HEADER TRANSFERASE 19-MAR-21 7EEW TITLE CRYSTAL STRUCTURE OF THE INTACT MTASE FROM VIBRIO VULNIFICUS YJ016 IN TITLE 2 COMPLEX WITH THE DNA-MIMICKING OCR PROTEIN AND THE S-ADENOSYL-L- TITLE 3 HOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLTRANSFERASE COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: OVERCOME CLASSICAL RESTRICTION GP0.3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: GENE PRODUCT 0.3,GP0.3,OCR; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS (STRAIN YJ016); SOURCE 3 ORGANISM_TAXID: 196600; SOURCE 4 STRAIN: YJ016; SOURCE 5 GENE: VV2202; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE T7; SOURCE 10 ORGANISM_TAXID: 10760; SOURCE 11 GENE: 0.3; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS TYPE I RESTRICTION-MODIFICATION SYSTEM, METHYLTRANSFERASE, OCR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.SEO,S.Y.PARK,J.S.KIM REVDAT 3 29-MAY-24 7EEW 1 REMARK REVDAT 2 13-JUL-22 7EEW 1 JRNL REVDAT 1 23-MAR-22 7EEW 0 JRNL AUTH P.W.SEO,A.HOFMANN,J.H.KIM,S.A.HWANGBO,J.H.KIM,J.W.KIM, JRNL AUTH 2 T.Y.L.HUYNH,H.E.CHOY,S.J.KIM,J.LEE,J.O.LEE,K.S.JIN,S.Y.PARK, JRNL AUTH 3 J.S.KIM JRNL TITL STRUCTURAL FEATURES OF A MINIMAL INTACT METHYLTRANSFERASE OF JRNL TITL 2 A TYPE I RESTRICTION-MODIFICATION SYSTEM. JRNL REF INT.J.BIOL.MACROMOL. V. 208 381 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 35337914 JRNL DOI 10.1016/J.IJBIOMAC.2022.03.115 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 26432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9557 - 5.9109 0.98 3115 165 0.2099 0.2231 REMARK 3 2 5.9109 - 4.7407 0.98 2952 158 0.2703 0.2940 REMARK 3 3 4.7407 - 4.1562 0.97 2906 148 0.2424 0.2689 REMARK 3 4 4.1562 - 3.7829 0.96 2845 148 0.2730 0.3003 REMARK 3 5 3.7829 - 3.5155 0.95 2800 147 0.2823 0.3252 REMARK 3 6 3.5155 - 3.3106 0.95 2779 149 0.3056 0.3203 REMARK 3 7 3.3106 - 3.1465 0.92 2703 139 0.3264 0.3516 REMARK 3 8 3.1465 - 3.0106 0.90 2621 132 0.3699 0.4075 REMARK 3 9 3.0106 - 2.8960 0.83 2399 126 0.4044 0.4044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5870 REMARK 3 ANGLE : 0.505 7934 REMARK 3 CHIRALITY : 0.038 903 REMARK 3 PLANARITY : 0.004 1013 REMARK 3 DIHEDRAL : 16.661 3532 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.896 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.18800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL 6000, REMARK 280 0.1 M SODIUM CHLORIDE, 0.1 M HEPES PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.87200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.93600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.40400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.46800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 197.34000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.87200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.93600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.46800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.40400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 197.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 70310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -133.28000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 118.40400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 817 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 853 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 63 REMARK 465 PHE A 64 REMARK 465 SER A 65 REMARK 465 LYS A 66 REMARK 465 ASP A 67 REMARK 465 GLY A 68 REMARK 465 LEU A 69 REMARK 465 GLU A 91 REMARK 465 ASN A 92 REMARK 465 GLU A 93 REMARK 465 LEU A 94 REMARK 465 SER A 95 REMARK 465 HIS A 96 REMARK 465 SER A 97 REMARK 465 VAL A 98 REMARK 465 LYS A 204 REMARK 465 SER A 205 REMARK 465 CYS A 206 REMARK 465 PHE A 207 REMARK 465 ASN A 208 REMARK 465 THR A 423 REMARK 465 GLU A 424 REMARK 465 ALA A 425 REMARK 465 GLY A 426 REMARK 465 LEU A 427 REMARK 465 LYS A 428 REMARK 465 MET B 1 REMARK 465 TYR B 112 REMARK 465 GLU B 113 REMARK 465 GLU B 114 REMARK 465 ASP B 115 REMARK 465 GLU B 116 REMARK 465 GLU B 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 155 O HOH A 801 2.15 REMARK 500 OD2 ASP A 216 O3' SAH A 700 2.18 REMARK 500 O LEU A 175 NH2 ARG A 299 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 273 OD2 ASP A 489 6554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -85.87 -131.85 REMARK 500 ILE A 18 -40.96 -150.27 REMARK 500 ASN A 19 69.84 -116.27 REMARK 500 ILE A 45 -17.39 -146.09 REMARK 500 LYS A 47 -111.27 51.99 REMARK 500 ASN A 49 -32.91 80.29 REMARK 500 SER A 100 -53.14 64.25 REMARK 500 ASN A 103 44.16 -83.59 REMARK 500 ASN A 176 70.88 52.94 REMARK 500 ARG A 248 -98.02 53.00 REMARK 500 PRO A 261 -157.37 -88.71 REMARK 500 VAL A 265 53.58 -140.69 REMARK 500 GLU A 272 68.00 -104.07 REMARK 500 ALA A 313 90.03 -67.54 REMARK 500 GLN A 326 -70.55 -90.43 REMARK 500 ALA A 341 -178.28 64.41 REMARK 500 ASN A 355 -135.23 59.15 REMARK 500 THR A 356 -134.06 56.39 REMARK 500 LEU A 373 -155.57 -113.90 REMARK 500 SER A 374 -68.22 82.67 REMARK 500 ASN A 377 74.84 35.57 REMARK 500 SER A 378 -163.23 -79.27 REMARK 500 GLU A 398 -74.60 64.50 REMARK 500 ASP A 472 67.44 -119.59 REMARK 500 ILE A 473 -30.86 -161.85 REMARK 500 ASN A 483 33.19 -88.81 REMARK 500 SER A 514 -148.04 -123.30 REMARK 500 LYS A 519 -55.71 -122.74 REMARK 500 HIS A 523 32.15 -96.35 REMARK 500 GLU A 564 75.72 54.14 REMARK 500 THR A 572 -71.69 -107.30 REMARK 500 PRO A 590 -150.48 -93.76 REMARK 500 MET B 3 -64.22 62.15 REMARK 500 ASP B 27 -64.95 58.61 REMARK 500 ILE B 28 66.96 34.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDKY9 RELATED DB: SASBDB DBREF 7EEW A 1 638 UNP Q7MJG0 Q7MJG0_VIBVY 1 638 DBREF 7EEW B 1 117 UNP P03775 OCR_BPT7 1 117 SEQRES 1 A 638 MET ASN ASN LYS LEU MET ASN ILE ILE GLU LEU ILE ARG SEQRES 2 A 638 LYS ASP THR GLY ILE ASN ASN ALA ILE ASP ALA VAL GLU SEQRES 3 A 638 GLN LEU ALA LEU LEU LEU LEU VAL ARG TYR THR HIS GLU SEQRES 4 A 638 VAL ALA SER ASN GLU ILE SER LYS GLU ASN HIS ILE ASP SEQRES 5 A 638 SER PHE LYS ASN LEU PHE PHE ASP LEU ASN ASP PHE SER SEQRES 6 A 638 LYS ASP GLY LEU VAL ILE ASP PHE TYR THR LEU ARG ASP SEQRES 7 A 638 LYS LEU ASN HIS ILE VAL VAL ASN CYS ARG PHE SER GLU SEQRES 8 A 638 ASN GLU LEU SER HIS SER VAL PHE SER ARG ASN ASN TRP SEQRES 9 A 638 GLU LYS ILE GLU ASN ILE LEU ASP GLN ILE PRO PHE ARG SEQRES 10 A 638 ILE ARG SER THR LYS ILE LEU ASP LEU VAL ILE HIS ARG SEQRES 11 A 638 LEU GLU GLU LEU ASP LEU SER GLU GLY ILE GLU ILE ASP SEQRES 12 A 638 PHE ASP HIS LEU LEU LEU ASN MET VAL LYS ASP SER GLY SEQRES 13 A 638 SER SER GLY ALA TYR TYR SER PRO ARG PRO LEU ILE LYS SEQRES 14 A 638 ALA MET VAL ARG VAL LEU ASN PRO LYS PRO LEU ALA THR SEQRES 15 A 638 VAL TYR ASP PRO ALA MET GLY THR GLY GLY VAL PHE VAL SEQRES 16 A 638 GLU ALA LYS LYS HIS ALA LYS GLY LYS SER CYS PHE ASN SEQRES 17 A 638 GLY LEU SER PHE ILE GLY ASN ASP LEU SER PRO PHE ALA SEQRES 18 A 638 HIS LEU ILE GLY ALA LEU ASN LEU LEU LEU ASN ASP ILE SEQRES 19 A 638 ASP ILE SER GLY VAL SER ILE SER ASP SER LEU LEU ASP SEQRES 20 A 638 ARG ASP CYS GLN GLN TYR ASP PHE VAL ILE SER GLY VAL SEQRES 21 A 638 PRO PHE GLY LYS VAL ASN GLU LEU THR LYS TYR GLU TYR SEQRES 22 A 638 TYR TYR HIS GLY TYR SER GLY SER LEU GLU ALA MET PHE SEQRES 23 A 638 LEU LYS HIS THR MET ASP LYS LEU ALA LYS GLY GLY ARG SEQRES 24 A 638 ALA ALA ILE VAL ILE PRO ASP GLY ILE LEU PHE GLY ASN SEQRES 25 A 638 ALA SER HIS LEU ASP GLU LEU LYS ARG GLN LEU LEU THR SEQRES 26 A 638 GLN PHE ASN LEU HIS ALA VAL LEU SER LEU PRO LYS GLY SEQRES 27 A 638 THR LEU ALA PRO TYR SER GLY VAL LYS VAL SER VAL LEU SEQRES 28 A 638 PHE PHE ASP ASN THR VAL SER GLU LYS ASP ILE TRP PHE SEQRES 29 A 638 TYR GLU LEU ARG THR ASN LYS PRO LEU SER LYS VAL ASN SEQRES 30 A 638 SER ILE THR ASP SER ASP PHE GLU ASP PHE THR SER LEU SEQRES 31 A 638 TYR GLU ARG ARG GLU VAL SER GLU ASN SER CYS LEU ILE SEQRES 32 A 638 SER LYS GLU SER LEU LEU GLN ASP LYS THR LEU ASN LEU SEQRES 33 A 638 SER PHE SER LEU PRO LYS THR GLU ALA GLY LEU LYS PHE SEQRES 34 A 638 ASP LYS GLN GLU MET ILE ALA SER LEU LYS SER GLU GLN SEQRES 35 A 638 LEU SER LEU VAL THR SER ILE GLU ASN HIS PHE ASP TYR SEQRES 36 A 638 MET SER LEU ASN LEU GLU CYS LYS TYR ILE HIS GLN VAL SEQRES 37 A 638 LYS LEU LYS ASP ILE CYS LYS LEU ARG SER GLY ASP LYS SEQRES 38 A 638 LEU ASN LYS SER GLU VAL MET ASP SER GLY GLU PHE PRO SEQRES 39 A 638 VAL TYR GLY GLY ASN GLY VAL ILE GLY PHE ASN VAL GLU SEQRES 40 A 638 PRO ASN ARG HIS GLY ASP SER ILE VAL ILE GLY LYS VAL SEQRES 41 A 638 GLY ALA HIS CYS GLY ASN ILE HIS PHE SER THR GLN PRO SEQRES 42 A 638 TYR TRP LEU THR SER ASN ALA MET SER LEU GLU LEU LEU SEQRES 43 A 638 ASP THR THR LYS VAL TYR LEU PRO TYR LEU ALA HIS VAL SEQRES 44 A 638 LEU LYS SER LEU GLU LEU ASN ASN LEU ALA THR GLY THR SEQRES 45 A 638 ALA GLN LYS PHE ILE SER ILE ASN LYS LEU TYR GLU VAL SEQRES 46 A 638 GLU VAL SER LEU PRO SER LEU GLU LYS GLN ARG GLU MET SEQRES 47 A 638 SER GLU TRP PHE THR SER ILE GLU GLU SER LYS SER LYS SEQRES 48 A 638 ILE GLN SER LEU LEU ALA ASP PHE SER ARG ASN LEU GLY SEQRES 49 A 638 THR ILE SER THR GLU SER ILE THR GLU LYS ALA LEU LYS SEQRES 50 A 638 GLY SEQRES 1 B 117 MET ALA MET SER ASN MET THR TYR ASN ASN VAL PHE ASP SEQRES 2 B 117 HIS ALA TYR GLU MET LEU LYS GLU ASN ILE ARG TYR ASP SEQRES 3 B 117 ASP ILE ARG ASP THR ASP ASP LEU HIS ASP ALA ILE HIS SEQRES 4 B 117 MET ALA ALA ASP ASN ALA VAL PRO HIS TYR TYR ALA ASP SEQRES 5 B 117 ILE PHE SER VAL MET ALA SER GLU GLY ILE ASP LEU GLU SEQRES 6 B 117 PHE GLU ASP SER GLY LEU MET PRO ASP THR LYS ASP VAL SEQRES 7 B 117 ILE ARG ILE LEU GLN ALA ARG ILE TYR GLU GLN LEU THR SEQRES 8 B 117 ILE ASP LEU TRP GLU ASP ALA GLU ASP LEU LEU ASN GLU SEQRES 9 B 117 TYR LEU GLU GLU VAL GLU GLU TYR GLU GLU ASP GLU GLU HET SAH A 700 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 HOH *60(H2 O) HELIX 1 AA1 ASN A 3 ILE A 12 1 10 HELIX 2 AA2 ILE A 22 ILE A 45 1 24 HELIX 3 AA3 ASP A 72 ARG A 88 1 17 HELIX 4 AA4 ASN A 103 ILE A 114 1 12 HELIX 5 AA5 SER A 120 LEU A 134 1 15 HELIX 6 AA6 ILE A 140 GLY A 156 1 17 HELIX 7 AA7 SER A 157 TYR A 161 5 5 HELIX 8 AA8 PRO A 164 ASN A 176 1 13 HELIX 9 AA9 GLY A 191 ALA A 201 1 11 HELIX 10 AB1 SER A 218 ASN A 232 1 15 HELIX 11 AB2 SER A 281 LYS A 293 1 13 HELIX 12 AB3 GLY A 307 LEU A 309 5 3 HELIX 13 AB4 ALA A 313 GLN A 326 1 14 HELIX 14 AB5 PHE A 384 LEU A 390 1 7 HELIX 15 AB6 SER A 404 ASP A 411 1 8 HELIX 16 AB7 GLN A 432 MET A 456 1 25 HELIX 17 AB8 TYR A 552 LEU A 563 1 12 HELIX 18 AB9 GLU A 564 LEU A 568 5 5 HELIX 19 AC1 SER A 578 GLU A 584 1 7 HELIX 20 AC2 SER A 591 LEU A 636 1 46 HELIX 21 AC3 THR B 7 ASP B 26 1 20 HELIX 22 AC4 ASP B 32 VAL B 46 1 15 HELIX 23 AC5 TYR B 49 SER B 59 1 11 HELIX 24 AC6 ASP B 68 MET B 72 5 5 HELIX 25 AC7 ASP B 77 LEU B 106 1 30 SHEET 1 AA1 7 VAL A 183 TYR A 184 0 SHEET 2 AA1 7 PHE A 255 GLY A 259 1 O PHE A 255 N TYR A 184 SHEET 3 AA1 7 ALA A 300 PRO A 305 1 O VAL A 303 N SER A 258 SHEET 4 AA1 7 VAL A 348 PHE A 353 -1 O SER A 349 N ILE A 304 SHEET 5 AA1 7 LEU A 329 LEU A 335 -1 N HIS A 330 O PHE A 352 SHEET 6 AA1 7 ILE A 362 GLU A 366 1 O TRP A 363 N HIS A 330 SHEET 7 AA1 7 SER A 400 ILE A 403 -1 O ILE A 403 N ILE A 362 SHEET 1 AA2 2 HIS A 466 LYS A 469 0 SHEET 2 AA2 2 GLU A 586 LEU A 589 -1 O VAL A 587 N VAL A 468 SHEET 1 AA3 4 CYS A 474 SER A 478 0 SHEET 2 AA3 4 ALA A 540 LEU A 545 -1 O GLU A 544 N LYS A 475 SHEET 3 AA3 4 ILE A 515 GLY A 518 -1 N ILE A 515 O LEU A 543 SHEET 4 AA3 4 ILE A 527 PHE A 529 -1 O HIS A 528 N VAL A 516 SHEET 1 AA4 2 VAL A 495 TYR A 496 0 SHEET 2 AA4 2 TRP A 535 LEU A 536 1 O TRP A 535 N TYR A 496 CISPEP 1 LYS A 337 GLY A 338 0 -1.41 CRYST1 133.280 133.280 236.808 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007503 0.004332 0.000000 0.00000 SCALE2 0.000000 0.008664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004223 0.00000