HEADER SUGAR BINDING PROTEIN 30-MAR-21 7EHO TITLE CHITIN OLIGOSACCHARIDE BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITIN OLIGOSACCHARIDE BINDING PROTEIN NAGB2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS SP. FPU-7; SOURCE 3 ORGANISM_TAXID: 762821; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHITIN OLIGOSACCHARIDE BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ITOH,T.HIBI,H.KIMOTO REVDAT 2 14-JUL-21 7EHO 1 JRNL REVDAT 1 07-JUL-21 7EHO 0 JRNL AUTH T.ITOH,M.YAGUCHI,A.NAKAICHI,M.YODA,T.HIBI,H.KIMOTO JRNL TITL STRUCTURAL CHARACTERIZATION OF TWO SOLUTE-BINDING PROTEINS JRNL TITL 2 FOR N,N' -DIACETYLCHITOBIOSE/ N,N',N'' JRNL TITL 3 -TRIACETYLCHITOTORIOSE OF THE GRAM-POSITIVE BACTERIUM, JRNL TITL 4 PAENIBACILLUS SP. STR. FPU-7. JRNL REF J STRUCT BIOL X V. 5 00049 2021 JRNL REFN ESSN 2590-1524 JRNL PMID 34195603 JRNL DOI 10.1016/J.YJSBX.2021.100049 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 65787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8100 - 5.1700 0.99 2965 121 0.1831 0.2100 REMARK 3 2 5.1700 - 4.1100 0.99 2894 144 0.1480 0.1667 REMARK 3 3 4.1100 - 3.5900 0.99 2864 150 0.1507 0.1567 REMARK 3 4 3.5900 - 3.2600 0.95 2714 164 0.1597 0.1776 REMARK 3 5 3.2600 - 3.0300 0.90 2571 135 0.1715 0.2057 REMARK 3 6 3.0300 - 2.8500 0.88 2510 148 0.1863 0.1996 REMARK 3 7 2.8500 - 2.7100 0.87 2500 118 0.1778 0.2195 REMARK 3 8 2.7100 - 2.5900 0.87 2493 134 0.1832 0.2000 REMARK 3 9 2.5900 - 2.4900 0.87 2491 141 0.1761 0.2310 REMARK 3 10 2.4900 - 2.4000 0.88 2529 126 0.1704 0.2174 REMARK 3 11 2.4000 - 2.3300 0.88 2533 112 0.1738 0.2002 REMARK 3 12 2.3300 - 2.2600 0.89 2571 132 0.1763 0.2324 REMARK 3 13 2.2600 - 2.2000 0.90 2539 135 0.1787 0.2342 REMARK 3 14 2.2000 - 2.1500 0.90 2579 148 0.1830 0.2134 REMARK 3 15 2.1500 - 2.1000 0.90 2529 157 0.1888 0.2107 REMARK 3 16 2.1000 - 2.0500 0.90 2563 141 0.1789 0.2446 REMARK 3 17 2.0500 - 2.0100 0.91 2603 127 0.1934 0.2472 REMARK 3 18 2.0100 - 1.9700 0.91 2608 133 0.1974 0.2155 REMARK 3 19 1.9700 - 1.9400 0.91 2598 136 0.2099 0.2615 REMARK 3 20 1.9400 - 1.9100 0.92 2615 155 0.2199 0.2542 REMARK 3 21 1.9100 - 1.8800 0.91 2590 137 0.2411 0.2410 REMARK 3 22 1.8800 - 1.8500 0.92 2609 139 0.2538 0.2998 REMARK 3 23 1.8500 - 1.8200 0.93 2649 125 0.2682 0.3287 REMARK 3 24 1.8200 - 1.7900 0.83 2376 136 0.2866 0.3373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MES, PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.98900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 ASP A 27 REMARK 465 LYS A 28 REMARK 465 ASN A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 ASN A 34 REMARK 465 GLY A 35 REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 ALA A 38 REMARK 465 LYS A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 THR A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 MET B 20 REMARK 465 GLY B 21 REMARK 465 CYS B 22 REMARK 465 GLY B 23 REMARK 465 GLY B 24 REMARK 465 THR B 25 REMARK 465 ALA B 26 REMARK 465 ASP B 27 REMARK 465 LYS B 28 REMARK 465 ASN B 29 REMARK 465 PRO B 30 REMARK 465 ALA B 31 REMARK 465 GLY B 32 REMARK 465 ASN B 33 REMARK 465 ASN B 34 REMARK 465 GLY B 35 REMARK 465 ASP B 36 REMARK 465 SER B 37 REMARK 465 ALA B 38 REMARK 465 LYS B 39 REMARK 465 PRO B 40 REMARK 465 ALA B 41 REMARK 465 GLU B 42 REMARK 465 THR B 43 REMARK 465 LYS B 44 REMARK 465 SER B 45 REMARK 465 GLY B 46 REMARK 465 ASP B 47 REMARK 465 SER B 48 REMARK 465 LYS B 451 REMARK 465 LEU B 452 REMARK 465 GLU B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 310 O HOH A 601 1.80 REMARK 500 O HOH A 602 O HOH A 790 1.91 REMARK 500 NH1 ARG A 59 O HOH A 602 1.99 REMARK 500 NZ LYS B 401 O HOH B 501 2.01 REMARK 500 OD2 ASP A 47 O HOH A 603 2.04 REMARK 500 ND2 ASN B 224 O HOH B 502 2.04 REMARK 500 O LYS A 304 O HOH A 601 2.09 REMARK 500 NZ LYS B 86 O HOH B 503 2.11 REMARK 500 OD1 ASP B 311 O HOH B 504 2.12 REMARK 500 O HOH B 632 O HOH B 644 2.13 REMARK 500 O HOH B 741 O HOH B 825 2.14 REMARK 500 O HOH A 928 O HOH A 1015 2.15 REMARK 500 O HOH A 721 O HOH A 1086 2.15 REMARK 500 O HOH B 867 O HOH B 876 2.15 REMARK 500 O ASP B 311 O HOH B 505 2.16 REMARK 500 O HOH A 924 O HOH A 994 2.16 REMARK 500 O HOH A 697 O HOH A 875 2.16 REMARK 500 O HOH B 757 O HOH B 765 2.17 REMARK 500 O HOH A 1070 O HOH A 1109 2.18 REMARK 500 O HOH B 602 O HOH B 733 2.18 REMARK 500 O HOH A 1015 O HOH A 1092 2.19 REMARK 500 O HOH A 1025 O HOH A 1040 2.19 REMARK 500 OG1 THR B 52 O HOH B 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 503 O HOH B 507 1455 2.03 REMARK 500 O HOH B 766 O HOH B 837 1655 2.09 REMARK 500 O HOH A 881 O HOH B 849 1455 2.14 REMARK 500 O HOH B 656 O HOH B 812 1655 2.18 REMARK 500 O HOH A 630 O HOH B 760 1656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 227 CE1 PHE B 227 CZ -0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 CG - CD - NE ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG A 54 CD - NE - CZ ANGL. DEV. = 25.1 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LYS A 194 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 ASN A 224 CB - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 ASN A 224 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 ASN A 224 OD1 - CG - ND2 ANGL. DEV. = -25.3 DEGREES REMARK 500 ASN A 224 CB - CG - OD1 ANGL. DEV. = 55.1 DEGREES REMARK 500 ASN A 224 CB - CG - ND2 ANGL. DEV. = -35.2 DEGREES REMARK 500 ASN A 224 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 TYR A 284 CB - CG - CD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR A 284 CB - CG - CD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLN B 122 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 LYS B 200 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 ASN B 224 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 PHE B 227 CB - CG - CD2 ANGL. DEV. = -37.4 DEGREES REMARK 500 PHE B 227 CD1 - CG - CD2 ANGL. DEV. = -25.7 DEGREES REMARK 500 PHE B 227 CB - CG - CD1 ANGL. DEV. = 31.7 DEGREES REMARK 500 PHE B 227 CG - CD1 - CE1 ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 98 -67.73 -123.69 REMARK 500 SER A 213 -112.97 46.29 REMARK 500 ASP A 268 118.77 -38.22 REMARK 500 LYS A 310 -5.70 -59.70 REMARK 500 ASN A 312 57.91 -160.73 REMARK 500 LYS A 451 -67.17 -94.09 REMARK 500 THR B 61 3.30 -63.15 REMARK 500 VAL B 98 -75.84 -132.63 REMARK 500 LEU B 209 122.36 -171.23 REMARK 500 SER B 213 -116.28 44.61 REMARK 500 LYS B 306 -32.05 -134.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 226 PHE B 227 -148.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 54 0.12 SIDE CHAIN REMARK 500 ASN B 224 0.11 SIDE CHAIN REMARK 500 PHE B 227 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1130 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 884 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 885 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 886 DISTANCE = 7.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 501 DBREF 7EHO A 20 459 PDB 7EHO 7EHO 20 459 DBREF 7EHO B 20 459 PDB 7EHO 7EHO 20 459 SEQRES 1 A 440 MET GLY CYS GLY GLY THR ALA ASP LYS ASN PRO ALA GLY SEQRES 2 A 440 ASN ASN GLY ASP SER ALA LYS PRO ALA GLU THR LYS SER SEQRES 3 A 440 GLY ASP SER VAL SER LEU THR LEU ARG HIS ILE ASN VAL SEQRES 4 A 440 ARG ASP THR ALA LYS ASN THR LEU ALA LEU LEU GLU LYS SEQRES 5 A 440 VAL VAL LYS LYS THR GLU ALA GLU VAL PRO GLY ALA THR SEQRES 6 A 440 PHE LYS LEU ASP GLY VAL GLU ASP THR VAL ASN ARG ASP SEQRES 7 A 440 VAL LYS LEU LYS ALA GLU MET ALA ALA GLY LYS PRO PRO SEQRES 8 A 440 GLN ILE PHE ASN LEU PHE GLY GLY ALA ASP THR GLN ASN SEQRES 9 A 440 TYR ALA LYS ALA GLY HIS LEU LEU PRO LEU ASN ASP ILE SEQRES 10 A 440 LEU LYS GLU LEU GLY LEU GLU ASP LYS PHE PHE GLU LEU SEQRES 11 A 440 ARG GLU PHE THR VAL ASP GLY LYS ILE TYR GLY LEU PRO SEQRES 12 A 440 GLU ALA GLY PHE VAL GLU GLY PHE TYR TYR ASN THR LYS SEQRES 13 A 440 LEU PHE ALA ASP ALA GLY ILE THR SER ALA PRO LYS THR SEQRES 14 A 440 TRP ASP GLU PHE THR LYS ALA LEU GLU ALA LEU LYS ALA SEQRES 15 A 440 LYS ASN ILE THR PRO ILE ALA LEU GLY GLY GLY SER GLY SEQRES 16 A 440 ASP GLY TRP ALA ILE ASN MET LEU ALA ASN SER LEU PHE SEQRES 17 A 440 VAL ALA THR ALA GLY PRO GLU ALA GLN GLU GLY PHE ALA SEQRES 18 A 440 LYS GLY THR THR LYS TRP THR ASP PRO ALA VAL LEU ASP SEQRES 19 A 440 GLY PHE LYS ARG LEU LYS ASP LEU LYS ASP LYS GLY TYR SEQRES 20 A 440 ILE ASP PRO ASN VAL LEU GLY LEU LYS TYR SER GLU GLY SEQRES 21 A 440 GLN ALA LYS PHE TYR THR GLY GLN ALA ALA MET LEU PHE SEQRES 22 A 440 ASP GLY SER TRP ALA THR SER ALA ILE LEU ASP LYS ASP SEQRES 23 A 440 LYS SER THR VAL LYS ASP ASN VAL GLY TYR PHE ARG PHE SEQRES 24 A 440 PRO ASN ILE GLY GLY LYS GLY ASP ASN LEU ILE ASN GLY SEQRES 25 A 440 GLY TRP SER ASN GLY TYR GLY PHE SER SER HIS LEU ASN SEQRES 26 A 440 ASP ALA GLU LYS LYS ALA VAL LYS ALA PHE ILE LYS ASN SEQRES 27 A 440 PHE TYR THR LEU GLU ILE GLN GLY GLU ALA LEU GLY ARG SEQRES 28 A 440 ASP ASN ARG VAL PRO SER MET LYS GLY VAL PRO THR PRO SEQRES 29 A 440 ALA GLU ALA ALA PRO LEU THR LYS ALA ILE GLY GLU ALA SEQRES 30 A 440 GLN ALA SER ALA LYS ALA ALA PHE PRO ALA PHE ASP ALA SEQRES 31 A 440 LEU VAL GLN PRO LYS VAL LYS VAL THR LEU GLU GLN SER SEQRES 32 A 440 VAL GLN GLU LEU LEU GLY GLY GLN LEU THR PRO GLU LYS SEQRES 33 A 440 LEU VAL GLU LYS MET GLN LYS VAL GLN ASP GLU ALA ASN SEQRES 34 A 440 ALA GLY LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 440 MET GLY CYS GLY GLY THR ALA ASP LYS ASN PRO ALA GLY SEQRES 2 B 440 ASN ASN GLY ASP SER ALA LYS PRO ALA GLU THR LYS SER SEQRES 3 B 440 GLY ASP SER VAL SER LEU THR LEU ARG HIS ILE ASN VAL SEQRES 4 B 440 ARG ASP THR ALA LYS ASN THR LEU ALA LEU LEU GLU LYS SEQRES 5 B 440 VAL VAL LYS LYS THR GLU ALA GLU VAL PRO GLY ALA THR SEQRES 6 B 440 PHE LYS LEU ASP GLY VAL GLU ASP THR VAL ASN ARG ASP SEQRES 7 B 440 VAL LYS LEU LYS ALA GLU MET ALA ALA GLY LYS PRO PRO SEQRES 8 B 440 GLN ILE PHE ASN LEU PHE GLY GLY ALA ASP THR GLN ASN SEQRES 9 B 440 TYR ALA LYS ALA GLY HIS LEU LEU PRO LEU ASN ASP ILE SEQRES 10 B 440 LEU LYS GLU LEU GLY LEU GLU ASP LYS PHE PHE GLU LEU SEQRES 11 B 440 ARG GLU PHE THR VAL ASP GLY LYS ILE TYR GLY LEU PRO SEQRES 12 B 440 GLU ALA GLY PHE VAL GLU GLY PHE TYR TYR ASN THR LYS SEQRES 13 B 440 LEU PHE ALA ASP ALA GLY ILE THR SER ALA PRO LYS THR SEQRES 14 B 440 TRP ASP GLU PHE THR LYS ALA LEU GLU ALA LEU LYS ALA SEQRES 15 B 440 LYS ASN ILE THR PRO ILE ALA LEU GLY GLY GLY SER GLY SEQRES 16 B 440 ASP GLY TRP ALA ILE ASN MET LEU ALA ASN SER LEU PHE SEQRES 17 B 440 VAL ALA THR ALA GLY PRO GLU ALA GLN GLU GLY PHE ALA SEQRES 18 B 440 LYS GLY THR THR LYS TRP THR ASP PRO ALA VAL LEU ASP SEQRES 19 B 440 GLY PHE LYS ARG LEU LYS ASP LEU LYS ASP LYS GLY TYR SEQRES 20 B 440 ILE ASP PRO ASN VAL LEU GLY LEU LYS TYR SER GLU GLY SEQRES 21 B 440 GLN ALA LYS PHE TYR THR GLY GLN ALA ALA MET LEU PHE SEQRES 22 B 440 ASP GLY SER TRP ALA THR SER ALA ILE LEU ASP LYS ASP SEQRES 23 B 440 LYS SER THR VAL LYS ASP ASN VAL GLY TYR PHE ARG PHE SEQRES 24 B 440 PRO ASN ILE GLY GLY LYS GLY ASP ASN LEU ILE ASN GLY SEQRES 25 B 440 GLY TRP SER ASN GLY TYR GLY PHE SER SER HIS LEU ASN SEQRES 26 B 440 ASP ALA GLU LYS LYS ALA VAL LYS ALA PHE ILE LYS ASN SEQRES 27 B 440 PHE TYR THR LEU GLU ILE GLN GLY GLU ALA LEU GLY ARG SEQRES 28 B 440 ASP ASN ARG VAL PRO SER MET LYS GLY VAL PRO THR PRO SEQRES 29 B 440 ALA GLU ALA ALA PRO LEU THR LYS ALA ILE GLY GLU ALA SEQRES 30 B 440 GLN ALA SER ALA LYS ALA ALA PHE PRO ALA PHE ASP ALA SEQRES 31 B 440 LEU VAL GLN PRO LYS VAL LYS VAL THR LEU GLU GLN SER SEQRES 32 B 440 VAL GLN GLU LEU LEU GLY GLY GLN LEU THR PRO GLU LYS SEQRES 33 B 440 LEU VAL GLU LYS MET GLN LYS VAL GLN ASP GLU ALA ASN SEQRES 34 B 440 ALA GLY LYS LEU GLU HIS HIS HIS HIS HIS HIS HET PG4 A 501 13 HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 PG4 C8 H18 O5 FORMUL 4 HOH *916(H2 O) HELIX 1 AA1 ARG A 59 THR A 61 5 3 HELIX 2 AA2 ALA A 62 VAL A 80 1 19 HELIX 3 AA3 GLU A 91 VAL A 98 1 8 HELIX 4 AA4 VAL A 98 ALA A 106 1 9 HELIX 5 AA5 GLY A 118 ALA A 127 1 10 HELIX 6 AA6 LEU A 133 LEU A 140 1 8 HELIX 7 AA7 LEU A 149 GLU A 151 5 3 HELIX 8 AA8 THR A 174 ALA A 180 1 7 HELIX 9 AA9 THR A 188 LYS A 202 1 15 HELIX 10 AB1 ASP A 215 GLY A 232 1 18 HELIX 11 AB2 PRO A 233 ALA A 240 1 8 HELIX 12 AB3 ASP A 248 LYS A 264 1 17 HELIX 13 AB4 ASN A 270 LEU A 274 5 5 HELIX 14 AB5 LYS A 275 THR A 285 1 11 HELIX 15 AB6 ALA A 297 LEU A 302 1 6 HELIX 16 AB7 ASN A 344 TYR A 359 1 16 HELIX 17 AB8 THR A 360 ASN A 372 1 13 HELIX 18 AB9 ALA A 387 SER A 399 1 13 HELIX 19 AC1 ALA A 406 LEU A 410 5 5 HELIX 20 AC2 GLN A 412 GLY A 428 1 17 HELIX 21 AC3 THR A 432 ALA A 449 1 18 HELIX 22 AC4 ARG B 59 THR B 61 5 3 HELIX 23 AC5 ALA B 62 VAL B 80 1 19 HELIX 24 AC6 GLU B 91 VAL B 98 1 8 HELIX 25 AC7 VAL B 98 ALA B 106 1 9 HELIX 26 AC8 GLY B 118 ALA B 127 1 10 HELIX 27 AC9 LEU B 133 LEU B 140 1 8 HELIX 28 AD1 LEU B 149 GLU B 151 5 3 HELIX 29 AD2 THR B 174 ALA B 180 1 7 HELIX 30 AD3 THR B 188 ALA B 201 1 14 HELIX 31 AD4 ASP B 215 GLY B 232 1 18 HELIX 32 AD5 PRO B 233 PHE B 239 1 7 HELIX 33 AD6 ASP B 248 LYS B 264 1 17 HELIX 34 AD7 ASN B 270 LEU B 274 5 5 HELIX 35 AD8 LYS B 275 THR B 285 1 11 HELIX 36 AD9 ALA B 297 LEU B 302 1 6 HELIX 37 AE1 ASN B 344 TYR B 359 1 16 HELIX 38 AE2 THR B 360 ASN B 372 1 13 HELIX 39 AE3 ALA B 387 SER B 399 1 13 HELIX 40 AE4 ALA B 406 LEU B 410 5 5 HELIX 41 AE5 GLN B 412 GLY B 428 1 17 HELIX 42 AE6 THR B 432 GLY B 450 1 19 SHEET 1 AA1 5 ALA A 83 GLY A 89 0 SHEET 2 AA1 5 VAL A 49 HIS A 55 1 N LEU A 51 O LYS A 86 SHEET 3 AA1 5 ILE A 112 PHE A 116 1 O ILE A 112 N ARG A 54 SHEET 4 AA1 5 LEU A 328 PHE A 339 -1 O GLY A 336 N LEU A 115 SHEET 5 AA1 5 ALA A 402 PHE A 404 1 O PHE A 404 N GLY A 331 SHEET 1 AA2 7 ALA A 83 GLY A 89 0 SHEET 2 AA2 7 VAL A 49 HIS A 55 1 N LEU A 51 O LYS A 86 SHEET 3 AA2 7 ILE A 112 PHE A 116 1 O ILE A 112 N ARG A 54 SHEET 4 AA2 7 LEU A 328 PHE A 339 -1 O GLY A 336 N LEU A 115 SHEET 5 AA2 7 LEU A 161 ASN A 173 -1 N LEU A 161 O TYR A 337 SHEET 6 AA2 7 MET A 290 GLY A 294 -1 O LEU A 291 N TYR A 171 SHEET 7 AA2 7 ILE A 207 ALA A 208 1 N ALA A 208 O MET A 290 SHEET 1 AA3 3 VAL A 374 PRO A 375 0 SHEET 2 AA3 3 LEU A 161 ASN A 173 -1 N GLY A 165 O VAL A 374 SHEET 3 AA3 3 VAL A 313 PHE A 316 -1 O GLY A 314 N TYR A 172 SHEET 1 AA4 2 THR A 153 VAL A 154 0 SHEET 2 AA4 2 LYS A 157 ILE A 158 -1 O LYS A 157 N VAL A 154 SHEET 1 AA5 5 THR B 84 GLY B 89 0 SHEET 2 AA5 5 SER B 50 HIS B 55 1 N LEU B 53 O ASP B 88 SHEET 3 AA5 5 ILE B 112 PHE B 116 1 O ILE B 112 N ARG B 54 SHEET 4 AA5 5 LEU B 328 PHE B 339 -1 O GLY B 336 N LEU B 115 SHEET 5 AA5 5 ALA B 402 PHE B 404 1 O PHE B 404 N GLY B 331 SHEET 1 AA6 7 THR B 84 GLY B 89 0 SHEET 2 AA6 7 SER B 50 HIS B 55 1 N LEU B 53 O ASP B 88 SHEET 3 AA6 7 ILE B 112 PHE B 116 1 O ILE B 112 N ARG B 54 SHEET 4 AA6 7 LEU B 328 PHE B 339 -1 O GLY B 336 N LEU B 115 SHEET 5 AA6 7 LEU B 161 ASN B 173 -1 N LEU B 161 O TYR B 337 SHEET 6 AA6 7 MET B 290 GLY B 294 -1 O LEU B 291 N TYR B 171 SHEET 7 AA6 7 ILE B 207 ALA B 208 1 N ALA B 208 O MET B 290 SHEET 1 AA7 3 VAL B 374 PRO B 375 0 SHEET 2 AA7 3 LEU B 161 ASN B 173 -1 N GLY B 165 O VAL B 374 SHEET 3 AA7 3 VAL B 313 PHE B 316 -1 O GLY B 314 N TYR B 172 SHEET 1 AA8 2 THR B 153 VAL B 154 0 SHEET 2 AA8 2 LYS B 157 ILE B 158 -1 O LYS B 157 N VAL B 154 SITE 1 AC1 6 GLU A 362 PRO A 381 HOH A 652 HOH A 868 SITE 2 AC1 6 ASN B 203 GLY B 286 CRYST1 61.782 75.978 87.493 90.00 107.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016186 0.000000 0.004989 0.00000 SCALE2 0.000000 0.013162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011960 0.00000