LEU ILE GLN LYS TYR GLY LEU SEQRES 30 C 505 GLU ASN HIS VAL TYR LEU ARG GLY PHE LEU SER ASN LEU SEQRES 31 C 505 ASP GLN GLU TYR SER ASP ALA TYR LEU SER LEU ILE THR SEQRES 32 C 505 SER ASN MET GLU GLY PHE SER LEU ALA LEU LEU GLU SER SEQRES 33 C 505 LEU ALA HIS GLY VAL PRO VAL ILE SER TYR ASP ILE LYS SEQRES 34 C 505 TYR GLY PRO ASN GLU LEU ILE THR SER ASP PHE ASN GLY SEQRES 35 C 505 TYR LEU ILE THR LYS ASN ASP GLU ASP ALA LEU PHE ASP SEQRES 36 C 505 LYS VAL LYS TYR VAL ILE ASP HIS PRO GLU VAL GLN GLN SEQRES 37 C 505 ARG LEU SER LYS GLY SER LEU ALA LYS ALA GLN GLN TYR SEQRES 38 C 505 SER LYS ALA SER LEU ILE LYS GLN TRP ASP GLN PHE VAL SEQRES 39 C 505 ARG LEU ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 4 SER ASP SER ASP SEQRES 1 G 4 SER ASP SER ASP HET UDP A 601 25 HET UDP C 601 25 HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 5 UDP 2(C9 H14 N2 O12 P2) FORMUL 7 HOH *17(H2 O) HELIX 1 AA1 THR A 14 GLY A 31 1 18 HELIX 2 AA2 TYR A 44 GLN A 50 1 7 HELIX 3 AA3 THR A 54 SER A 56 5 3 HELIX 4 AA4 MET A 61 GLN A 66 1 6 HELIX 5 AA5 ASP A 78 GLU A 86 1 9 HELIX 6 AA6 ASN A 201 TYR A 214 1 14 HELIX 7 AA7 ARG A 224 ASN A 233 1 10 HELIX 8 AA8 LYS A 262 VAL A 264 5 3 HELIX 9 AA9 TYR A 265 GLU A 270 1 6 HELIX 10 AB1 ASN A 271 TYR A 275 5 5 HELIX 11 AB2 THR A 282 ASN A 294 1 13 HELIX 12 AB3 SER A 331 GLN A 335 5 5 HELIX 13 AB4 LEU A 336 SER A 348 1 13 HELIX 14 AB5 GLU A 363 TYR A 374 1 12 HELIX 15 AB6 SER A 409 HIS A 418 1 10 HELIX 16 AB7 GLY A 430 ILE A 435 1 6 HELIX 17 AB8 ASP A 448 ASP A 461 1 14 HELIX 18 AB9 HIS A 462 GLN A 479 1 18 HELIX 19 AC1 SER A 481 HIS A 500 1 20 HELIX 20 AC2 THR C 14 MET C 30 1 17 HELIX 21 AC3 TYR C 44 ASN C 51 1 8 HELIX 22 AC4 THR C 54 SER C 56 5 3 HELIX 23 AC5 MET C 61 GLN C 66 1 6 HELIX 24 AC6 TRP C 79 GLU C 86 1 8 HELIX 25 AC7 ASN C 201 TYR C 214 1 14 HELIX 26 AC8 ARG C 224 LEU C 234 1 11 HELIX 27 AC9 LYS C 262 VAL C 264 5 3 HELIX 28 AD1 TYR C 265 GLU C 270 1 6 HELIX 29 AD2 ASN C 271 TYR C 275 5 5 HELIX 30 AD3 THR C 282 ILE C 293 1 12 HELIX 31 AD4 SER C 331 GLN C 335 5 5 HELIX 32 AD5 LEU C 336 VAL C 347 1 12 HELIX 33 AD6 GLU C 363 TYR C 374 1 12 HELIX 34 AD7 LEU C 389 SER C 394 1 6 HELIX 35 AD8 SER C 409 HIS C 418 1 10 HELIX 36 AD9 GLY C 430 ILE C 435 1 6 HELIX 37 AE1 ASP C 448 HIS C 462 1 15 HELIX 38 AE2 HIS C 462 GLN C 479 1 18 HELIX 39 AE3 SER C 481 HIS C 501 1 21 SHEET 1 AA1 7 TYR A 58 ASN A 60 0 SHEET 2 AA1 7 ALA A 34 PHE A 38 1 N CYS A 36 O ILE A 59 SHEET 3 AA1 7 ASN A 2 VAL A 5 1 N PHE A 4 O VAL A 37 SHEET 4 AA1 7 LEU A 219 SER A 222 1 O PHE A 221 N TYR A 3 SHEET 5 AA1 7 VAL A 241 VAL A 244 1 O VAL A 242 N SER A 222 SHEET 6 AA1 7 ILE A 278 VAL A 280 1 O ILE A 279 N ALA A 243 SHEET 7 AA1 7 VAL A 299 ASN A 301 1 O VAL A 300 N ILE A 278 SHEET 1 AA210 THR A 90 VAL A 94 0 SHEET 2 AA210 ASP A 99 ASP A 104 -1 O TYR A 103 N THR A 90 SHEET 3 AA210 ARG A 107 PHE A 114 -1 O MET A 110 N ILE A 102 SHEET 4 AA210 LEU A 122 PHE A 128 -1 O ASP A 123 N HIS A 113 SHEET 5 AA210 LYS A 134 TYR A 140 -1 O ASP A 138 N VAL A 125 SHEET 6 AA210 LEU A 146 VAL A 153 -1 O CYS A 148 N PHE A 139 SHEET 7 AA210 GLN A 157 TYR A 164 -1 O PHE A 162 N SER A 149 SHEET 8 AA210 THR A 170 LYS A 179 -1 O LYS A 171 N PHE A 163 SHEET 9 AA210 LYS A 182 TYR A 192 -1 O TYR A 191 N LYS A 171 SHEET 10 AA210 LYS A 195 PHE A 199 -1 O LYS A 195 N TYR A 192 SHEET 1 AA3 6 VAL A 380 GLY A 384 0 SHEET 2 AA3 6 ILE A 353 TYR A 358 1 N MET A 357 O TYR A 381 SHEET 3 AA3 6 VAL A 322 VAL A 327 1 N LEU A 324 O GLU A 354 SHEET 4 AA3 6 ALA A 396 ILE A 401 1 O TYR A 397 N LYS A 323 SHEET 5 AA3 6 VAL A 422 TYR A 425 1 O ILE A 423 N SER A 399 SHEET 6 AA3 6 GLY A 441 ILE A 444 1 O ILE A 444 N SER A 424 SHEET 1 AA4 7 TYR C 58 ASN C 60 0 SHEET 2 AA4 7 ALA C 34 PHE C 38 1 N PHE C 38 O ILE C 59 SHEET 3 AA4 7 ASN C 2 VAL C 5 1 N PHE C 4 O VAL C 37 SHEET 4 AA4 7 LEU C 219 SER C 222 1 O LEU C 219 N TYR C 3 SHEET 5 AA4 7 VAL C 241 VAL C 244 1 O VAL C 244 N SER C 222 SHEET 6 AA4 7 ILE C 278 VAL C 280 1 O ILE C 279 N ALA C 243 SHEET 7 AA4 7 VAL C 299 ASN C 301 1 O VAL C 300 N VAL C 280 SHEET 1 AA510 THR C 90 LEU C 91 0 SHEET 2 AA510 ILE C 102 ASP C 104 -1 O TYR C 103 N THR C 90 SHEET 3 AA510 ARG C 107 PHE C 114 -1 O MET C 110 N ILE C 102 SHEET 4 AA510 LEU C 122 PHE C 128 -1 O ASN C 126 N TYR C 111 SHEET 5 AA510 LYS C 134 TYR C 140 -1 O TYR C 140 N ASP C 123 SHEET 6 AA510 LEU C 146 VAL C 153 -1 O LEU C 152 N VAL C 135 SHEET 7 AA510 GLN C 157 TYR C 164 -1 O CYS C 160 N ILE C 151 SHEET 8 AA510 THR C 170 SER C 177 -1 O LYS C 171 N PHE C 163 SHEET 9 AA510 GLU C 184 TYR C 192 -1 O GLN C 186 N TYR C 175 SHEET 10 AA510 LYS C 195 PHE C 199 -1 O TYR C 197 N VAL C 190 SHEET 1 AA6 6 VAL C 380 LEU C 382 0 SHEET 2 AA6 6 ILE C 353 TYR C 358 1 N LEU C 355 O TYR C 381 SHEET 3 AA6 6 VAL C 322 VAL C 327 1 N SER C 326 O TYR C 358 SHEET 4 AA6 6 ALA C 396 ILE C 401 1 O TYR C 397 N LYS C 323 SHEET 5 AA6 6 VAL C 422 TYR C 425 1 O ILE C 423 N ILE C 401 SHEET 6 AA6 6 GLY C 441 ILE C 444 1 O ILE C 444 N SER C 424 CISPEP 1 LYS A 428 TYR A 429 0 -3.45 CISPEP 2 LYS C 428 TYR C 429 0 -18.72 SITE 1 AC1 13 LYS A 18 VAL A 327 ARG A 329 TYR A 358 SITE 2 AC1 13 GLY A 359 GLY A 384 PHE A 385 LEU A 386 SITE 3 AC1 13 LEU A 389 SER A 409 LEU A 410 ALA A 411 SITE 4 AC1 13 HOH A 707 SITE 1 AC2 11 VAL C 327 LYS C 334 TYR C 358 GLY C 384 SITE 2 AC2 11 PHE C 385 LEU C 386 LEU C 389 SER C 409 SITE 3 AC2 11 LEU C 410 ALA C 411 GLU C 414 CRYST1 42.660 206.662 65.935 90.00 104.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023441 0.000000 0.006205 0.00000 SCALE2 0.000000 0.004839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015689 0.00000