data_7EDC # _entry.id 7EDC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7EDC pdb_00007edc 10.2210/pdb7edc/pdb WWPDB D_1300021196 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7EDC _pdbx_database_status.recvd_initial_deposition_date 2021-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kono, Y.' 1 ? 'Ito, A.' 2 ? 'Okamoto, A.' 3 ? 'Yamagami, R.' 4 ? 'Hirata, A.' 5 ? 'Hori, H.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Unique substrate specificity of type II tRNA Gm18 methyltransferase from Escherichia coli' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kono, Y.' 1 ? primary 'Ito, A.' 2 ? primary 'Okamoto, A.' 3 ? primary 'Yamagami, R.' 4 ? primary 'Hirata, A.' 5 ? primary 'Hori, H.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 122.965 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7EDC _cell.details ? _cell.formula_units_Z ? _cell.length_a 84.791 _cell.length_a_esd ? _cell.length_b 60.942 _cell.length_b_esd ? _cell.length_c 67.906 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;tRNA (guanosine(18)-2'-O)-methyltransferase ; 27472.396 1 2.1.1.34 ? ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 66 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'tRNA [Gm18] methyltransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTM ASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFRGIDYTRPTCILMGQEKTGITQEALALADQDIIIP MIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADAD WWATMQAAG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTM ASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFRGIDYTRPTCILMGQEKTGITQEALALADQDIIIP MIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADAD WWATMQAAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ASN n 1 23 PRO n 1 24 THR n 1 25 ARG n 1 26 TYR n 1 27 ALA n 1 28 ARG n 1 29 ILE n 1 30 CYS n 1 31 GLU n 1 32 MET n 1 33 LEU n 1 34 ALA n 1 35 ARG n 1 36 ARG n 1 37 GLN n 1 38 PRO n 1 39 ASP n 1 40 LEU n 1 41 THR n 1 42 VAL n 1 43 CYS n 1 44 MET n 1 45 GLU n 1 46 GLN n 1 47 VAL n 1 48 HIS n 1 49 LYS n 1 50 PRO n 1 51 HIS n 1 52 ASN n 1 53 VAL n 1 54 SER n 1 55 ALA n 1 56 ILE n 1 57 ILE n 1 58 ARG n 1 59 THR n 1 60 ALA n 1 61 ASP n 1 62 ALA n 1 63 VAL n 1 64 GLY n 1 65 VAL n 1 66 HIS n 1 67 GLU n 1 68 VAL n 1 69 HIS n 1 70 ALA n 1 71 VAL n 1 72 TRP n 1 73 PRO n 1 74 GLY n 1 75 SER n 1 76 ARG n 1 77 MET n 1 78 ARG n 1 79 THR n 1 80 MET n 1 81 ALA n 1 82 SER n 1 83 ALA n 1 84 ALA n 1 85 ALA n 1 86 GLY n 1 87 SER n 1 88 ASN n 1 89 SER n 1 90 TRP n 1 91 VAL n 1 92 GLN n 1 93 VAL n 1 94 LYS n 1 95 THR n 1 96 HIS n 1 97 ARG n 1 98 THR n 1 99 ILE n 1 100 GLY n 1 101 ASP n 1 102 ALA n 1 103 VAL n 1 104 ALA n 1 105 HIS n 1 106 LEU n 1 107 LYS n 1 108 GLY n 1 109 GLN n 1 110 GLY n 1 111 MET n 1 112 GLN n 1 113 ILE n 1 114 LEU n 1 115 ALA n 1 116 THR n 1 117 HIS n 1 118 LEU n 1 119 SER n 1 120 ASP n 1 121 ASN n 1 122 ALA n 1 123 VAL n 1 124 ASP n 1 125 PHE n 1 126 ARG n 1 127 GLY n 1 128 ILE n 1 129 ASP n 1 130 TYR n 1 131 THR n 1 132 ARG n 1 133 PRO n 1 134 THR n 1 135 CYS n 1 136 ILE n 1 137 LEU n 1 138 MET n 1 139 GLY n 1 140 GLN n 1 141 GLU n 1 142 LYS n 1 143 THR n 1 144 GLY n 1 145 ILE n 1 146 THR n 1 147 GLN n 1 148 GLU n 1 149 ALA n 1 150 LEU n 1 151 ALA n 1 152 LEU n 1 153 ALA n 1 154 ASP n 1 155 GLN n 1 156 ASP n 1 157 ILE n 1 158 ILE n 1 159 ILE n 1 160 PRO n 1 161 MET n 1 162 ILE n 1 163 GLY n 1 164 MET n 1 165 VAL n 1 166 GLN n 1 167 SER n 1 168 LEU n 1 169 ASN n 1 170 VAL n 1 171 SER n 1 172 VAL n 1 173 ALA n 1 174 SER n 1 175 ALA n 1 176 LEU n 1 177 ILE n 1 178 LEU n 1 179 TYR n 1 180 GLU n 1 181 ALA n 1 182 GLN n 1 183 ARG n 1 184 GLN n 1 185 ARG n 1 186 GLN n 1 187 ASN n 1 188 ALA n 1 189 GLY n 1 190 MET n 1 191 TYR n 1 192 LEU n 1 193 ARG n 1 194 GLU n 1 195 ASN n 1 196 SER n 1 197 MET n 1 198 LEU n 1 199 PRO n 1 200 GLU n 1 201 ALA n 1 202 GLU n 1 203 GLN n 1 204 GLN n 1 205 ARG n 1 206 LEU n 1 207 LEU n 1 208 PHE n 1 209 GLU n 1 210 GLY n 1 211 GLY n 1 212 TYR n 1 213 PRO n 1 214 VAL n 1 215 LEU n 1 216 ALA n 1 217 LYS n 1 218 VAL n 1 219 ALA n 1 220 LYS n 1 221 ARG n 1 222 LYS n 1 223 GLY n 1 224 LEU n 1 225 PRO n 1 226 TYR n 1 227 PRO n 1 228 HIS n 1 229 VAL n 1 230 ASN n 1 231 GLN n 1 232 GLN n 1 233 GLY n 1 234 GLU n 1 235 ILE n 1 236 GLU n 1 237 ALA n 1 238 ASP n 1 239 ALA n 1 240 ASP n 1 241 TRP n 1 242 TRP n 1 243 ALA n 1 244 THR n 1 245 MET n 1 246 GLN n 1 247 ALA n 1 248 ALA n 1 249 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 249 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene trmH _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C3SM77_ECOLX _struct_ref.pdbx_db_accession C3SM77 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIG DAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE AQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7EDC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 249 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C3SM77 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 229 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 229 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7EDC MET A 1 ? UNP C3SM77 ? ? 'initiating methionine' -19 1 1 7EDC GLY A 2 ? UNP C3SM77 ? ? 'expression tag' -18 2 1 7EDC SER A 3 ? UNP C3SM77 ? ? 'expression tag' -17 3 1 7EDC SER A 4 ? UNP C3SM77 ? ? 'expression tag' -16 4 1 7EDC HIS A 5 ? UNP C3SM77 ? ? 'expression tag' -15 5 1 7EDC HIS A 6 ? UNP C3SM77 ? ? 'expression tag' -14 6 1 7EDC HIS A 7 ? UNP C3SM77 ? ? 'expression tag' -13 7 1 7EDC HIS A 8 ? UNP C3SM77 ? ? 'expression tag' -12 8 1 7EDC HIS A 9 ? UNP C3SM77 ? ? 'expression tag' -11 9 1 7EDC HIS A 10 ? UNP C3SM77 ? ? 'expression tag' -10 10 1 7EDC SER A 11 ? UNP C3SM77 ? ? 'expression tag' -9 11 1 7EDC SER A 12 ? UNP C3SM77 ? ? 'expression tag' -8 12 1 7EDC GLY A 13 ? UNP C3SM77 ? ? 'expression tag' -7 13 1 7EDC LEU A 14 ? UNP C3SM77 ? ? 'expression tag' -6 14 1 7EDC VAL A 15 ? UNP C3SM77 ? ? 'expression tag' -5 15 1 7EDC PRO A 16 ? UNP C3SM77 ? ? 'expression tag' -4 16 1 7EDC ARG A 17 ? UNP C3SM77 ? ? 'expression tag' -3 17 1 7EDC GLY A 18 ? UNP C3SM77 ? ? 'expression tag' -2 18 1 7EDC SER A 19 ? UNP C3SM77 ? ? 'expression tag' -1 19 1 7EDC HIS A 20 ? UNP C3SM77 ? ? 'expression tag' 0 20 1 7EDC GLY A 127 ? UNP C3SM77 GLU 107 'engineered mutation' 107 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7EDC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG6000, HEPES, MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7EDC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.946 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21319 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 41.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.960 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 1.98 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1060 _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.734 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.004 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.004 _refine.aniso_B[2][2] 0.006 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] 0.002 _refine.B_iso_max ? _refine.B_iso_mean 45.254 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7EDC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.946 _refine.ls_d_res_low 30.977 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21319 _refine.ls_number_reflns_R_free 1110 _refine.ls_number_reflns_R_work 20209 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.436 _refine.ls_percent_reflns_R_free 5.207 _refine.ls_R_factor_all 0.204 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2421 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2024 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.158 _refine.pdbx_overall_ESU_R_Free 0.148 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.066 _refine.overall_SU_ML 0.115 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1820 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1918 _refine_hist.d_res_high 1.946 _refine_hist.d_res_low 30.977 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.013 1899 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.017 1819 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.669 1.639 2582 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.336 1.577 4169 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.903 5.000 239 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 34.691 21.500 100 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.940 15.000 320 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 20.041 15.000 16 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 254 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 2171 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 436 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.220 0.200 408 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.206 0.200 1828 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.158 0.200 882 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.082 0.200 944 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.151 0.200 71 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.021 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.157 0.200 16 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.237 0.200 112 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.161 0.200 6 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 4.159 4.465 950 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 4.088 4.466 950 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 5.192 6.677 1185 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 5.191 6.681 1186 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 5.208 5.105 948 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.133 5.102 944 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 7.331 7.450 1395 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 7.290 7.446 1390 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 9.038 54.021 2085 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 9.048 54.003 2080 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.946 1.996 . . 80 1462 97.9048 . . . 0.306 . 0.287 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.996 2.051 . . 79 1450 100.0000 . . . 0.312 . 0.259 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.051 2.110 . . 90 1389 99.8650 . . . 0.264 . 0.248 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.110 2.175 . . 75 1411 99.9327 . . . 0.271 . 0.225 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.175 2.246 . . 85 1296 100.0000 . . . 0.287 . 0.216 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.246 2.325 . . 65 1299 99.9267 . . . 0.280 . 0.222 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.325 2.413 . . 59 1248 99.9235 . . . 0.329 . 0.215 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.413 2.511 . . 58 1217 99.9216 . . . 0.252 . 0.210 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.511 2.622 . . 64 1141 100.0000 . . . 0.226 . 0.194 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.622 2.750 . . 59 1114 99.9148 . . . 0.248 . 0.194 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.750 2.898 . . 53 1042 100.0000 . . . 0.225 . 0.208 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.898 3.073 . . 67 991 100.0000 . . . 0.254 . 0.210 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.073 3.284 . . 52 921 99.8973 . . . 0.225 . 0.216 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.284 3.545 . . 44 874 99.7826 . . . 0.278 . 0.205 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.545 3.882 . . 48 792 100.0000 . . . 0.230 . 0.199 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.882 4.336 . . 45 742 99.7465 . . . 0.183 . 0.171 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.336 4.999 . . 24 641 99.8499 . . . 0.216 . 0.162 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.999 6.105 . . 26 560 100.0000 . . . 0.258 . 0.209 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.105 8.560 . . 31 427 98.9201 . . . 0.273 . 0.195 . . . . . . . . . . . 'X-RAY DIFFRACTION' 8.560 30.977 . . 6 192 74.1573 . . . 0.140 . 0.244 . . . . . . . . . . . # _struct.entry_id 7EDC _struct.title ;Crystal structure of mutant tRNA [Gm18] methyltransferase TrmH (E107G) in complex with S-adenosyl-L-methionine from Escherichia coli ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7EDC _struct_keywords.text ;tRNA modification, 2-O' methylation, TrmH, Escherichia coli, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 22 ? ARG A 35 ? ASN A 2 ARG A 15 1 ? 14 HELX_P HELX_P2 AA2 LYS A 49 ? VAL A 63 ? LYS A 29 VAL A 43 1 ? 15 HELX_P HELX_P3 AA3 GLY A 74 ? ALA A 81 ? GLY A 54 ALA A 61 1 ? 8 HELX_P HELX_P4 AA4 ALA A 81 ? GLY A 86 ? ALA A 61 GLY A 66 1 ? 6 HELX_P HELX_P5 AA5 THR A 98 ? GLN A 109 ? THR A 78 GLN A 89 1 ? 12 HELX_P HELX_P6 AA6 ARG A 126 ? ILE A 128 ? ARG A 106 ILE A 108 5 ? 3 HELX_P HELX_P7 AA7 THR A 146 ? ALA A 153 ? THR A 126 ALA A 133 1 ? 8 HELX_P HELX_P8 AA8 ASN A 169 ? ALA A 188 ? ASN A 149 ALA A 168 1 ? 20 HELX_P HELX_P9 AA9 PRO A 199 ? TYR A 212 ? PRO A 179 TYR A 192 1 ? 14 HELX_P HELX_P10 AB1 TYR A 212 ? LYS A 222 ? TYR A 192 LYS A 202 1 ? 11 HELX_P HELX_P11 AB2 ASP A 238 ? ALA A 247 ? ASP A 218 ALA A 227 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 141 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 121 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LYS _struct_mon_prot_cis.pdbx_label_seq_id_2 142 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 122 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -28.89 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 92 ? HIS A 96 ? GLN A 72 HIS A 76 AA1 2 GLU A 67 ? VAL A 71 ? GLU A 47 VAL A 51 AA1 3 LEU A 40 ? GLU A 45 ? LEU A 20 GLU A 25 AA1 4 THR A 134 ? GLY A 139 ? THR A 114 GLY A 119 AA1 5 GLN A 112 ? THR A 116 ? GLN A 92 THR A 96 AA1 6 GLN A 155 ? ILE A 158 ? GLN A 135 ILE A 138 AA1 7 VAL A 123 ? ASP A 124 ? VAL A 103 ASP A 104 AA2 1 HIS A 228 ? VAL A 229 ? HIS A 208 VAL A 209 AA2 2 ILE A 235 ? GLU A 236 ? ILE A 215 GLU A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN A 92 ? O GLN A 72 N VAL A 68 ? N VAL A 48 AA1 2 3 O VAL A 71 ? O VAL A 51 N MET A 44 ? N MET A 24 AA1 3 4 N GLU A 45 ? N GLU A 25 O MET A 138 ? O MET A 118 AA1 4 5 O LEU A 137 ? O LEU A 117 N LEU A 114 ? N LEU A 94 AA1 5 6 N ALA A 115 ? N ALA A 95 O GLN A 155 ? O GLN A 135 AA1 6 7 O ASP A 156 ? O ASP A 136 N VAL A 123 ? N VAL A 103 AA2 1 2 N HIS A 228 ? N HIS A 208 O GLU A 236 ? O GLU A 216 # _atom_sites.entry_id 7EDC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011794 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007649 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016409 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.273 S 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 1.056 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 14 LEU LEU A . n A 1 15 VAL 15 -5 15 VAL VAL A . n A 1 16 PRO 16 -4 16 PRO PRO A . n A 1 17 ARG 17 -3 17 ARG ARG A . n A 1 18 GLY 18 -2 18 GLY GLY A . n A 1 19 SER 19 -1 19 SER SER A . n A 1 20 HIS 20 0 20 HIS HIS A . n A 1 21 MET 21 1 21 MET MET A . n A 1 22 ASN 22 2 22 ASN ASN A . n A 1 23 PRO 23 3 23 PRO PRO A . n A 1 24 THR 24 4 24 THR THR A . n A 1 25 ARG 25 5 25 ARG ARG A . n A 1 26 TYR 26 6 26 TYR TYR A . n A 1 27 ALA 27 7 27 ALA ALA A . n A 1 28 ARG 28 8 28 ARG ARG A . n A 1 29 ILE 29 9 29 ILE ILE A . n A 1 30 CYS 30 10 30 CYS CYS A . n A 1 31 GLU 31 11 31 GLU GLU A . n A 1 32 MET 32 12 32 MET MET A . n A 1 33 LEU 33 13 33 LEU LEU A . n A 1 34 ALA 34 14 34 ALA ALA A . n A 1 35 ARG 35 15 35 ARG ARG A . n A 1 36 ARG 36 16 36 ARG ARG A . n A 1 37 GLN 37 17 37 GLN GLN A . n A 1 38 PRO 38 18 38 PRO PRO A . n A 1 39 ASP 39 19 39 ASP ASP A . n A 1 40 LEU 40 20 40 LEU LEU A . n A 1 41 THR 41 21 41 THR THR A . n A 1 42 VAL 42 22 42 VAL VAL A . n A 1 43 CYS 43 23 43 CYS CYS A . n A 1 44 MET 44 24 44 MET MET A . n A 1 45 GLU 45 25 45 GLU GLU A . n A 1 46 GLN 46 26 46 GLN GLN A . n A 1 47 VAL 47 27 47 VAL VAL A . n A 1 48 HIS 48 28 48 HIS HIS A . n A 1 49 LYS 49 29 49 LYS LYS A . n A 1 50 PRO 50 30 50 PRO PRO A . n A 1 51 HIS 51 31 51 HIS HIS A . n A 1 52 ASN 52 32 52 ASN ASN A . n A 1 53 VAL 53 33 53 VAL VAL A . n A 1 54 SER 54 34 54 SER SER A . n A 1 55 ALA 55 35 55 ALA ALA A . n A 1 56 ILE 56 36 56 ILE ILE A . n A 1 57 ILE 57 37 57 ILE ILE A . n A 1 58 ARG 58 38 58 ARG ARG A . n A 1 59 THR 59 39 59 THR THR A . n A 1 60 ALA 60 40 60 ALA ALA A . n A 1 61 ASP 61 41 61 ASP ASP A . n A 1 62 ALA 62 42 62 ALA ALA A . n A 1 63 VAL 63 43 63 VAL VAL A . n A 1 64 GLY 64 44 64 GLY GLY A . n A 1 65 VAL 65 45 65 VAL VAL A . n A 1 66 HIS 66 46 66 HIS HIS A . n A 1 67 GLU 67 47 67 GLU GLU A . n A 1 68 VAL 68 48 68 VAL VAL A . n A 1 69 HIS 69 49 69 HIS HIS A . n A 1 70 ALA 70 50 70 ALA ALA A . n A 1 71 VAL 71 51 71 VAL VAL A . n A 1 72 TRP 72 52 72 TRP TRP A . n A 1 73 PRO 73 53 73 PRO PRO A . n A 1 74 GLY 74 54 74 GLY GLY A . n A 1 75 SER 75 55 75 SER SER A . n A 1 76 ARG 76 56 76 ARG ARG A . n A 1 77 MET 77 57 77 MET MET A . n A 1 78 ARG 78 58 78 ARG ARG A . n A 1 79 THR 79 59 79 THR THR A . n A 1 80 MET 80 60 80 MET MET A . n A 1 81 ALA 81 61 81 ALA ALA A . n A 1 82 SER 82 62 82 SER SER A . n A 1 83 ALA 83 63 83 ALA ALA A . n A 1 84 ALA 84 64 84 ALA ALA A . n A 1 85 ALA 85 65 85 ALA ALA A . n A 1 86 GLY 86 66 86 GLY GLY A . n A 1 87 SER 87 67 87 SER SER A . n A 1 88 ASN 88 68 88 ASN ASN A . n A 1 89 SER 89 69 89 SER SER A . n A 1 90 TRP 90 70 90 TRP TRP A . n A 1 91 VAL 91 71 91 VAL VAL A . n A 1 92 GLN 92 72 92 GLN GLN A . n A 1 93 VAL 93 73 93 VAL VAL A . n A 1 94 LYS 94 74 94 LYS LYS A . n A 1 95 THR 95 75 95 THR THR A . n A 1 96 HIS 96 76 96 HIS HIS A . n A 1 97 ARG 97 77 97 ARG ARG A . n A 1 98 THR 98 78 98 THR THR A . n A 1 99 ILE 99 79 99 ILE ILE A . n A 1 100 GLY 100 80 100 GLY GLY A . n A 1 101 ASP 101 81 101 ASP ASP A . n A 1 102 ALA 102 82 102 ALA ALA A . n A 1 103 VAL 103 83 103 VAL VAL A . n A 1 104 ALA 104 84 104 ALA ALA A . n A 1 105 HIS 105 85 105 HIS HIS A . n A 1 106 LEU 106 86 106 LEU LEU A . n A 1 107 LYS 107 87 107 LYS LYS A . n A 1 108 GLY 108 88 108 GLY GLY A . n A 1 109 GLN 109 89 109 GLN GLN A . n A 1 110 GLY 110 90 110 GLY GLY A . n A 1 111 MET 111 91 111 MET MET A . n A 1 112 GLN 112 92 112 GLN GLN A . n A 1 113 ILE 113 93 113 ILE ILE A . n A 1 114 LEU 114 94 114 LEU LEU A . n A 1 115 ALA 115 95 115 ALA ALA A . n A 1 116 THR 116 96 116 THR THR A . n A 1 117 HIS 117 97 117 HIS HIS A . n A 1 118 LEU 118 98 118 LEU LEU A . n A 1 119 SER 119 99 119 SER SER A . n A 1 120 ASP 120 100 120 ASP ASP A . n A 1 121 ASN 121 101 121 ASN ASN A . n A 1 122 ALA 122 102 122 ALA ALA A . n A 1 123 VAL 123 103 123 VAL VAL A . n A 1 124 ASP 124 104 124 ASP ASP A . n A 1 125 PHE 125 105 125 PHE PHE A . n A 1 126 ARG 126 106 126 ARG ARG A . n A 1 127 GLY 127 107 127 GLY GLY A . n A 1 128 ILE 128 108 128 ILE ILE A . n A 1 129 ASP 129 109 129 ASP ASP A . n A 1 130 TYR 130 110 130 TYR TYR A . n A 1 131 THR 131 111 131 THR THR A . n A 1 132 ARG 132 112 132 ARG ARG A . n A 1 133 PRO 133 113 133 PRO PRO A . n A 1 134 THR 134 114 134 THR THR A . n A 1 135 CYS 135 115 135 CYS CYS A . n A 1 136 ILE 136 116 136 ILE ILE A . n A 1 137 LEU 137 117 137 LEU LEU A . n A 1 138 MET 138 118 138 MET MET A . n A 1 139 GLY 139 119 139 GLY GLY A . n A 1 140 GLN 140 120 140 GLN GLN A . n A 1 141 GLU 141 121 141 GLU GLU A . n A 1 142 LYS 142 122 142 LYS LYS A . n A 1 143 THR 143 123 143 THR THR A . n A 1 144 GLY 144 124 144 GLY GLY A . n A 1 145 ILE 145 125 145 ILE ILE A . n A 1 146 THR 146 126 146 THR THR A . n A 1 147 GLN 147 127 147 GLN GLN A . n A 1 148 GLU 148 128 148 GLU GLU A . n A 1 149 ALA 149 129 149 ALA ALA A . n A 1 150 LEU 150 130 150 LEU LEU A . n A 1 151 ALA 151 131 151 ALA ALA A . n A 1 152 LEU 152 132 152 LEU LEU A . n A 1 153 ALA 153 133 153 ALA ALA A . n A 1 154 ASP 154 134 154 ASP ASP A . n A 1 155 GLN 155 135 155 GLN GLN A . n A 1 156 ASP 156 136 156 ASP ASP A . n A 1 157 ILE 157 137 157 ILE ILE A . n A 1 158 ILE 158 138 158 ILE ILE A . n A 1 159 ILE 159 139 159 ILE ILE A . n A 1 160 PRO 160 140 160 PRO PRO A . n A 1 161 MET 161 141 161 MET MET A . n A 1 162 ILE 162 142 162 ILE ILE A . n A 1 163 GLY 163 143 163 GLY GLY A . n A 1 164 MET 164 144 164 MET MET A . n A 1 165 VAL 165 145 165 VAL VAL A . n A 1 166 GLN 166 146 166 GLN GLN A . n A 1 167 SER 167 147 167 SER SER A . n A 1 168 LEU 168 148 168 LEU LEU A . n A 1 169 ASN 169 149 169 ASN ASN A . n A 1 170 VAL 170 150 170 VAL VAL A . n A 1 171 SER 171 151 171 SER SER A . n A 1 172 VAL 172 152 172 VAL VAL A . n A 1 173 ALA 173 153 173 ALA ALA A . n A 1 174 SER 174 154 174 SER SER A . n A 1 175 ALA 175 155 175 ALA ALA A . n A 1 176 LEU 176 156 176 LEU LEU A . n A 1 177 ILE 177 157 177 ILE ILE A . n A 1 178 LEU 178 158 178 LEU LEU A . n A 1 179 TYR 179 159 179 TYR TYR A . n A 1 180 GLU 180 160 180 GLU GLU A . n A 1 181 ALA 181 161 181 ALA ALA A . n A 1 182 GLN 182 162 182 GLN GLN A . n A 1 183 ARG 183 163 183 ARG ARG A . n A 1 184 GLN 184 164 184 GLN GLN A . n A 1 185 ARG 185 165 185 ARG ARG A . n A 1 186 GLN 186 166 186 GLN GLN A . n A 1 187 ASN 187 167 187 ASN ASN A . n A 1 188 ALA 188 168 188 ALA ALA A . n A 1 189 GLY 189 169 189 GLY GLY A . n A 1 190 MET 190 170 190 MET MET A . n A 1 191 TYR 191 171 191 TYR TYR A . n A 1 192 LEU 192 172 192 LEU LEU A . n A 1 193 ARG 193 173 193 ARG ARG A . n A 1 194 GLU 194 174 194 GLU GLU A . n A 1 195 ASN 195 175 195 ASN ASN A . n A 1 196 SER 196 176 196 SER SER A . n A 1 197 MET 197 177 197 MET MET A . n A 1 198 LEU 198 178 198 LEU LEU A . n A 1 199 PRO 199 179 199 PRO PRO A . n A 1 200 GLU 200 180 200 GLU GLU A . n A 1 201 ALA 201 181 201 ALA ALA A . n A 1 202 GLU 202 182 202 GLU GLU A . n A 1 203 GLN 203 183 203 GLN GLN A . n A 1 204 GLN 204 184 204 GLN GLN A . n A 1 205 ARG 205 185 205 ARG ARG A . n A 1 206 LEU 206 186 206 LEU LEU A . n A 1 207 LEU 207 187 207 LEU LEU A . n A 1 208 PHE 208 188 208 PHE PHE A . n A 1 209 GLU 209 189 209 GLU GLU A . n A 1 210 GLY 210 190 210 GLY GLY A . n A 1 211 GLY 211 191 211 GLY GLY A . n A 1 212 TYR 212 192 212 TYR TYR A . n A 1 213 PRO 213 193 213 PRO PRO A . n A 1 214 VAL 214 194 214 VAL VAL A . n A 1 215 LEU 215 195 215 LEU LEU A . n A 1 216 ALA 216 196 216 ALA ALA A . n A 1 217 LYS 217 197 217 LYS LYS A . n A 1 218 VAL 218 198 218 VAL VAL A . n A 1 219 ALA 219 199 219 ALA ALA A . n A 1 220 LYS 220 200 220 LYS LYS A . n A 1 221 ARG 221 201 221 ARG ARG A . n A 1 222 LYS 222 202 222 LYS LYS A . n A 1 223 GLY 223 203 223 GLY GLY A . n A 1 224 LEU 224 204 224 LEU LEU A . n A 1 225 PRO 225 205 225 PRO PRO A . n A 1 226 TYR 226 206 226 TYR TYR A . n A 1 227 PRO 227 207 227 PRO PRO A . n A 1 228 HIS 228 208 228 HIS HIS A . n A 1 229 VAL 229 209 229 VAL VAL A . n A 1 230 ASN 230 210 230 ASN ASN A . n A 1 231 GLN 231 211 231 GLN GLN A . n A 1 232 GLN 232 212 232 GLN GLN A . n A 1 233 GLY 233 213 233 GLY GLY A . n A 1 234 GLU 234 214 234 GLU GLU A . n A 1 235 ILE 235 215 235 ILE ILE A . n A 1 236 GLU 236 216 236 GLU GLU A . n A 1 237 ALA 237 217 237 ALA ALA A . n A 1 238 ASP 238 218 238 ASP ASP A . n A 1 239 ALA 239 219 239 ALA ALA A . n A 1 240 ASP 240 220 240 ASP ASP A . n A 1 241 TRP 241 221 241 TRP TRP A . n A 1 242 TRP 242 222 242 TRP TRP A . n A 1 243 ALA 243 223 243 ALA ALA A . n A 1 244 THR 244 224 244 THR THR A . n A 1 245 MET 245 225 245 MET MET A . n A 1 246 GLN 246 226 246 GLN GLN A . n A 1 247 ALA 247 227 247 ALA ALA A . n A 1 248 ALA 248 228 248 ALA ALA A . n A 1 249 GLY 249 229 249 GLY GLY A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 ahirata@tokushima-u.ac.jp Akira Hirata ? 'principal investigator/group leader' 0000-0001-9941-3793 3 hori.hiroyuki.my@ehime-u.ac.jp Hiroyuki Hori ? 'principal investigator/group leader' 0000-0003-4180-8551 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 300 300 SAM SAM A . C 3 PO4 1 301 301 PO4 PO4 A . D 4 HOH 1 401 27 HOH HOH A . D 4 HOH 2 402 52 HOH HOH A . D 4 HOH 3 403 11 HOH HOH A . D 4 HOH 4 404 22 HOH HOH A . D 4 HOH 5 405 53 HOH HOH A . D 4 HOH 6 406 24 HOH HOH A . D 4 HOH 7 407 15 HOH HOH A . D 4 HOH 8 408 39 HOH HOH A . D 4 HOH 9 409 9 HOH HOH A . D 4 HOH 10 410 51 HOH HOH A . D 4 HOH 11 411 3 HOH HOH A . D 4 HOH 12 412 62 HOH HOH A . D 4 HOH 13 413 26 HOH HOH A . D 4 HOH 14 414 17 HOH HOH A . D 4 HOH 15 415 7 HOH HOH A . D 4 HOH 16 416 33 HOH HOH A . D 4 HOH 17 417 44 HOH HOH A . D 4 HOH 18 418 32 HOH HOH A . D 4 HOH 19 419 40 HOH HOH A . D 4 HOH 20 420 30 HOH HOH A . D 4 HOH 21 421 29 HOH HOH A . D 4 HOH 22 422 12 HOH HOH A . D 4 HOH 23 423 61 HOH HOH A . D 4 HOH 24 424 66 HOH HOH A . D 4 HOH 25 425 8 HOH HOH A . D 4 HOH 26 426 25 HOH HOH A . D 4 HOH 27 427 59 HOH HOH A . D 4 HOH 28 428 23 HOH HOH A . D 4 HOH 29 429 46 HOH HOH A . D 4 HOH 30 430 34 HOH HOH A . D 4 HOH 31 431 41 HOH HOH A . D 4 HOH 32 432 47 HOH HOH A . D 4 HOH 33 433 31 HOH HOH A . D 4 HOH 34 434 36 HOH HOH A . D 4 HOH 35 435 43 HOH HOH A . D 4 HOH 36 436 1 HOH HOH A . D 4 HOH 37 437 54 HOH HOH A . D 4 HOH 38 438 28 HOH HOH A . D 4 HOH 39 439 21 HOH HOH A . D 4 HOH 40 440 35 HOH HOH A . D 4 HOH 41 441 38 HOH HOH A . D 4 HOH 42 442 2 HOH HOH A . D 4 HOH 43 443 16 HOH HOH A . D 4 HOH 44 444 6 HOH HOH A . D 4 HOH 45 445 57 HOH HOH A . D 4 HOH 46 446 13 HOH HOH A . D 4 HOH 47 447 45 HOH HOH A . D 4 HOH 48 448 42 HOH HOH A . D 4 HOH 49 449 58 HOH HOH A . D 4 HOH 50 450 37 HOH HOH A . D 4 HOH 51 451 50 HOH HOH A . D 4 HOH 52 452 55 HOH HOH A . D 4 HOH 53 453 49 HOH HOH A . D 4 HOH 54 454 64 HOH HOH A . D 4 HOH 55 455 4 HOH HOH A . D 4 HOH 56 456 14 HOH HOH A . D 4 HOH 57 457 63 HOH HOH A . D 4 HOH 58 458 5 HOH HOH A . D 4 HOH 59 459 10 HOH HOH A . D 4 HOH 60 460 20 HOH HOH A . D 4 HOH 61 461 18 HOH HOH A . D 4 HOH 62 462 65 HOH HOH A . D 4 HOH 63 463 56 HOH HOH A . D 4 HOH 64 464 48 HOH HOH A . D 4 HOH 65 465 60 HOH HOH A . D 4 HOH 66 466 19 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3020 ? 1 MORE -14 ? 1 'SSA (A^2)' 21140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-03-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _pdbx_entry_details.entry_id 7EDC _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 124.66 120.30 4.36 0.50 N 2 1 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH2 A ARG 16 ? ? 116.77 120.30 -3.53 0.50 N 3 1 NE A ARG 163 ? ? CZ A ARG 163 ? ? NH2 A ARG 163 ? ? 116.90 120.30 -3.40 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 97 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -171.57 _pdbx_validate_torsion.psi 127.06 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLN A 120 ? ? GLU A 121 ? ? 145.83 2 1 ALA A 228 ? ? GLY A 229 ? ? -55.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 18K06088 1 'Japan Society for the Promotion of Science (JSPS)' Japan 20H03211 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 PO4 ? ? PO4 ? ? 'SUBJECT OF INVESTIGATION' ? 2 SAM ? ? SAM ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'PHOSPHATE ION' PO4 4 water HOH #