HEADER BIOSYNTHETIC PROTEIN 15-MAR-21 7ED9 TITLE CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELED THERMUS THERMOPHILUS TITLE 2 FAKA ATP-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FAKA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 GENE: TTHA0214; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FATTY ACID KINASE, ATP-BINDING PROTEIN, LIPID METABOLISM, KEYWDS 2 PHOSPHOTRANSFERASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.NAKATANI,S.NAKAHARA,K.FUKUI,T.MURAKAWA,R.MASUI REVDAT 3 29-NOV-23 7ED9 1 REMARK REVDAT 2 11-JAN-23 7ED9 1 JRNL REVDAT 1 16-MAR-22 7ED9 0 JRNL AUTH M.NAKATANI,S.Y.NAKAHARA,K.FUKUI,M.URANO,Y.FUJII,T.MURAKAWA, JRNL AUTH 2 S.BABA,T.KUMASAKA,H.OKANISHI,Y.KANAI,T.YANO,R.MASUI JRNL TITL CRYSTAL STRUCTURE OF A NUCLEOTIDE-BINDING DOMAIN OF FATTY JRNL TITL 2 ACID KINASE FAKA FROM THERMUS THERMOPHILUS HB8. JRNL REF J.STRUCT.BIOL. V. 214 07904 2022 JRNL REFN ESSN 1095-8657 JRNL PMID 36228973 JRNL DOI 10.1016/J.JSB.2022.107904 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.343 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 31444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.987 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8390 - 4.4861 1.00 2937 154 0.2006 0.2280 REMARK 3 2 4.4861 - 3.5611 1.00 2776 147 0.1902 0.2088 REMARK 3 3 3.5611 - 3.1110 1.00 2749 144 0.2175 0.2261 REMARK 3 4 3.1110 - 2.8266 1.00 2714 143 0.2353 0.2415 REMARK 3 5 2.8266 - 2.6240 1.00 2714 142 0.2480 0.3095 REMARK 3 6 2.6240 - 2.4693 1.00 2686 140 0.2418 0.2544 REMARK 3 7 2.4693 - 2.3457 1.00 2687 143 0.2516 0.2963 REMARK 3 8 2.3457 - 2.2436 0.99 2669 140 0.2587 0.2954 REMARK 3 9 2.2436 - 2.1572 1.00 2650 140 0.2928 0.2956 REMARK 3 10 2.1572 - 2.0828 0.99 2677 139 0.3093 0.3335 REMARK 3 11 2.0828 - 2.0177 0.99 2617 136 0.3514 0.3372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.867 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2999 REMARK 3 ANGLE : 0.658 4077 REMARK 3 CHIRALITY : 0.037 466 REMARK 3 PLANARITY : 0.004 527 REMARK 3 DIHEDRAL : 16.021 1783 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ -1:198) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9711 -24.8701 -13.0311 REMARK 3 T TENSOR REMARK 3 T11: 0.3155 T22: 0.2456 REMARK 3 T33: 0.2917 T12: 0.0145 REMARK 3 T13: 0.0010 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.8376 L22: 1.0292 REMARK 3 L33: 1.8255 L12: 0.8861 REMARK 3 L13: 0.0159 L23: 0.1977 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.0224 S13: -0.0440 REMARK 3 S21: 0.1203 S22: -0.0283 S23: 0.0203 REMARK 3 S31: 0.2947 S32: -0.0598 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 4:198) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4333 -17.2015 13.2000 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.3401 REMARK 3 T33: 0.3019 T12: -0.0777 REMARK 3 T13: 0.0351 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.7861 L22: 1.5690 REMARK 3 L33: 2.2254 L12: 1.0505 REMARK 3 L13: 0.2788 L23: 0.6258 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: -0.1518 S13: -0.0028 REMARK 3 S21: 0.1482 S22: -0.1789 S23: 0.0138 REMARK 3 S31: 0.2714 S32: -0.3922 S33: -0.0077 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 4:11 OR (RESID 12 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME C OR NAME O )) OR RESSEQ 13:21 REMARK 3 OR (RESID 22 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME C OR NAME O )) OR RESSEQ REMARK 3 23:25 OR (RESID 26 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 27:64 OR RESSEQ 66:79 OR (RESID 80 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 81:91 OR RESSEQ 93:101 OR (RESID REMARK 3 102 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME C OR NAME O )) OR RESSEQ 103:109 OR REMARK 3 (RESID 110 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG OR NAME CD OR NAME NE OR REMARK 3 NAME C OR NAME O )) OR RESSEQ 111:120 OR REMARK 3 RESSEQ 122:125 OR (RESID 126 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 C OR NAME O )) OR RESSEQ 127:145 OR REMARK 3 (RESID 146 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 147: REMARK 3 159 OR (RESID 161 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME CG OR NAME C OR NAME O REMARK 3 )) OR RESSEQ 162:164 OR RESSEQ 166:167 OR REMARK 3 RESSEQ 169:173 OR RESSEQ 175:198)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 4:64 OR RESSEQ 66:91 REMARK 3 OR RESSEQ 93:110 OR (RESID 111 AND (NAME REMARK 3 N OR NAME CA OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME NE OR NAME C OR NAME O )) REMARK 3 OR RESSEQ 112:113 OR (RESID 114 AND (NAME REMARK 3 N OR NAME CA OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME C OR NAME O )) OR RESSEQ REMARK 3 115:120 OR RESSEQ 122:159 OR RESSEQ 161: REMARK 3 164 OR RESSEQ 166:167 OR RESSEQ 169:173 REMARK 3 OR RESSEQ 175:198)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ED9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31444 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.018 REMARK 200 RESOLUTION RANGE LOW (A) : 47.939 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10.1_2155 REMARK 200 STARTING MODEL: 7ED6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M SODIUM CHLORIDE, 0.1M TRIS-HCL PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.45000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.45000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.15000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ALA A 2 CB REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 26 CD OE1 OE2 REMARK 470 ARG A 63 CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CD CE NZ REMARK 470 ARG A 111 CZ NH1 NH2 REMARK 470 ARG A 114 NE CZ NH1 NH2 REMARK 470 LYS A 122 CD CE NZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 GLU B 12 CD OE1 OE2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 ARG B 63 CD NE CZ NH1 NH2 REMARK 470 ARG B 80 NE CZ NH1 NH2 REMARK 470 LYS B 99 CD CE NZ REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 110 CZ NH1 NH2 REMARK 470 LYS B 122 CD CE NZ REMARK 470 ARG B 126 CD NE CZ NH1 NH2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 GLU B 161 CD OE1 OE2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -60.33 63.55 REMARK 500 GLU A 3 50.50 -111.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 32 OD1 REMARK 620 2 ASP A 38 OD1 76.0 REMARK 620 3 ASP A 40 OD1 92.6 86.8 REMARK 620 4 ADP A 201 O2B 168.4 113.1 95.0 REMARK 620 5 ADP A 201 O2A 89.4 164.9 97.6 81.0 REMARK 620 6 HOH A 313 O 84.2 87.4 173.9 88.9 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD2 REMARK 620 2 ASP A 40 OD2 92.7 REMARK 620 3 ADP A 201 O2B 94.2 85.5 REMARK 620 4 HOH A 349 O 177.9 89.4 86.2 REMARK 620 5 HOH A 359 O 86.1 178.7 94.1 91.8 REMARK 620 6 HOH A 360 O 98.0 90.0 167.2 81.7 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 32 OD1 REMARK 620 2 ASP B 38 OD1 79.2 REMARK 620 3 ASP B 40 OD1 86.5 91.8 REMARK 620 4 ADP B 201 O1B 166.0 114.4 96.1 REMARK 620 5 ADP B 201 O1A 86.0 164.3 92.3 80.2 REMARK 620 6 HOH B 309 O 87.2 85.6 173.5 90.3 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 38 OD2 REMARK 620 2 ASP B 40 OD2 99.9 REMARK 620 3 ADP B 201 O1B 96.7 92.8 REMARK 620 4 HOH B 326 O 164.9 94.9 85.2 REMARK 620 5 HOH B 335 O 79.3 172.3 94.9 85.7 REMARK 620 6 HOH B 336 O 92.7 88.2 170.3 85.1 84.2 REMARK 620 N 1 2 3 4 5 DBREF 7ED9 A 1 198 UNP Q5SLS9 Q5SLS9_THET8 1 198 DBREF 7ED9 B 1 198 UNP Q5SLS9 Q5SLS9_THET8 1 198 SEQADV 7ED9 MET A -20 UNP Q5SLS9 INITIATING METHIONINE SEQADV 7ED9 GLY A -19 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER A -18 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER A -17 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A -16 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A -15 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A -14 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A -13 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A -12 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A -11 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER A -10 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER A -9 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLY A -8 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLU A -7 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 ASN A -6 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 LEU A -5 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 TYR A -4 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 PHE A -3 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLN A -2 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLY A -1 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS A 0 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 MET B -20 UNP Q5SLS9 INITIATING METHIONINE SEQADV 7ED9 GLY B -19 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER B -18 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER B -17 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B -16 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B -15 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B -14 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B -13 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B -12 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B -11 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER B -10 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 SER B -9 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLY B -8 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLU B -7 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 ASN B -6 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 LEU B -5 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 TYR B -4 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 PHE B -3 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLN B -2 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 GLY B -1 UNP Q5SLS9 EXPRESSION TAG SEQADV 7ED9 HIS B 0 UNP Q5SLS9 EXPRESSION TAG SEQRES 1 A 219 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 219 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA GLU ALA TRP SEQRES 3 A 219 GLY PRO GLU ALA VAL ALA GLU ALA PHE ARG TYR ALA THR SEQRES 4 A 219 ARG TRP PHE GLN VAL TYR VAL GLU GLU LEU ASN ALA LEU SEQRES 5 A 219 ASN VAL TYR PRO VAL PRO ASP GLY ASP THR GLY THR ASN SEQRES 6 A 219 MET LEU HIS THR LEU GLU ALA ALA ARG ARG GLU LEU ASP SEQRES 7 A 219 LEU ALA ASP THR SER ARG MET ASP GLN VAL ALA ARG ALA SEQRES 8 A 219 LEU ALA TYR GLY SER LEU LEU GLY ALA ARG GLY ASN SER SEQRES 9 A 219 GLY VAL ILE LEU SER GLN ILE LEU ARG GLY PHE ALA GLU SEQRES 10 A 219 ALA LEU LYS GLY LYS ARG ALA LEU ASP GLY SER LEU LEU SEQRES 11 A 219 ARG ARG ALA LEU ARG MET GLY ALA GLU SER GLY TYR LYS SEQRES 12 A 219 ALA VAL MET ARG PRO VAL GLU GLY THR ILE LEU THR VAL SEQRES 13 A 219 ALA ARG ALA ALA GLY GLU GLY ALA ARG GLY GLU ALA LEU SEQRES 14 A 219 GLU GLU VAL LEU GLU THR ALA LEU GLU ALA ALA ARG GLU SEQRES 15 A 219 ALA LEU GLU ARG THR PRO GLU LEU LEU PRO VAL LEU ARG SEQRES 16 A 219 GLN ALA GLY VAL VAL ASP ALA GLY GLY ALA GLY TYR VAL SEQRES 17 A 219 ARG LEU LEU GLU GLY MET ARG GLY TYR ALA LEU SEQRES 1 B 219 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 219 GLU ASN LEU TYR PHE GLN GLY HIS MET ALA GLU ALA TRP SEQRES 3 B 219 GLY PRO GLU ALA VAL ALA GLU ALA PHE ARG TYR ALA THR SEQRES 4 B 219 ARG TRP PHE GLN VAL TYR VAL GLU GLU LEU ASN ALA LEU SEQRES 5 B 219 ASN VAL TYR PRO VAL PRO ASP GLY ASP THR GLY THR ASN SEQRES 6 B 219 MET LEU HIS THR LEU GLU ALA ALA ARG ARG GLU LEU ASP SEQRES 7 B 219 LEU ALA ASP THR SER ARG MET ASP GLN VAL ALA ARG ALA SEQRES 8 B 219 LEU ALA TYR GLY SER LEU LEU GLY ALA ARG GLY ASN SER SEQRES 9 B 219 GLY VAL ILE LEU SER GLN ILE LEU ARG GLY PHE ALA GLU SEQRES 10 B 219 ALA LEU LYS GLY LYS ARG ALA LEU ASP GLY SER LEU LEU SEQRES 11 B 219 ARG ARG ALA LEU ARG MET GLY ALA GLU SER GLY TYR LYS SEQRES 12 B 219 ALA VAL MET ARG PRO VAL GLU GLY THR ILE LEU THR VAL SEQRES 13 B 219 ALA ARG ALA ALA GLY GLU GLY ALA ARG GLY GLU ALA LEU SEQRES 14 B 219 GLU GLU VAL LEU GLU THR ALA LEU GLU ALA ALA ARG GLU SEQRES 15 B 219 ALA LEU GLU ARG THR PRO GLU LEU LEU PRO VAL LEU ARG SEQRES 16 B 219 GLN ALA GLY VAL VAL ASP ALA GLY GLY ALA GLY TYR VAL SEQRES 17 B 219 ARG LEU LEU GLU GLY MET ARG GLY TYR ALA LEU HET ADP A 201 27 HET MG A 202 1 HET MG A 203 1 HET ADP B 201 27 HET MG B 202 1 HET MG B 203 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *108(H2 O) HELIX 1 AA1 GLY A 6 GLN A 22 1 17 HELIX 2 AA2 TYR A 24 ASN A 32 1 9 HELIX 3 AA3 ASP A 40 ALA A 59 1 20 HELIX 4 AA4 ARG A 63 ALA A 79 1 17 HELIX 5 AA5 ARG A 80 LYS A 99 1 20 HELIX 6 AA6 GLY A 106 VAL A 124 1 19 HELIX 7 AA7 THR A 131 ALA A 143 1 13 HELIX 8 AA8 ALA A 147 ARG A 165 1 19 HELIX 9 AA9 ARG A 165 LEU A 170 1 6 HELIX 10 AB1 LEU A 170 GLY A 177 1 8 HELIX 11 AB2 ASP A 180 LEU A 198 1 19 HELIX 12 AB3 GLY B 6 GLN B 22 1 17 HELIX 13 AB4 TYR B 24 ASN B 32 1 9 HELIX 14 AB5 ASP B 40 ALA B 59 1 20 HELIX 15 AB6 ARG B 63 ALA B 79 1 17 HELIX 16 AB7 ARG B 80 LYS B 99 1 20 HELIX 17 AB8 ASP B 105 VAL B 124 1 20 HELIX 18 AB9 THR B 131 ALA B 143 1 13 HELIX 19 AC1 ALA B 147 LEU B 170 1 24 HELIX 20 AC2 LEU B 170 GLY B 177 1 8 HELIX 21 AC3 ASP B 180 LEU B 198 1 19 SHEET 1 AA1 2 ALA A 4 TRP A 5 0 SHEET 2 AA1 2 LEU A 104 ASP A 105 -1 O LEU A 104 N TRP A 5 LINK OD1 ASN A 32 MG MG A 202 1555 1555 2.21 LINK OD1 ASP A 38 MG MG A 202 1555 1555 2.20 LINK OD2 ASP A 38 MG MG A 203 1555 1555 2.18 LINK OD1 ASP A 40 MG MG A 202 1555 1555 2.02 LINK OD2 ASP A 40 MG MG A 203 1555 1555 2.38 LINK O2B ADP A 201 MG MG A 202 1555 1555 2.09 LINK O2A ADP A 201 MG MG A 202 1555 1555 2.03 LINK O2B ADP A 201 MG MG A 203 1555 1555 2.49 LINK MG MG A 202 O HOH A 313 1555 1555 2.16 LINK MG MG A 203 O HOH A 349 1555 1555 2.47 LINK MG MG A 203 O HOH A 359 1555 1555 2.78 LINK MG MG A 203 O HOH A 360 1555 1555 2.45 LINK OD1 ASN B 32 MG MG B 202 1555 1555 2.20 LINK OD1 ASP B 38 MG MG B 202 1555 1555 2.17 LINK OD2 ASP B 38 MG MG B 203 1555 1555 2.09 LINK OD1 ASP B 40 MG MG B 202 1555 1555 2.03 LINK OD2 ASP B 40 MG MG B 203 1555 1555 2.29 LINK O1B ADP B 201 MG MG B 202 1555 1555 2.04 LINK O1A ADP B 201 MG MG B 202 1555 1555 2.12 LINK O1B ADP B 201 MG MG B 203 1555 1555 2.46 LINK MG MG B 202 O HOH B 309 1555 1555 2.17 LINK MG MG B 203 O HOH B 326 1555 1555 2.28 LINK MG MG B 203 O HOH B 335 1555 1555 3.00 LINK MG MG B 203 O HOH B 336 1555 1555 2.53 CISPEP 1 TYR A 34 PRO A 35 0 -0.30 CISPEP 2 TYR B 34 PRO B 35 0 0.41 CRYST1 90.740 90.740 112.600 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008881 0.00000