data_7ECD # _entry.id 7ECD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ECD pdb_00007ecd 10.2210/pdb7ecd/pdb WWPDB D_1300021033 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7ECD _pdbx_database_status.recvd_initial_deposition_date 2021-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kimura, K.' 1 ? 'Kawai, F.' 2 ? 'Kubota-Kawai, H.' 3 ? 'Watanabe, Y.' 4 ? 'Tamura, Y.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country JP _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biochem. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0021-924X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 171 _citation.language ? _citation.page_first 429 _citation.page_last 441 _citation.title 'Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/jb/mvab154 _citation.pdbx_database_id_PubMed 34964897 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kimura, K.' 1 ? primary 'Kawai, F.' 2 ? primary 'Kubota-Kawai, H.' 3 ? primary 'Watanabe, Y.' 4 ? primary 'Tomii, K.' 5 ? primary 'Kojima, R.' 6 ? primary 'Hirata, K.' 7 ? primary 'Yamamori, Y.' 8 ? primary 'Endo, T.' 9 ? primary 'Tamura, Y.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7ECD _cell.details ? _cell.formula_units_Z ? _cell.length_a 104.159 _cell.length_a_esd ? _cell.length_b 104.159 _cell.length_b_esd ? _cell.length_c 113.959 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ECD _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphatidate cytidylyltransferase' 32047.600 1 2.7.7.41 ? ? ? 2 non-polymer syn "CYTIDINE-5'-TRIPHOSPHATE" 483.156 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHMKDFIKEFLNERPEVVAAFGYGSGVFKQLGYDSKEKPQIDLILIVNDMKLWHKENIKKNPKDYSFIGRNFFLN SSIDEIKGITGITYQSNIEYKGHLFKYGIIEYGDFVRHMQTWDSFYVPGRFQKPILTIKSNNFIDELILQNRRNACKVGL LCLNNKDLKDLYLTICNLSYSGDTRMKVAENPKKVENIVGASYDKFNEMYNFNDLYQKNGERIEYEIDIDELPSSLEKYI KDDKTKEKVMEYLSDLNRKESSLQTMKGIKTN ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHMKDFIKEFLNERPEVVAAFGYGSGVFKQLGYDSKEKPQIDLILIVNDMKLWHKENIKKNPKDYSFIGRNFFLN SSIDEIKGITGITYQSNIEYKGHLFKYGIIEYGDFVRHMQTWDSFYVPGRFQKPILTIKSNNFIDELILQNRRNACKVGL LCLNNKDLKDLYLTICNLSYSGDTRMKVAENPKKVENIVGASYDKFNEMYNFNDLYQKNGERIEYEIDIDELPSSLEKYI KDDKTKEKVMEYLSDLNRKESSLQTMKGIKTN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 LYS n 1 10 ASP n 1 11 PHE n 1 12 ILE n 1 13 LYS n 1 14 GLU n 1 15 PHE n 1 16 LEU n 1 17 ASN n 1 18 GLU n 1 19 ARG n 1 20 PRO n 1 21 GLU n 1 22 VAL n 1 23 VAL n 1 24 ALA n 1 25 ALA n 1 26 PHE n 1 27 GLY n 1 28 TYR n 1 29 GLY n 1 30 SER n 1 31 GLY n 1 32 VAL n 1 33 PHE n 1 34 LYS n 1 35 GLN n 1 36 LEU n 1 37 GLY n 1 38 TYR n 1 39 ASP n 1 40 SER n 1 41 LYS n 1 42 GLU n 1 43 LYS n 1 44 PRO n 1 45 GLN n 1 46 ILE n 1 47 ASP n 1 48 LEU n 1 49 ILE n 1 50 LEU n 1 51 ILE n 1 52 VAL n 1 53 ASN n 1 54 ASP n 1 55 MET n 1 56 LYS n 1 57 LEU n 1 58 TRP n 1 59 HIS n 1 60 LYS n 1 61 GLU n 1 62 ASN n 1 63 ILE n 1 64 LYS n 1 65 LYS n 1 66 ASN n 1 67 PRO n 1 68 LYS n 1 69 ASP n 1 70 TYR n 1 71 SER n 1 72 PHE n 1 73 ILE n 1 74 GLY n 1 75 ARG n 1 76 ASN n 1 77 PHE n 1 78 PHE n 1 79 LEU n 1 80 ASN n 1 81 SER n 1 82 SER n 1 83 ILE n 1 84 ASP n 1 85 GLU n 1 86 ILE n 1 87 LYS n 1 88 GLY n 1 89 ILE n 1 90 THR n 1 91 GLY n 1 92 ILE n 1 93 THR n 1 94 TYR n 1 95 GLN n 1 96 SER n 1 97 ASN n 1 98 ILE n 1 99 GLU n 1 100 TYR n 1 101 LYS n 1 102 GLY n 1 103 HIS n 1 104 LEU n 1 105 PHE n 1 106 LYS n 1 107 TYR n 1 108 GLY n 1 109 ILE n 1 110 ILE n 1 111 GLU n 1 112 TYR n 1 113 GLY n 1 114 ASP n 1 115 PHE n 1 116 VAL n 1 117 ARG n 1 118 HIS n 1 119 MET n 1 120 GLN n 1 121 THR n 1 122 TRP n 1 123 ASP n 1 124 SER n 1 125 PHE n 1 126 TYR n 1 127 VAL n 1 128 PRO n 1 129 GLY n 1 130 ARG n 1 131 PHE n 1 132 GLN n 1 133 LYS n 1 134 PRO n 1 135 ILE n 1 136 LEU n 1 137 THR n 1 138 ILE n 1 139 LYS n 1 140 SER n 1 141 ASN n 1 142 ASN n 1 143 PHE n 1 144 ILE n 1 145 ASP n 1 146 GLU n 1 147 LEU n 1 148 ILE n 1 149 LEU n 1 150 GLN n 1 151 ASN n 1 152 ARG n 1 153 ARG n 1 154 ASN n 1 155 ALA n 1 156 CYS n 1 157 LYS n 1 158 VAL n 1 159 GLY n 1 160 LEU n 1 161 LEU n 1 162 CYS n 1 163 LEU n 1 164 ASN n 1 165 ASN n 1 166 LYS n 1 167 ASP n 1 168 LEU n 1 169 LYS n 1 170 ASP n 1 171 LEU n 1 172 TYR n 1 173 LEU n 1 174 THR n 1 175 ILE n 1 176 CYS n 1 177 ASN n 1 178 LEU n 1 179 SER n 1 180 TYR n 1 181 SER n 1 182 GLY n 1 183 ASP n 1 184 THR n 1 185 ARG n 1 186 MET n 1 187 LYS n 1 188 VAL n 1 189 ALA n 1 190 GLU n 1 191 ASN n 1 192 PRO n 1 193 LYS n 1 194 LYS n 1 195 VAL n 1 196 GLU n 1 197 ASN n 1 198 ILE n 1 199 VAL n 1 200 GLY n 1 201 ALA n 1 202 SER n 1 203 TYR n 1 204 ASP n 1 205 LYS n 1 206 PHE n 1 207 ASN n 1 208 GLU n 1 209 MET n 1 210 TYR n 1 211 ASN n 1 212 PHE n 1 213 ASN n 1 214 ASP n 1 215 LEU n 1 216 TYR n 1 217 GLN n 1 218 LYS n 1 219 ASN n 1 220 GLY n 1 221 GLU n 1 222 ARG n 1 223 ILE n 1 224 GLU n 1 225 TYR n 1 226 GLU n 1 227 ILE n 1 228 ASP n 1 229 ILE n 1 230 ASP n 1 231 GLU n 1 232 LEU n 1 233 PRO n 1 234 SER n 1 235 SER n 1 236 LEU n 1 237 GLU n 1 238 LYS n 1 239 TYR n 1 240 ILE n 1 241 LYS n 1 242 ASP n 1 243 ASP n 1 244 LYS n 1 245 THR n 1 246 LYS n 1 247 GLU n 1 248 LYS n 1 249 VAL n 1 250 MET n 1 251 GLU n 1 252 TYR n 1 253 LEU n 1 254 SER n 1 255 ASP n 1 256 LEU n 1 257 ASN n 1 258 ARG n 1 259 LYS n 1 260 GLU n 1 261 SER n 1 262 SER n 1 263 LEU n 1 264 GLN n 1 265 THR n 1 266 MET n 1 267 LYS n 1 268 GLY n 1 269 ILE n 1 270 LYS n 1 271 THR n 1 272 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 272 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BN804_00706 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Firmicutes bacterium CAG:884' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1262990 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R5MX27_9FIRM _struct_ref.pdbx_db_accession R5MX27 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKDFIKEFLNERPEVVAAFGYGSGVFKQLGYDSKEKPQIDLILIVNDMKLWHKENIKKNPKDYSFIGRNFFLNSSIDEIK GITGITYQSNIEYKGHLFKYGIIEYGDFVRHMQTWDSFYVPGRFQKPILTIKSNNFIDELILQNRRNACKVGLLCLNNKD LKDLYLTICNLSYSGDTRMKVAENPKKVENIVGASYDKFNEMYNFNDLYQKNGERIEYEIDIDELPSSLEKYIKDDKTKE KVMEYLSDLNRKESSLQTMKGIKTN ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7ECD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 272 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession R5MX27 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 265 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7ECD MET A 1 ? UNP R5MX27 ? ? 'initiating methionine' -6 1 1 7ECD HIS A 2 ? UNP R5MX27 ? ? 'expression tag' -5 2 1 7ECD HIS A 3 ? UNP R5MX27 ? ? 'expression tag' -4 3 1 7ECD HIS A 4 ? UNP R5MX27 ? ? 'expression tag' -3 4 1 7ECD HIS A 5 ? UNP R5MX27 ? ? 'expression tag' -2 5 1 7ECD HIS A 6 ? UNP R5MX27 ? ? 'expression tag' -1 6 1 7ECD HIS A 7 ? UNP R5MX27 ? ? 'expression tag' 0 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 CTP non-polymer . "CYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O14 P3' 483.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ECD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.82 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M HEPES ph 7.0, 13-15% (w/v) PEG 6000, 10% (v/v) Glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-11-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL32XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL32XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7ECD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.60 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 36822 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.76 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 5901 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.722 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7ECD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.60 _refine.ls_d_res_low 43.12 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18728 _refine.ls_number_reflns_R_free 904 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.74 _refine.ls_percent_reflns_R_free 4.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2026 _refine.ls_R_factor_R_free 0.2379 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2008 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.25 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.45 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 43.12 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2289 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2255 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 2334 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.065 ? 3141 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 22.469 ? 311 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.055 ? 327 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 400 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.60 2.76 . . 144 2962 99.00 . . . 0.4184 . 0.3516 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.76 2.97 . . 157 2924 100.00 . . . 0.2775 . 0.2785 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.97 3.27 . . 133 2987 100.00 . . . 0.3115 . 0.2525 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.27 3.75 . . 176 2948 100.00 . . . 0.2681 . 0.2169 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.75 4.72 . . 143 2983 100.00 . . . 0.2264 . 0.1758 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.72 43.12 . . 151 3020 100.00 . . . 0.1888 . 0.1744 . . . . . . . . . . . # _struct.entry_id 7ECD _struct.title 'Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ECD _struct_keywords.text 'CDP-DAG synthase, phosphatidic acid, cytidine-diphosphate diacylglycerol, Mitochondrial matrix, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 3 ? GLU A 18 ? HIS A -4 GLU A 11 1 ? 16 HELX_P HELX_P2 AA2 ASP A 54 ? ASN A 66 ? ASP A 47 ASN A 59 1 ? 13 HELX_P HELX_P3 AA3 PRO A 67 ? TYR A 70 ? PRO A 60 TYR A 63 5 ? 4 HELX_P HELX_P4 AA4 SER A 71 ? SER A 81 ? SER A 64 SER A 74 1 ? 11 HELX_P HELX_P5 AA5 SER A 82 ? GLY A 88 ? SER A 75 GLY A 81 1 ? 7 HELX_P HELX_P6 AA6 TYR A 112 ? TRP A 122 ? TYR A 105 TRP A 115 1 ? 11 HELX_P HELX_P7 AA7 PHE A 125 ? PHE A 131 ? PHE A 118 PHE A 124 1 ? 7 HELX_P HELX_P8 AA8 ASN A 141 ? LEU A 163 ? ASN A 134 LEU A 156 1 ? 23 HELX_P HELX_P9 AA9 ASP A 167 ? LEU A 178 ? ASP A 160 LEU A 171 1 ? 12 HELX_P HELX_P10 AB1 ALA A 189 ? SER A 202 ? ALA A 182 SER A 195 1 ? 14 HELX_P HELX_P11 AB2 SER A 202 ? TYR A 210 ? SER A 195 TYR A 203 1 ? 9 HELX_P HELX_P12 AB3 PRO A 233 ? ILE A 240 ? PRO A 226 ILE A 233 1 ? 8 HELX_P HELX_P13 AB4 THR A 245 ? LYS A 270 ? THR A 238 LYS A 263 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 47 OD1 ? ? ? 1_555 C MG . MG ? ? A ASP 40 A MG 302 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc2 metalc ? ? A ASP 47 OD2 ? ? ? 1_555 C MG . MG ? ? A ASP 40 A MG 302 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc3 metalc ? ? B CTP . O1A ? ? ? 1_555 C MG . MG ? ? A CTP 301 A MG 302 1_555 ? ? ? ? ? ? ? 1.927 ? ? metalc4 metalc ? ? B CTP . O1B ? ? ? 1_555 C MG . MG ? ? A CTP 301 A MG 302 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc5 metalc ? ? B CTP . O1G ? ? ? 1_555 C MG . MG ? ? A CTP 301 A MG 302 1_555 ? ? ? ? ? ? ? 2.236 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 92 ? TYR A 100 ? ILE A 85 TYR A 93 AA1 2 HIS A 103 ? GLU A 111 ? HIS A 96 GLU A 104 AA1 3 ILE A 46 ? VAL A 52 ? ILE A 39 VAL A 45 AA1 4 ALA A 24 ? TYR A 28 ? ALA A 17 TYR A 21 AA1 5 LEU A 136 ? LYS A 139 ? LEU A 129 LYS A 132 AA2 1 TYR A 216 ? ASN A 219 ? TYR A 209 ASN A 212 AA2 2 ARG A 222 ? TYR A 225 ? ARG A 215 TYR A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 98 ? N ILE A 91 O PHE A 105 ? O PHE A 98 AA1 2 3 O GLY A 108 ? O GLY A 101 N LEU A 50 ? N LEU A 43 AA1 3 4 O ASP A 47 ? O ASP A 40 N TYR A 28 ? N TYR A 21 AA1 4 5 N GLY A 27 ? N GLY A 20 O LEU A 136 ? O LEU A 129 AA2 1 2 N GLN A 217 ? N GLN A 210 O GLU A 224 ? O GLU A 217 # _atom_sites.entry_id 7ECD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009601 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009601 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008775 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BR C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -6 -6 MET MET A . n A 1 2 HIS 2 -5 -5 HIS HIS A . n A 1 3 HIS 3 -4 -4 HIS HIS A . n A 1 4 HIS 4 -3 -3 HIS HIS A . n A 1 5 HIS 5 -2 -2 HIS HIS A . n A 1 6 HIS 6 -1 -1 HIS HIS A . n A 1 7 HIS 7 0 0 HIS HIS A . n A 1 8 MET 8 1 1 MET MET A . n A 1 9 LYS 9 2 2 LYS LYS A . n A 1 10 ASP 10 3 3 ASP ASP A . n A 1 11 PHE 11 4 4 PHE PHE A . n A 1 12 ILE 12 5 5 ILE ILE A . n A 1 13 LYS 13 6 6 LYS LYS A . n A 1 14 GLU 14 7 7 GLU GLU A . n A 1 15 PHE 15 8 8 PHE PHE A . n A 1 16 LEU 16 9 9 LEU LEU A . n A 1 17 ASN 17 10 10 ASN ASN A . n A 1 18 GLU 18 11 11 GLU GLU A . n A 1 19 ARG 19 12 12 ARG ARG A . n A 1 20 PRO 20 13 13 PRO PRO A . n A 1 21 GLU 21 14 14 GLU GLU A . n A 1 22 VAL 22 15 15 VAL VAL A . n A 1 23 VAL 23 16 16 VAL VAL A . n A 1 24 ALA 24 17 17 ALA ALA A . n A 1 25 ALA 25 18 18 ALA ALA A . n A 1 26 PHE 26 19 19 PHE PHE A . n A 1 27 GLY 27 20 20 GLY GLY A . n A 1 28 TYR 28 21 21 TYR TYR A . n A 1 29 GLY 29 22 22 GLY GLY A . n A 1 30 SER 30 23 23 SER SER A . n A 1 31 GLY 31 24 24 GLY GLY A . n A 1 32 VAL 32 25 25 VAL VAL A . n A 1 33 PHE 33 26 26 PHE PHE A . n A 1 34 LYS 34 27 27 LYS LYS A . n A 1 35 GLN 35 28 28 GLN GLN A . n A 1 36 LEU 36 29 29 LEU LEU A . n A 1 37 GLY 37 30 30 GLY GLY A . n A 1 38 TYR 38 31 31 TYR TYR A . n A 1 39 ASP 39 32 32 ASP ASP A . n A 1 40 SER 40 33 33 SER SER A . n A 1 41 LYS 41 34 34 LYS LYS A . n A 1 42 GLU 42 35 35 GLU GLU A . n A 1 43 LYS 43 36 36 LYS LYS A . n A 1 44 PRO 44 37 37 PRO PRO A . n A 1 45 GLN 45 38 38 GLN GLN A . n A 1 46 ILE 46 39 39 ILE ILE A . n A 1 47 ASP 47 40 40 ASP ASP A . n A 1 48 LEU 48 41 41 LEU LEU A . n A 1 49 ILE 49 42 42 ILE ILE A . n A 1 50 LEU 50 43 43 LEU LEU A . n A 1 51 ILE 51 44 44 ILE ILE A . n A 1 52 VAL 52 45 45 VAL VAL A . n A 1 53 ASN 53 46 46 ASN ASN A . n A 1 54 ASP 54 47 47 ASP ASP A . n A 1 55 MET 55 48 48 MET MET A . n A 1 56 LYS 56 49 49 LYS LYS A . n A 1 57 LEU 57 50 50 LEU LEU A . n A 1 58 TRP 58 51 51 TRP TRP A . n A 1 59 HIS 59 52 52 HIS HIS A . n A 1 60 LYS 60 53 53 LYS LYS A . n A 1 61 GLU 61 54 54 GLU GLU A . n A 1 62 ASN 62 55 55 ASN ASN A . n A 1 63 ILE 63 56 56 ILE ILE A . n A 1 64 LYS 64 57 57 LYS LYS A . n A 1 65 LYS 65 58 58 LYS LYS A . n A 1 66 ASN 66 59 59 ASN ASN A . n A 1 67 PRO 67 60 60 PRO PRO A . n A 1 68 LYS 68 61 61 LYS LYS A . n A 1 69 ASP 69 62 62 ASP ASP A . n A 1 70 TYR 70 63 63 TYR TYR A . n A 1 71 SER 71 64 64 SER SER A . n A 1 72 PHE 72 65 65 PHE PHE A . n A 1 73 ILE 73 66 66 ILE ILE A . n A 1 74 GLY 74 67 67 GLY GLY A . n A 1 75 ARG 75 68 68 ARG ARG A . n A 1 76 ASN 76 69 69 ASN ASN A . n A 1 77 PHE 77 70 70 PHE PHE A . n A 1 78 PHE 78 71 71 PHE PHE A . n A 1 79 LEU 79 72 72 LEU LEU A . n A 1 80 ASN 80 73 73 ASN ASN A . n A 1 81 SER 81 74 74 SER SER A . n A 1 82 SER 82 75 75 SER SER A . n A 1 83 ILE 83 76 76 ILE ILE A . n A 1 84 ASP 84 77 77 ASP ASP A . n A 1 85 GLU 85 78 78 GLU GLU A . n A 1 86 ILE 86 79 79 ILE ILE A . n A 1 87 LYS 87 80 80 LYS LYS A . n A 1 88 GLY 88 81 81 GLY GLY A . n A 1 89 ILE 89 82 82 ILE ILE A . n A 1 90 THR 90 83 83 THR THR A . n A 1 91 GLY 91 84 84 GLY GLY A . n A 1 92 ILE 92 85 85 ILE ILE A . n A 1 93 THR 93 86 86 THR THR A . n A 1 94 TYR 94 87 87 TYR TYR A . n A 1 95 GLN 95 88 88 GLN GLN A . n A 1 96 SER 96 89 89 SER SER A . n A 1 97 ASN 97 90 90 ASN ASN A . n A 1 98 ILE 98 91 91 ILE ILE A . n A 1 99 GLU 99 92 92 GLU GLU A . n A 1 100 TYR 100 93 93 TYR TYR A . n A 1 101 LYS 101 94 94 LYS LYS A . n A 1 102 GLY 102 95 95 GLY GLY A . n A 1 103 HIS 103 96 96 HIS HIS A . n A 1 104 LEU 104 97 97 LEU LEU A . n A 1 105 PHE 105 98 98 PHE PHE A . n A 1 106 LYS 106 99 99 LYS LYS A . n A 1 107 TYR 107 100 100 TYR TYR A . n A 1 108 GLY 108 101 101 GLY GLY A . n A 1 109 ILE 109 102 102 ILE ILE A . n A 1 110 ILE 110 103 103 ILE ILE A . n A 1 111 GLU 111 104 104 GLU GLU A . n A 1 112 TYR 112 105 105 TYR TYR A . n A 1 113 GLY 113 106 106 GLY GLY A . n A 1 114 ASP 114 107 107 ASP ASP A . n A 1 115 PHE 115 108 108 PHE PHE A . n A 1 116 VAL 116 109 109 VAL VAL A . n A 1 117 ARG 117 110 110 ARG ARG A . n A 1 118 HIS 118 111 111 HIS HIS A . n A 1 119 MET 119 112 112 MET MET A . n A 1 120 GLN 120 113 113 GLN GLN A . n A 1 121 THR 121 114 114 THR THR A . n A 1 122 TRP 122 115 115 TRP TRP A . n A 1 123 ASP 123 116 116 ASP ASP A . n A 1 124 SER 124 117 117 SER SER A . n A 1 125 PHE 125 118 118 PHE PHE A . n A 1 126 TYR 126 119 119 TYR TYR A . n A 1 127 VAL 127 120 120 VAL VAL A . n A 1 128 PRO 128 121 121 PRO PRO A . n A 1 129 GLY 129 122 122 GLY GLY A . n A 1 130 ARG 130 123 123 ARG ARG A . n A 1 131 PHE 131 124 124 PHE PHE A . n A 1 132 GLN 132 125 125 GLN GLN A . n A 1 133 LYS 133 126 126 LYS LYS A . n A 1 134 PRO 134 127 127 PRO PRO A . n A 1 135 ILE 135 128 128 ILE ILE A . n A 1 136 LEU 136 129 129 LEU LEU A . n A 1 137 THR 137 130 130 THR THR A . n A 1 138 ILE 138 131 131 ILE ILE A . n A 1 139 LYS 139 132 132 LYS LYS A . n A 1 140 SER 140 133 133 SER SER A . n A 1 141 ASN 141 134 134 ASN ASN A . n A 1 142 ASN 142 135 135 ASN ASN A . n A 1 143 PHE 143 136 136 PHE PHE A . n A 1 144 ILE 144 137 137 ILE ILE A . n A 1 145 ASP 145 138 138 ASP ASP A . n A 1 146 GLU 146 139 139 GLU GLU A . n A 1 147 LEU 147 140 140 LEU LEU A . n A 1 148 ILE 148 141 141 ILE ILE A . n A 1 149 LEU 149 142 142 LEU LEU A . n A 1 150 GLN 150 143 143 GLN GLN A . n A 1 151 ASN 151 144 144 ASN ASN A . n A 1 152 ARG 152 145 145 ARG ARG A . n A 1 153 ARG 153 146 146 ARG ARG A . n A 1 154 ASN 154 147 147 ASN ASN A . n A 1 155 ALA 155 148 148 ALA ALA A . n A 1 156 CYS 156 149 149 CYS CYS A . n A 1 157 LYS 157 150 150 LYS LYS A . n A 1 158 VAL 158 151 151 VAL VAL A . n A 1 159 GLY 159 152 152 GLY GLY A . n A 1 160 LEU 160 153 153 LEU LEU A . n A 1 161 LEU 161 154 154 LEU LEU A . n A 1 162 CYS 162 155 155 CYS CYS A . n A 1 163 LEU 163 156 156 LEU LEU A . n A 1 164 ASN 164 157 157 ASN ASN A . n A 1 165 ASN 165 158 158 ASN ASN A . n A 1 166 LYS 166 159 159 LYS LYS A . n A 1 167 ASP 167 160 160 ASP ASP A . n A 1 168 LEU 168 161 161 LEU LEU A . n A 1 169 LYS 169 162 162 LYS LYS A . n A 1 170 ASP 170 163 163 ASP ASP A . n A 1 171 LEU 171 164 164 LEU LEU A . n A 1 172 TYR 172 165 165 TYR TYR A . n A 1 173 LEU 173 166 166 LEU LEU A . n A 1 174 THR 174 167 167 THR THR A . n A 1 175 ILE 175 168 168 ILE ILE A . n A 1 176 CYS 176 169 169 CYS CYS A . n A 1 177 ASN 177 170 170 ASN ASN A . n A 1 178 LEU 178 171 171 LEU LEU A . n A 1 179 SER 179 172 172 SER SER A . n A 1 180 TYR 180 173 173 TYR TYR A . n A 1 181 SER 181 174 174 SER SER A . n A 1 182 GLY 182 175 175 GLY GLY A . n A 1 183 ASP 183 176 176 ASP ASP A . n A 1 184 THR 184 177 177 THR THR A . n A 1 185 ARG 185 178 178 ARG ARG A . n A 1 186 MET 186 179 179 MET MET A . n A 1 187 LYS 187 180 180 LYS LYS A . n A 1 188 VAL 188 181 181 VAL VAL A . n A 1 189 ALA 189 182 182 ALA ALA A . n A 1 190 GLU 190 183 183 GLU GLU A . n A 1 191 ASN 191 184 184 ASN ASN A . n A 1 192 PRO 192 185 185 PRO PRO A . n A 1 193 LYS 193 186 186 LYS LYS A . n A 1 194 LYS 194 187 187 LYS LYS A . n A 1 195 VAL 195 188 188 VAL VAL A . n A 1 196 GLU 196 189 189 GLU GLU A . n A 1 197 ASN 197 190 190 ASN ASN A . n A 1 198 ILE 198 191 191 ILE ILE A . n A 1 199 VAL 199 192 192 VAL VAL A . n A 1 200 GLY 200 193 193 GLY GLY A . n A 1 201 ALA 201 194 194 ALA ALA A . n A 1 202 SER 202 195 195 SER SER A . n A 1 203 TYR 203 196 196 TYR TYR A . n A 1 204 ASP 204 197 197 ASP ASP A . n A 1 205 LYS 205 198 198 LYS LYS A . n A 1 206 PHE 206 199 199 PHE PHE A . n A 1 207 ASN 207 200 200 ASN ASN A . n A 1 208 GLU 208 201 201 GLU GLU A . n A 1 209 MET 209 202 202 MET MET A . n A 1 210 TYR 210 203 203 TYR TYR A . n A 1 211 ASN 211 204 204 ASN ASN A . n A 1 212 PHE 212 205 205 PHE PHE A . n A 1 213 ASN 213 206 206 ASN ASN A . n A 1 214 ASP 214 207 207 ASP ASP A . n A 1 215 LEU 215 208 208 LEU LEU A . n A 1 216 TYR 216 209 209 TYR TYR A . n A 1 217 GLN 217 210 210 GLN GLN A . n A 1 218 LYS 218 211 211 LYS LYS A . n A 1 219 ASN 219 212 212 ASN ASN A . n A 1 220 GLY 220 213 213 GLY GLY A . n A 1 221 GLU 221 214 214 GLU GLU A . n A 1 222 ARG 222 215 215 ARG ARG A . n A 1 223 ILE 223 216 216 ILE ILE A . n A 1 224 GLU 224 217 217 GLU GLU A . n A 1 225 TYR 225 218 218 TYR TYR A . n A 1 226 GLU 226 219 219 GLU GLU A . n A 1 227 ILE 227 220 220 ILE ILE A . n A 1 228 ASP 228 221 221 ASP ASP A . n A 1 229 ILE 229 222 222 ILE ILE A . n A 1 230 ASP 230 223 223 ASP ASP A . n A 1 231 GLU 231 224 224 GLU GLU A . n A 1 232 LEU 232 225 225 LEU LEU A . n A 1 233 PRO 233 226 226 PRO PRO A . n A 1 234 SER 234 227 227 SER SER A . n A 1 235 SER 235 228 228 SER SER A . n A 1 236 LEU 236 229 229 LEU LEU A . n A 1 237 GLU 237 230 230 GLU GLU A . n A 1 238 LYS 238 231 231 LYS LYS A . n A 1 239 TYR 239 232 232 TYR TYR A . n A 1 240 ILE 240 233 233 ILE ILE A . n A 1 241 LYS 241 234 234 LYS LYS A . n A 1 242 ASP 242 235 235 ASP ASP A . n A 1 243 ASP 243 236 236 ASP ASP A . n A 1 244 LYS 244 237 237 LYS LYS A . n A 1 245 THR 245 238 238 THR THR A . n A 1 246 LYS 246 239 239 LYS LYS A . n A 1 247 GLU 247 240 240 GLU GLU A . n A 1 248 LYS 248 241 241 LYS LYS A . n A 1 249 VAL 249 242 242 VAL VAL A . n A 1 250 MET 250 243 243 MET MET A . n A 1 251 GLU 251 244 244 GLU GLU A . n A 1 252 TYR 252 245 245 TYR TYR A . n A 1 253 LEU 253 246 246 LEU LEU A . n A 1 254 SER 254 247 247 SER SER A . n A 1 255 ASP 255 248 248 ASP ASP A . n A 1 256 LEU 256 249 249 LEU LEU A . n A 1 257 ASN 257 250 250 ASN ASN A . n A 1 258 ARG 258 251 251 ARG ARG A . n A 1 259 LYS 259 252 252 LYS LYS A . n A 1 260 GLU 260 253 253 GLU GLU A . n A 1 261 SER 261 254 254 SER SER A . n A 1 262 SER 262 255 255 SER SER A . n A 1 263 LEU 263 256 256 LEU LEU A . n A 1 264 GLN 264 257 257 GLN GLN A . n A 1 265 THR 265 258 258 THR THR A . n A 1 266 MET 266 259 259 MET MET A . n A 1 267 LYS 267 260 260 LYS LYS A . n A 1 268 GLY 268 261 261 GLY GLY A . n A 1 269 ILE 269 262 262 ILE ILE A . n A 1 270 LYS 270 263 263 LYS LYS A . n A 1 271 THR 271 264 264 THR THR A . n A 1 272 ASN 272 265 265 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTP 1 301 301 CTP CTP A . C 3 MG 1 302 302 MG MG A . D 4 BR 1 303 1 BR BR A . E 4 BR 1 304 2 BR BR A . F 5 HOH 1 401 3 HOH HOH A . F 5 HOH 2 402 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 820 ? 1 MORE -13 ? 1 'SSA (A^2)' 13390 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 OD2 ? A ASP 47 ? A ASP 40 ? 1_555 53.9 ? 2 OD1 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1A ? B CTP . ? A CTP 301 ? 1_555 112.0 ? 3 OD2 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1A ? B CTP . ? A CTP 301 ? 1_555 102.8 ? 4 OD1 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1B ? B CTP . ? A CTP 301 ? 1_555 86.5 ? 5 OD2 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1B ? B CTP . ? A CTP 301 ? 1_555 138.2 ? 6 O1A ? B CTP . ? A CTP 301 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1B ? B CTP . ? A CTP 301 ? 1_555 78.1 ? 7 OD1 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1G ? B CTP . ? A CTP 301 ? 1_555 152.8 ? 8 OD2 ? A ASP 47 ? A ASP 40 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1G ? B CTP . ? A CTP 301 ? 1_555 152.5 ? 9 O1A ? B CTP . ? A CTP 301 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1G ? B CTP . ? A CTP 301 ? 1_555 75.1 ? 10 O1B ? B CTP . ? A CTP 301 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O1G ? B CTP . ? A CTP 301 ? 1_555 68.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-01-19 2 'Structure model' 1 1 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.17_3644: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.entry_id 7ECD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 33 ? ? -44.99 153.47 2 1 LYS A 34 ? ? 80.08 23.01 3 1 LYS A 36 ? ? 39.99 76.09 4 1 ASP A 236 ? ? -151.21 71.32 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 17H06414 1 'Japan Society for the Promotion of Science (JSPS)' Japan 22227003 2 'Japan Agency for Medical Research and Development (AMED)' Japan JP20gm5910026 3 'Japan Agency for Medical Research and Development (AMED)' Japan JP20am0101070 4 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CTP ? ? CTP ? ? 'SUBJECT OF INVESTIGATION' ? 2 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "CYTIDINE-5'-TRIPHOSPHATE" CTP 3 'MAGNESIUM ION' MG 4 'BROMIDE ION' BR 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #