HEADER DNA BINDING PROTEIN 21-MAR-21 7EFA TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE C-TERMINAL DOMAIN OF TITLE 2 MOUSE MUTYH AND HUMAN PCNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ADENINE DNA GLYCOSYLASE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MUTY HOMOLOG,MMYH; COMPND 10 EC: 3.2.2.31; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: MUTYH, MYH; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPLICATION, DNA REPAIR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKAMURA,Y.NAKABEPPU,Y.YAMAGATA REVDAT 4 29-NOV-23 7EFA 1 REMARK REVDAT 3 21-JUL-21 7EFA 1 JRNL REVDAT 2 07-JUL-21 7EFA 1 JRNL REVDAT 1 23-JUN-21 7EFA 0 JRNL AUTH T.NAKAMURA,K.OKABE,S.HIRAYAMA,M.CHIRIFU,S.IKEMIZU,H.MORIOKA, JRNL AUTH 2 Y.NAKABEPPU,Y.YAMAGATA JRNL TITL STRUCTURE OF THE MAMMALIAN ADENINE DNA GLYCOSYLASE MUTYH: JRNL TITL 2 INSIGHTS INTO THE BASE EXCISION REPAIR PATHWAY AND CANCER. JRNL REF NUCLEIC ACIDS RES. V. 49 7154 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34142156 JRNL DOI 10.1093/NAR/GKAB492 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4000 - 4.6200 1.00 2843 169 0.2168 0.2743 REMARK 3 2 4.6200 - 3.6600 1.00 2868 134 0.2254 0.2674 REMARK 3 3 3.6600 - 3.2000 1.00 2806 183 0.2722 0.3055 REMARK 3 4 3.2000 - 2.9100 1.00 2860 109 0.2924 0.3951 REMARK 3 5 2.9100 - 2.7000 1.00 2812 154 0.2827 0.3374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.327 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.847 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2897 REMARK 3 ANGLE : 0.498 3944 REMARK 3 CHIRALITY : 0.043 466 REMARK 3 PLANARITY : 0.003 519 REMARK 3 DIHEDRAL : 8.480 1759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 256) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8650 -31.8831 -12.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.4430 T22: 0.4205 REMARK 3 T33: 0.6755 T12: -0.1221 REMARK 3 T13: 0.0153 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 6.1728 L22: 4.9732 REMARK 3 L33: 2.4814 L12: -2.8723 REMARK 3 L13: 1.4503 L23: -0.6147 REMARK 3 S TENSOR REMARK 3 S11: -0.2124 S12: -0.0680 S13: 1.3037 REMARK 3 S21: 0.2277 S22: 0.0272 S23: -0.9980 REMARK 3 S31: -0.4099 S32: 0.3190 S33: 0.1049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 336 THROUGH 469) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4091 -27.0268 -49.0895 REMARK 3 T TENSOR REMARK 3 T11: 1.0750 T22: 1.8860 REMARK 3 T33: 0.3978 T12: -0.1673 REMARK 3 T13: 0.2575 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.3614 L22: 4.0131 REMARK 3 L33: 1.3261 L12: -0.7636 REMARK 3 L13: 0.7966 L23: 1.3081 REMARK 3 S TENSOR REMARK 3 S11: 0.2650 S12: -1.1393 S13: -0.0205 REMARK 3 S21: 0.5624 S22: -0.4949 S23: 0.9592 REMARK 3 S31: -0.9082 S32: -0.4933 S33: -0.2429 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 490 THROUGH 503) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0146 -17.9844 -27.3693 REMARK 3 T TENSOR REMARK 3 T11: 1.5711 T22: 1.3124 REMARK 3 T33: 1.4867 T12: -0.1076 REMARK 3 T13: 0.5592 T23: 0.5827 REMARK 3 L TENSOR REMARK 3 L11: 9.4878 L22: 6.4772 REMARK 3 L33: 7.9226 L12: 4.0119 REMARK 3 L13: -1.8925 L23: 3.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.4643 S12: 1.1315 S13: 1.5168 REMARK 3 S21: -1.1349 S22: -0.3728 S23: -1.6745 REMARK 3 S31: -2.5877 S32: 1.2214 S33: 0.1279 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 36.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, IMIDAZOLE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.19000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.19000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -43.89000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -76.01971 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 43.89000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -76.01971 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLY B 327 REMARK 465 PRO B 328 REMARK 465 LEU B 329 REMARK 465 GLY B 330 REMARK 465 SER B 331 REMARK 465 ARG B 332 REMARK 465 ARG B 333 REMARK 465 PRO B 334 REMARK 465 PRO B 335 REMARK 465 PHE B 415 REMARK 465 SER B 416 REMARK 465 HIS B 417 REMARK 465 GLN B 470 REMARK 465 GLY B 471 REMARK 465 THR B 472 REMARK 465 ARG B 473 REMARK 465 LYS B 474 REMARK 465 GLY B 475 REMARK 465 SER B 476 REMARK 465 LYS B 477 REMARK 465 ARG B 478 REMARK 465 SER B 479 REMARK 465 GLN B 480 REMARK 465 VAL B 481 REMARK 465 CYS B 482 REMARK 465 PRO B 483 REMARK 465 PRO B 484 REMARK 465 SER B 485 REMARK 465 SER B 486 REMARK 465 ARG B 487 REMARK 465 LYS B 488 REMARK 465 LYS B 489 REMARK 465 HIS B 504 REMARK 465 ILE B 505 REMARK 465 PRO B 506 REMARK 465 THR B 507 REMARK 465 ASP B 508 REMARK 465 LYS B 509 REMARK 465 PRO B 510 REMARK 465 ASN B 511 REMARK 465 SER B 512 REMARK 465 THR B 513 REMARK 465 THR B 514 REMARK 465 GLN B 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 ARG B 336 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 TYR B 339 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 340 OG REMARK 470 THR B 342 OG1 CG2 REMARK 470 VAL B 344 CG1 CG2 REMARK 470 VAL B 345 CG1 CG2 REMARK 470 GLN B 347 CG CD OE1 NE2 REMARK 470 ILE B 351 CG1 CG2 CD1 REMARK 470 LEU B 355 CG CD1 CD2 REMARK 470 VAL B 356 CG1 CG2 REMARK 470 LEU B 357 CG CD1 CD2 REMARK 470 LEU B 358 CG CD1 CD2 REMARK 470 VAL B 359 CG1 CG2 REMARK 470 GLN B 360 CG CD OE1 NE2 REMARK 470 ARG B 361 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 363 CG OD1 OD2 REMARK 470 SER B 364 OG REMARK 470 LEU B 366 CG CD1 CD2 REMARK 470 LEU B 367 CG CD1 CD2 REMARK 470 LEU B 370 CG CD1 CD2 REMARK 470 PHE B 373 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 375 OG REMARK 470 VAL B 376 CG1 CG2 REMARK 470 THR B 377 OG1 CG2 REMARK 470 LEU B 378 CG CD1 CD2 REMARK 470 GLU B 379 CG CD OE1 OE2 REMARK 470 SER B 381 OG REMARK 470 GLN B 391 CG CD OE1 NE2 REMARK 470 ARG B 395 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 400 CG CD1 CD2 REMARK 470 ILE B 403 CG1 CG2 CD1 REMARK 470 ARG B 404 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 406 CG CD OE1 NE2 REMARK 470 GLU B 410 CG CD OE1 OE2 REMARK 470 VAL B 411 CG1 CG2 REMARK 470 ILE B 412 CG1 CG2 CD1 REMARK 470 HIS B 413 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 414 CG1 CG2 CD1 REMARK 470 ILE B 418 CG1 CG2 CD1 REMARK 470 LYS B 419 CG CD CE NZ REMARK 470 LEU B 420 CG CD1 CD2 REMARK 470 TYR B 422 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 424 CG1 CG2 REMARK 470 SER B 426 OG REMARK 470 LEU B 429 CG CD1 CD2 REMARK 470 ASP B 430 CG OD1 OD2 REMARK 470 GLN B 431 CG CD OE1 NE2 REMARK 470 SER B 435 OG REMARK 470 THR B 436 OG1 CG2 REMARK 470 ARG B 442 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 444 CG CD1 CD2 REMARK 470 THR B 445 OG1 CG2 REMARK 470 TRP B 446 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 446 CZ3 CH2 REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 470 GLU B 448 CG CD OE1 OE2 REMARK 470 PHE B 449 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS B 450 SG REMARK 470 ASN B 451 CG OD1 ND2 REMARK 470 VAL B 454 CG1 CG2 REMARK 470 SER B 455 OG REMARK 470 THR B 456 OG1 CG2 REMARK 470 MET B 458 CG SD CE REMARK 470 LYS B 459 CG CD CE NZ REMARK 470 LYS B 460 CG CD CE NZ REMARK 470 VAL B 461 CG1 CG2 REMARK 470 PHE B 462 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 463 CG CD NE CZ NH1 NH2 REMARK 470 MET B 464 CG SD CE REMARK 470 TYR B 465 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 466 CG CD OE1 OE2 REMARK 470 ASP B 467 CG OD1 OD2 REMARK 470 HIS B 468 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 469 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 503 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 44 17.85 59.62 REMARK 500 ASN A 95 59.18 -100.52 REMARK 500 LEU A 118 151.69 69.74 REMARK 500 GLU A 130 97.92 -64.54 REMARK 500 ASP A 189 -117.10 59.08 REMARK 500 LYS A 190 -130.28 59.83 REMARK 500 GLU A 192 23.58 -79.96 REMARK 500 ASN A 200 -68.89 -109.75 REMARK 500 ASP A 243 34.43 37.91 REMARK 500 ALA B 350 -119.71 -120.75 REMARK 500 HIS B 384 32.25 -145.90 REMARK 500 CYS B 397 -14.70 -156.87 REMARK 500 ALA B 402 82.98 -66.10 REMARK 500 ILE B 403 25.13 -147.76 REMARK 500 ARG B 404 7.64 -157.58 REMARK 500 GLN B 431 -157.97 -138.58 REMARK 500 SER B 435 -71.13 -118.26 REMARK 500 ASN B 451 27.23 -151.08 REMARK 500 ALA B 452 -126.93 -105.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EFA A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 7EFA B 331 515 UNP Q99P21 MUTYH_MOUSE 331 515 SEQADV 7EFA GLY B 327 UNP Q99P21 EXPRESSION TAG SEQADV 7EFA PRO B 328 UNP Q99P21 EXPRESSION TAG SEQADV 7EFA LEU B 329 UNP Q99P21 EXPRESSION TAG SEQADV 7EFA GLY B 330 UNP Q99P21 EXPRESSION TAG SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 A 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 A 261 SER SEQRES 1 B 189 GLY PRO LEU GLY SER ARG ARG PRO PRO ARG GLU GLU TYR SEQRES 2 B 189 SER ALA THR CYS VAL VAL GLU GLN PRO GLY ALA ILE GLY SEQRES 3 B 189 GLY PRO LEU VAL LEU LEU VAL GLN ARG PRO ASP SER GLY SEQRES 4 B 189 LEU LEU ALA GLY LEU TRP GLU PHE PRO SER VAL THR LEU SEQRES 5 B 189 GLU PRO SER GLU GLN HIS GLN HIS LYS ALA LEU LEU GLN SEQRES 6 B 189 GLU LEU GLN ARG TRP CYS GLY PRO LEU PRO ALA ILE ARG SEQRES 7 B 189 LEU GLN HIS LEU GLY GLU VAL ILE HIS ILE PHE SER HIS SEQRES 8 B 189 ILE LYS LEU THR TYR GLN VAL TYR SER LEU ALA LEU ASP SEQRES 9 B 189 GLN ALA PRO ALA SER THR ALA PRO PRO GLY ALA ARG TRP SEQRES 10 B 189 LEU THR TRP GLU GLU PHE CYS ASN ALA ALA VAL SER THR SEQRES 11 B 189 ALA MET LYS LYS VAL PHE ARG MET TYR GLU ASP HIS ARG SEQRES 12 B 189 GLN GLY THR ARG LYS GLY SER LYS ARG SER GLN VAL CYS SEQRES 13 B 189 PRO PRO SER SER ARG LYS LYS PRO SER LEU GLY GLN GLN SEQRES 14 B 189 VAL LEU ASP THR PHE PHE GLN ARG HIS ILE PRO THR ASP SEQRES 15 B 189 LYS PRO ASN SER THR THR GLN FORMUL 3 HOH *(H2 O) HELIX 1 AA1 GLY A 9 ASP A 21 1 13 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 CYS A 81 1 10 HELIX 4 AA4 SER A 141 SER A 152 1 12 HELIX 5 AA5 LEU A 209 THR A 216 1 8 HELIX 6 AA6 LYS A 217 SER A 222 5 6 HELIX 7 AA7 GLU B 379 GLN B 383 5 5 HELIX 8 AA8 HIS B 386 GLY B 398 1 13 HELIX 9 AA9 THR B 445 CYS B 450 1 6 HELIX 10 AB1 SER B 455 HIS B 468 1 14 HELIX 11 AB2 VAL B 496 PHE B 500 5 5 SHEET 1 AA1 5 THR A 59 CYS A 62 0 SHEET 2 AA1 5 PHE A 2 LEU A 6 -1 N ARG A 5 O THR A 59 SHEET 3 AA1 5 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 AA1 5 LEU A 99 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 5 VAL A 111 MET A 116 -1 O TYR A 114 N LEU A 101 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 ILE A 30 -1 N TRP A 28 O MET A 68 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 ARG A 53 -1 O LEU A 50 N LEU A 37 SHEET 5 AA2 9 GLY A 245 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 AA2 9 LEU A 235 ILE A 241 -1 N VAL A 237 O TYR A 249 SHEET 7 AA2 9 THR A 224 MET A 229 -1 N THR A 226 O GLU A 238 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N VAL A 137 O LEU A 227 SHEET 9 AA2 9 THR A 196 MET A 199 -1 O GLU A 198 N VAL A 136 SHEET 1 AA3 4 ASN A 177 SER A 183 0 SHEET 2 AA3 4 GLY A 166 SER A 172 -1 N PHE A 169 O ILE A 180 SHEET 3 AA3 4 ALA A 157 CYS A 162 -1 N SER A 161 O LYS A 168 SHEET 4 AA3 4 GLN A 204 ALA A 208 -1 O LEU A 205 N ILE A 160 SHEET 1 AA4 3 LEU B 355 VAL B 356 0 SHEET 2 AA4 3 GLU B 337 GLN B 347 -1 N GLN B 347 O LEU B 355 SHEET 3 AA4 3 SER B 375 LEU B 378 -1 O LEU B 378 N TYR B 339 SHEET 1 AA5 4 LEU B 355 VAL B 356 0 SHEET 2 AA5 4 GLU B 337 GLN B 347 -1 N GLN B 347 O LEU B 355 SHEET 3 AA5 4 LYS B 419 ALA B 428 1 O LYS B 419 N GLU B 338 SHEET 4 AA5 4 GLN B 406 HIS B 413 -1 N VAL B 411 O TYR B 422 SHEET 1 AA6 2 VAL B 359 GLN B 360 0 SHEET 2 AA6 2 TRP B 371 GLU B 372 -1 O GLU B 372 N VAL B 359 CISPEP 1 GLY B 353 PRO B 354 0 -0.01 CRYST1 87.780 87.780 124.380 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011392 0.006577 0.000000 0.00000 SCALE2 0.000000 0.013154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008040 0.00000