HEADER TRANSFERASE 02-APR-21 7EJV TITLE THE CO-CRYSTAL STRUCTURE OF DYRK2 WITH YK-2-69 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 2; COMPND 4 CHAIN: A; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 9 2; COMPND 10 CHAIN: B; COMPND 11 EC: 2.7.12.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: DYRK2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHORYLASE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,Y.XIAO,K.YUAN,W.KUANG,Y.XIUQUAN,P.YANG REVDAT 4 13-NOV-24 7EJV 1 REMARK REVDAT 3 29-NOV-23 7EJV 1 REMARK REVDAT 2 19-OCT-22 7EJV 1 JRNL REVDAT 1 06-APR-22 7EJV 0 JRNL AUTH K.YUAN,Z.LI,W.KUANG,X.WANG,M.JI,W.CHEN,J.DING,J.LI,W.MIN, JRNL AUTH 2 C.SUN,X.YE,M.LU,L.WANG,H.GE,Y.JIANG,H.HAO,Y.XIAO,P.YANG JRNL TITL TARGETING DUAL-SPECIFICITY TYROSINE JRNL TITL 2 PHOSPHORYLATION-REGULATED KINASE 2 WITH A HIGHLY SELECTIVE JRNL TITL 3 INHIBITOR FOR THE TREATMENT OF PROSTATE CANCER. JRNL REF NAT COMMUN V. 13 2903 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35614066 JRNL DOI 10.1038/S41467-022-30581-4 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.4803 - 5.1732 1.00 4136 135 0.1914 0.2610 REMARK 3 2 5.1732 - 4.5280 1.00 4146 140 0.1554 0.1943 REMARK 3 3 4.5280 - 4.1180 1.00 4122 136 0.1570 0.2151 REMARK 3 4 4.1180 - 3.8250 1.00 4134 139 0.1762 0.2514 REMARK 3 5 3.8250 - 3.6009 1.00 4113 133 0.1820 0.2101 REMARK 3 6 3.6009 - 3.4215 1.00 4139 142 0.1866 0.2478 REMARK 3 7 3.4215 - 3.2732 1.00 4139 139 0.2001 0.2155 REMARK 3 8 3.2732 - 3.1477 1.00 4170 141 0.2263 0.3096 REMARK 3 9 3.1477 - 3.0395 1.00 4105 137 0.2436 0.3031 REMARK 3 10 3.0395 - 2.9448 1.00 4104 139 0.2519 0.2709 REMARK 3 11 2.9448 - 2.8608 1.00 4115 141 0.2631 0.3541 REMARK 3 12 2.8608 - 2.7857 1.00 4154 137 0.2829 0.3106 REMARK 3 13 2.7857 - 2.7179 1.00 4164 140 0.2802 0.3370 REMARK 3 14 2.7179 - 2.6563 1.00 4049 136 0.2916 0.2928 REMARK 3 15 2.6563 - 2.5999 1.00 4194 139 0.2999 0.3570 REMARK 3 16 2.5480 - 2.5000 1.00 4210 138 0.3636 0.3922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6519 REMARK 3 ANGLE : 1.302 8801 REMARK 3 CHIRALITY : 0.069 909 REMARK 3 PLANARITY : 0.009 1135 REMARK 3 DIHEDRAL : 10.043 5506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.5400 -11.1025 41.7861 REMARK 3 T TENSOR REMARK 3 T11: 0.3904 T22: 0.3908 REMARK 3 T33: 0.4626 T12: 0.0213 REMARK 3 T13: 0.0137 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 0.6919 L22: 2.5322 REMARK 3 L33: 0.6782 L12: -0.0628 REMARK 3 L13: -0.2115 L23: 0.5169 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0802 S13: 0.1786 REMARK 3 S21: -0.5714 S22: -0.0073 S23: 0.0690 REMARK 3 S31: -0.1364 S32: 0.0024 S33: -0.0041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 80 THROUGH 87 OR REMARK 3 (RESID 88 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 89 REMARK 3 THROUGH 133 OR (RESID 134 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 135 THROUGH 215 OR RESID 217 REMARK 3 THROUGH 371 OR RESID 373 THROUGH 443 OR REMARK 3 RESID 445 THROUGH 463 OR (RESID 464 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )))) REMARK 3 SELECTION : (CHAIN B AND (RESID 80 THROUGH 215 OR REMARK 3 RESID 217 THROUGH 371 OR RESID 373 REMARK 3 THROUGH 396 OR RESID 399 THROUGH 443 OR REMARK 3 RESID 445 THROUGH 464)) REMARK 3 ATOM PAIRS NUMBER : 3571 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300020657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LXD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.5, 8% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.86650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 145.86650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.69350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.69350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 145.86650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.43000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.69350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.86650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.43000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.69350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 397 REMARK 465 SER A 398 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 GLN B 134 CG CD OE1 NE2 REMARK 470 ARG B 464 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 468 CG CD CE NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PTR A 309 REMARK 475 PTR B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2P PTR A 309 O HOH A 601 2.08 REMARK 500 OE2 GLU A 98 NH2 ARG A 221 2.12 REMARK 500 NH1 ARG B 181 OE1 GLU B 183 2.16 REMARK 500 OH TYR B 149 OE1 GLU B 216 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 442 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 116 82.71 -69.12 REMARK 500 ASN A 126 33.46 73.32 REMARK 500 ASN A 127 60.43 39.84 REMARK 500 ARG A 148 -48.90 -136.81 REMARK 500 LEU A 152 -155.32 -102.08 REMARK 500 ASN A 222 54.42 34.89 REMARK 500 SER A 232 -154.29 -105.25 REMARK 500 ASP A 275 47.75 -152.42 REMARK 500 ASP A 295 74.47 52.95 REMARK 500 PTR A 309 74.98 -104.17 REMARK 500 GLN A 311 145.84 76.47 REMARK 500 ASP A 432 108.46 -58.97 REMARK 500 ARG B 148 -48.17 -143.39 REMARK 500 LEU B 152 -79.07 -115.09 REMARK 500 SER B 232 -158.88 -103.72 REMARK 500 ASP B 275 43.79 -153.98 REMARK 500 ASP B 295 76.66 52.81 REMARK 500 GLN B 311 145.19 74.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EJV A 78 464 UNP Q92630 DYRK2_HUMAN 151 537 DBREF 7EJV B 80 470 UNP Q92630 DYRK2_HUMAN 153 543 SEQRES 1 A 387 ALA THR PRO MET THR PRO GLU GLN ALA MET LYS GLN TYR SEQRES 2 A 387 MET GLN LYS LEU THR ALA PHE GLU HIS HIS GLU ILE PHE SEQRES 3 A 387 SER TYR PRO GLU ILE TYR PHE LEU GLY LEU ASN ALA LYS SEQRES 4 A 387 LYS ARG GLN GLY MET THR GLY GLY PRO ASN ASN GLY GLY SEQRES 5 A 387 TYR ASP ASP ASP GLN GLY SER TYR VAL GLN VAL PRO HIS SEQRES 6 A 387 ASP HIS VAL ALA TYR ARG TYR GLU VAL LEU LYS VAL ILE SEQRES 7 A 387 GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR ASP SEQRES 8 A 387 HIS LYS VAL HIS GLN HIS VAL ALA LEU LYS MET VAL ARG SEQRES 9 A 387 ASN GLU LYS ARG PHE HIS ARG GLN ALA ALA GLU GLU ILE SEQRES 10 A 387 ARG ILE LEU GLU HIS LEU ARG LYS GLN ASP LYS ASP ASN SEQRES 11 A 387 THR MET ASN VAL ILE HIS MET LEU GLU ASN PHE THR PHE SEQRES 12 A 387 ARG ASN HIS ILE CYS MET THR PHE GLU LEU LEU SER MET SEQRES 13 A 387 ASN LEU TYR GLU LEU ILE LYS LYS ASN LYS PHE GLN GLY SEQRES 14 A 387 PHE SER LEU PRO LEU VAL ARG LYS PHE ALA HIS SER ILE SEQRES 15 A 387 LEU GLN CYS LEU ASP ALA LEU HIS LYS ASN ARG ILE ILE SEQRES 16 A 387 HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU LEU LYS GLN SEQRES 17 A 387 GLN GLY ARG SER GLY ILE LYS VAL ILE ASP PHE GLY SER SEQRES 18 A 387 SER CYS TYR GLU HIS GLN ARG VAL TYR THR PTR ILE GLN SEQRES 19 A 387 SER ARG PHE TYR ARG ALA PRO GLU VAL ILE LEU GLY ALA SEQRES 20 A 387 ARG TYR GLY MET PRO ILE ASP MET TRP SER LEU GLY CYS SEQRES 21 A 387 ILE LEU ALA GLU LEU LEU THR GLY TYR PRO LEU LEU PRO SEQRES 22 A 387 GLY GLU ASP GLU GLY ASP GLN LEU ALA CYS MET ILE GLU SEQRES 23 A 387 LEU LEU GLY MET PRO SER GLN LYS LEU LEU ASP ALA SER SEQRES 24 A 387 LYS ARG ALA LYS ASN PHE VAL SER SER LYS GLY TYR PRO SEQRES 25 A 387 ARG TYR CYS THR VAL THR THR LEU SER ASP GLY SER VAL SEQRES 26 A 387 VAL LEU ASN GLY GLY ARG SER ARG ARG GLY LYS LEU ARG SEQRES 27 A 387 GLY PRO PRO GLU SER ARG GLU TRP GLY ASN ALA LEU LYS SEQRES 28 A 387 GLY CYS ASP ASP PRO LEU PHE LEU ASP PHE LEU LYS GLN SEQRES 29 A 387 CYS LEU GLU TRP ASP PRO ALA VAL ARG MET THR PRO GLY SEQRES 30 A 387 GLN ALA LEU ARG HIS PRO TRP LEU ARG ARG SEQRES 1 B 391 PRO MET THR PRO GLU GLN ALA MET LYS GLN TYR MET GLN SEQRES 2 B 391 LYS LEU THR ALA PHE GLU HIS HIS GLU ILE PHE SER TYR SEQRES 3 B 391 PRO GLU ILE TYR PHE LEU GLY LEU ASN ALA LYS LYS ARG SEQRES 4 B 391 GLN GLY MET THR GLY GLY PRO ASN ASN GLY GLY TYR ASP SEQRES 5 B 391 ASP ASP GLN GLY SER TYR VAL GLN VAL PRO HIS ASP HIS SEQRES 6 B 391 VAL ALA TYR ARG TYR GLU VAL LEU LYS VAL ILE GLY LYS SEQRES 7 B 391 GLY SER PHE GLY GLN VAL VAL LYS ALA TYR ASP HIS LYS SEQRES 8 B 391 VAL HIS GLN HIS VAL ALA LEU LYS MET VAL ARG ASN GLU SEQRES 9 B 391 LYS ARG PHE HIS ARG GLN ALA ALA GLU GLU ILE ARG ILE SEQRES 10 B 391 LEU GLU HIS LEU ARG LYS GLN ASP LYS ASP ASN THR MET SEQRES 11 B 391 ASN VAL ILE HIS MET LEU GLU ASN PHE THR PHE ARG ASN SEQRES 12 B 391 HIS ILE CYS MET THR PHE GLU LEU LEU SER MET ASN LEU SEQRES 13 B 391 TYR GLU LEU ILE LYS LYS ASN LYS PHE GLN GLY PHE SER SEQRES 14 B 391 LEU PRO LEU VAL ARG LYS PHE ALA HIS SER ILE LEU GLN SEQRES 15 B 391 CYS LEU ASP ALA LEU HIS LYS ASN ARG ILE ILE HIS CYS SEQRES 16 B 391 ASP LEU LYS PRO GLU ASN ILE LEU LEU LYS GLN GLN GLY SEQRES 17 B 391 ARG SER GLY ILE LYS VAL ILE ASP PHE GLY SER SER CYS SEQRES 18 B 391 TYR GLU HIS GLN ARG VAL TYR THR PTR ILE GLN SER ARG SEQRES 19 B 391 PHE TYR ARG ALA PRO GLU VAL ILE LEU GLY ALA ARG TYR SEQRES 20 B 391 GLY MET PRO ILE ASP MET TRP SER LEU GLY CYS ILE LEU SEQRES 21 B 391 ALA GLU LEU LEU THR GLY TYR PRO LEU LEU PRO GLY GLU SEQRES 22 B 391 ASP GLU GLY ASP GLN LEU ALA CYS MET ILE GLU LEU LEU SEQRES 23 B 391 GLY MET PRO SER GLN LYS LEU LEU ASP ALA SER LYS ARG SEQRES 24 B 391 ALA LYS ASN PHE VAL SER SER LYS GLY TYR PRO ARG TYR SEQRES 25 B 391 CYS THR VAL THR THR LEU SER ASP GLY SER VAL VAL LEU SEQRES 26 B 391 ASN GLY GLY ARG SER ARG ARG GLY LYS LEU ARG GLY PRO SEQRES 27 B 391 PRO GLU SER ARG GLU TRP GLY ASN ALA LEU LYS GLY CYS SEQRES 28 B 391 ASP ASP PRO LEU PHE LEU ASP PHE LEU LYS GLN CYS LEU SEQRES 29 B 391 GLU TRP ASP PRO ALA VAL ARG MET THR PRO GLY GLN ALA SEQRES 30 B 391 LEU ARG HIS PRO TRP LEU ARG ARG ARG LEU PRO LYS PRO SEQRES 31 B 391 PRO MODRES 7EJV PTR A 309 TYR MODIFIED RESIDUE MODRES 7EJV PTR B 309 TYR MODIFIED RESIDUE HET PTR A 309 16 HET PTR B 309 16 HET YK2 A 501 36 HET YK2 B 501 36 HETNAM PTR O-PHOSPHOTYROSINE HETNAM YK2 [6-[[4-[2-(DIMETHYLAMINO)-1,3-BENZOTHIAZOL-6-YL]-5- HETNAM 2 YK2 FLUORANYL-PYRIMIDIN-2-YL]AMINO]PYRIDIN-3-YL]-(4- HETNAM 3 YK2 ETHYLPIPERAZIN-1-YL)METHANONE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 YK2 2(C25 H27 F N8 O S) FORMUL 5 HOH *35(H2 O) HELIX 1 AA1 THR A 82 MET A 91 1 10 HELIX 2 AA2 THR A 95 ILE A 102 1 8 HELIX 3 AA3 PHE A 103 TYR A 105 5 3 HELIX 4 AA4 GLY A 124 GLY A 129 1 6 HELIX 5 AA5 GLU A 183 LYS A 202 1 20 HELIX 6 AA6 ASN A 234 ASN A 242 1 9 HELIX 7 AA7 SER A 248 ARG A 270 1 23 HELIX 8 AA8 LYS A 277 GLU A 279 5 3 HELIX 9 AA9 HIS A 303 ARG A 305 5 3 HELIX 10 AB1 SER A 312 ARG A 316 5 5 HELIX 11 AB2 ALA A 317 LEU A 322 1 6 HELIX 12 AB3 MET A 328 GLY A 345 1 18 HELIX 13 AB4 ASP A 353 GLY A 366 1 14 HELIX 14 AB5 SER A 369 ALA A 375 1 7 HELIX 15 AB6 ARG A 378 VAL A 383 1 6 HELIX 16 AB7 GLU A 422 LEU A 427 1 6 HELIX 17 AB8 ASP A 432 LEU A 443 1 12 HELIX 18 AB9 THR A 452 ARG A 458 1 7 HELIX 19 AC1 THR B 82 MET B 91 1 10 HELIX 20 AC2 GLN B 92 LEU B 94 5 3 HELIX 21 AC3 THR B 95 ILE B 102 1 8 HELIX 22 AC4 PHE B 103 TYR B 105 5 3 HELIX 23 AC5 GLY B 124 GLY B 129 1 6 HELIX 24 AC6 GLU B 183 LYS B 202 1 20 HELIX 25 AC7 ASN B 234 ASN B 242 1 9 HELIX 26 AC8 SER B 248 ASN B 269 1 22 HELIX 27 AC9 LYS B 277 GLU B 279 5 3 HELIX 28 AD1 HIS B 303 ARG B 305 5 3 HELIX 29 AD2 SER B 312 ARG B 316 5 5 HELIX 30 AD3 ALA B 317 LEU B 322 1 6 HELIX 31 AD4 MET B 328 GLY B 345 1 18 HELIX 32 AD5 ASP B 353 GLY B 366 1 14 HELIX 33 AD6 SER B 369 ALA B 375 1 7 HELIX 34 AD7 ARG B 378 PHE B 382 5 5 HELIX 35 AD8 GLU B 422 LEU B 427 1 6 HELIX 36 AD9 ASP B 432 LEU B 443 1 12 HELIX 37 AE1 THR B 452 ARG B 458 1 7 HELIX 38 AE2 HIS B 459 ARG B 463 5 5 SHEET 1 AA1 6 HIS A 144 VAL A 145 0 SHEET 2 AA1 6 TYR A 149 GLY A 158 -1 O TYR A 149 N VAL A 145 SHEET 3 AA1 6 GLY A 161 ASP A 168 -1 O VAL A 163 N ILE A 155 SHEET 4 AA1 6 GLN A 173 VAL A 180 -1 O VAL A 175 N ALA A 166 SHEET 5 AA1 6 HIS A 223 PHE A 228 -1 O MET A 226 N LYS A 178 SHEET 6 AA1 6 MET A 214 PHE A 220 -1 N LEU A 215 O THR A 227 SHEET 1 AA2 2 ILE A 271 ILE A 272 0 SHEET 2 AA2 2 CYS A 300 TYR A 301 -1 O CYS A 300 N ILE A 272 SHEET 1 AA3 2 ILE A 281 LEU A 283 0 SHEET 2 AA3 2 ILE A 291 VAL A 293 -1 O LYS A 292 N LEU A 282 SHEET 1 AA4 2 THR A 393 THR A 395 0 SHEET 2 AA4 2 VAL A 403 ASN A 405 -1 O ASN A 405 N THR A 393 SHEET 1 AA5 2 GLY A 407 ARG A 408 0 SHEET 2 AA5 2 LEU A 414 ARG A 415 -1 O ARG A 415 N GLY A 407 SHEET 1 AA6 6 HIS B 144 VAL B 145 0 SHEET 2 AA6 6 TYR B 149 GLY B 158 -1 O TYR B 149 N VAL B 145 SHEET 3 AA6 6 GLY B 161 ASP B 168 -1 O VAL B 163 N ILE B 155 SHEET 4 AA6 6 GLN B 173 VAL B 180 -1 O LEU B 177 N VAL B 164 SHEET 5 AA6 6 ILE B 224 GLU B 229 -1 O MET B 226 N LYS B 178 SHEET 6 AA6 6 MET B 214 THR B 219 -1 N PHE B 218 O CYS B 225 SHEET 1 AA7 2 ILE B 271 ILE B 272 0 SHEET 2 AA7 2 CYS B 300 TYR B 301 -1 O CYS B 300 N ILE B 272 SHEET 1 AA8 2 ILE B 281 LEU B 283 0 SHEET 2 AA8 2 ILE B 291 VAL B 293 -1 O LYS B 292 N LEU B 282 SHEET 1 AA9 2 THR B 393 THR B 396 0 SHEET 2 AA9 2 VAL B 402 ASN B 405 -1 O ASN B 405 N THR B 393 SHEET 1 AB1 2 GLY B 407 ARG B 408 0 SHEET 2 AB1 2 LEU B 414 ARG B 415 -1 O ARG B 415 N GLY B 407 LINK C THR A 308 N PTR A 309 1555 1555 1.33 LINK C PTR A 309 N ILE A 310 1555 1555 1.33 LINK C THR B 308 N PTR B 309 1555 1555 1.32 LINK C PTR B 309 N ILE B 310 1555 1555 1.33 CRYST1 60.860 129.387 291.733 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003428 0.00000