HEADER UNKNOWN FUNCTION 07-APR-21 7EL1 TITLE STRUCTURE OF A PROTEIN FROM BACTERIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SACAS9; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (73-MER); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (28-MER); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'-D(*TP*TP*GP*AP*AP*TP*AP*G)-3'); COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: 100AA; COMPND 22 CHAIN: E; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CAS9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 10 ORGANISM_TAXID: 1280; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 14 ORGANISM_TAXID: 1280; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 18 ORGANISM_TAXID: 1280; SOURCE 19 MOL_ID: 5; SOURCE 20 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 21 ORGANISM_TAXID: 1280; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,Y.ZHU,Z.HUANG REVDAT 2 29-NOV-23 7EL1 1 REMARK REVDAT 1 28-JUL-21 7EL1 0 JRNL AUTH H.LIU,Y.ZHU,Z.LU,Z.HUANG JRNL TITL STRUCTURAL BASIS OF STAPHYLOCOCCUS AUREUS CAS9 INHIBITION BY JRNL TITL 2 ACRIIA14. JRNL REF NUCLEIC ACIDS RES. V. 49 6587 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34107040 JRNL DOI 10.1093/NAR/GKAB487 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.11 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 116174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.3400 - 2.2200 1.00 0 0 0.0000 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 68.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5CZZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M SODIUM CITRATE DIHYDRATE, 0.3M REMARK 280 IMIDAZOL-HCL (PH 10.0), 0.02M SODIUM MALONATE (PH 7.0), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 165.29250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.61100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 165.29250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.61100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 725 REMARK 465 LYS A 726 REMARK 465 VAL A 727 REMARK 465 MET A 728 REMARK 465 GLU A 729 REMARK 465 ASN A 730 REMARK 465 GLN A 731 REMARK 465 MET A 732 REMARK 465 PHE A 733 REMARK 465 GLU A 734 REMARK 465 GLU A 735 REMARK 465 LYS A 736 REMARK 465 GLN A 737 REMARK 465 ALA A 738 REMARK 465 GLU A 739 REMARK 465 SER A 740 REMARK 465 MET A 741 REMARK 465 GLY A 1053 REMARK 465 MET E 1 REMARK 465 LYS E 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ASN A 130 CG OD1 ND2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ASP A 309 CG OD1 OD2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 GLN A 432 CG CD OE1 NE2 REMARK 470 ARG A 480 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 ASN A 498 CG OD1 ND2 REMARK 470 ARG A 499 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 510 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 LEU A 547 CG CD1 CD2 REMARK 470 PHE A 565 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 577 CG CD OE1 NE2 REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 LYS A 620 CG CD CE NZ REMARK 470 LYS A 674 CG CD CE NZ REMARK 470 LYS A 691 CG CD CE NZ REMARK 470 GLU A 693 CG CD OE1 OE2 REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 GLU A 752 CG CD OE1 OE2 REMARK 470 GLN A 759 CG CD OE1 NE2 REMARK 470 ILE A 760 CG1 CG2 CD1 REMARK 470 LYS A 761 CG CD CE NZ REMARK 470 LYS A 767 CG CD CE NZ REMARK 470 ASP A 795 CG OD1 OD2 REMARK 470 ASP A 812 CG OD1 OD2 REMARK 470 LYS A 856 CG CD CE NZ REMARK 470 GLU A 859 CG CD OE1 OE2 REMARK 470 GLU A 937 CG CD OE1 OE2 REMARK 470 LYS A 945 CG CD CE NZ REMARK 470 LYS A1011 CG CD CE NZ REMARK 470 LYS A1052 CG CD CE NZ REMARK 470 U B 73 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 73 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 73 C5 C6 REMARK 470 LYS E 12 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS A 878 CD - CE - NZ ANGL. DEV. = -24.1 DEGREES REMARK 500 G B 57 O5' - P - OP2 ANGL. DEV. = -13.2 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG C 9 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 LYS E 46 CD - CE - NZ ANGL. DEV. = -29.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 -2.30 -146.56 REMARK 500 ASN A 169 32.90 -87.39 REMARK 500 THR A 336 114.76 -165.51 REMARK 500 SER A 431 -64.24 -109.22 REMARK 500 GLU A 481 -7.33 76.90 REMARK 500 LYS A 482 167.44 163.77 REMARK 500 LYS A 485 -62.88 -97.70 REMARK 500 MET A 494 -29.87 74.80 REMARK 500 GLN A 495 177.98 176.79 REMARK 500 ASN A 516 51.46 -91.17 REMARK 500 ASP A 648 81.73 58.38 REMARK 500 ASN A 695 35.89 -91.55 REMARK 500 LYS A 767 21.80 -148.22 REMARK 500 ASP A 768 51.96 -116.18 REMARK 500 ASN A 806 -168.33 -125.51 REMARK 500 SER A 823 68.11 -150.28 REMARK 500 ASN A 888 -98.65 -109.95 REMARK 500 SER A 908 76.88 76.49 REMARK 500 GLU A 937 -72.94 -42.07 REMARK 500 ALA A1021 -153.58 -165.55 REMARK 500 ASN E 25 -165.29 -115.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 480 GLU A 481 146.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EL1 A 1 1053 UNP J7RUA5 CAS9_STAAU 1 1053 DBREF 7EL1 B 1 73 PDB 7EL1 7EL1 1 73 DBREF 7EL1 C 1 28 PDB 7EL1 7EL1 1 28 DBREF 7EL1 D 1 8 PDB 7EL1 7EL1 1 8 DBREF 7EL1 E 1 100 PDB 7EL1 7EL1 1 100 SEQADV 7EL1 ALA A 580 UNP J7RUA5 ASN 580 ENGINEERED MUTATION SEQADV 7EL1 ALA A 946 UNP J7RUA5 CYS 946 ENGINEERED MUTATION SEQRES 1 A 1053 MET LYS ARG ASN TYR ILE LEU GLY LEU ASP ILE GLY ILE SEQRES 2 A 1053 THR SER VAL GLY TYR GLY ILE ILE ASP TYR GLU THR ARG SEQRES 3 A 1053 ASP VAL ILE ASP ALA GLY VAL ARG LEU PHE LYS GLU ALA SEQRES 4 A 1053 ASN VAL GLU ASN ASN GLU GLY ARG ARG SER LYS ARG GLY SEQRES 5 A 1053 ALA ARG ARG LEU LYS ARG ARG ARG ARG HIS ARG ILE GLN SEQRES 6 A 1053 ARG VAL LYS LYS LEU LEU PHE ASP TYR ASN LEU LEU THR SEQRES 7 A 1053 ASP HIS SER GLU LEU SER GLY ILE ASN PRO TYR GLU ALA SEQRES 8 A 1053 ARG VAL LYS GLY LEU SER GLN LYS LEU SER GLU GLU GLU SEQRES 9 A 1053 PHE SER ALA ALA LEU LEU HIS LEU ALA LYS ARG ARG GLY SEQRES 10 A 1053 VAL HIS ASN VAL ASN GLU VAL GLU GLU ASP THR GLY ASN SEQRES 11 A 1053 GLU LEU SER THR LYS GLU GLN ILE SER ARG ASN SER LYS SEQRES 12 A 1053 ALA LEU GLU GLU LYS TYR VAL ALA GLU LEU GLN LEU GLU SEQRES 13 A 1053 ARG LEU LYS LYS ASP GLY GLU VAL ARG GLY SER ILE ASN SEQRES 14 A 1053 ARG PHE LYS THR SER ASP TYR VAL LYS GLU ALA LYS GLN SEQRES 15 A 1053 LEU LEU LYS VAL GLN LYS ALA TYR HIS GLN LEU ASP GLN SEQRES 16 A 1053 SER PHE ILE ASP THR TYR ILE ASP LEU LEU GLU THR ARG SEQRES 17 A 1053 ARG THR TYR TYR GLU GLY PRO GLY GLU GLY SER PRO PHE SEQRES 18 A 1053 GLY TRP LYS ASP ILE LYS GLU TRP TYR GLU MET LEU MET SEQRES 19 A 1053 GLY HIS CYS THR TYR PHE PRO GLU GLU LEU ARG SER VAL SEQRES 20 A 1053 LYS TYR ALA TYR ASN ALA ASP LEU TYR ASN ALA LEU ASN SEQRES 21 A 1053 ASP LEU ASN ASN LEU VAL ILE THR ARG ASP GLU ASN GLU SEQRES 22 A 1053 LYS LEU GLU TYR TYR GLU LYS PHE GLN ILE ILE GLU ASN SEQRES 23 A 1053 VAL PHE LYS GLN LYS LYS LYS PRO THR LEU LYS GLN ILE SEQRES 24 A 1053 ALA LYS GLU ILE LEU VAL ASN GLU GLU ASP ILE LYS GLY SEQRES 25 A 1053 TYR ARG VAL THR SER THR GLY LYS PRO GLU PHE THR ASN SEQRES 26 A 1053 LEU LYS VAL TYR HIS ASP ILE LYS ASP ILE THR ALA ARG SEQRES 27 A 1053 LYS GLU ILE ILE GLU ASN ALA GLU LEU LEU ASP GLN ILE SEQRES 28 A 1053 ALA LYS ILE LEU THR ILE TYR GLN SER SER GLU ASP ILE SEQRES 29 A 1053 GLN GLU GLU LEU THR ASN LEU ASN SER GLU LEU THR GLN SEQRES 30 A 1053 GLU GLU ILE GLU GLN ILE SER ASN LEU LYS GLY TYR THR SEQRES 31 A 1053 GLY THR HIS ASN LEU SER LEU LYS ALA ILE ASN LEU ILE SEQRES 32 A 1053 LEU ASP GLU LEU TRP HIS THR ASN ASP ASN GLN ILE ALA SEQRES 33 A 1053 ILE PHE ASN ARG LEU LYS LEU VAL PRO LYS LYS VAL ASP SEQRES 34 A 1053 LEU SER GLN GLN LYS GLU ILE PRO THR THR LEU VAL ASP SEQRES 35 A 1053 ASP PHE ILE LEU SER PRO VAL VAL LYS ARG SER PHE ILE SEQRES 36 A 1053 GLN SER ILE LYS VAL ILE ASN ALA ILE ILE LYS LYS TYR SEQRES 37 A 1053 GLY LEU PRO ASN ASP ILE ILE ILE GLU LEU ALA ARG GLU SEQRES 38 A 1053 LYS ASN SER LYS ASP ALA GLN LYS MET ILE ASN GLU MET SEQRES 39 A 1053 GLN LYS ARG ASN ARG GLN THR ASN GLU ARG ILE GLU GLU SEQRES 40 A 1053 ILE ILE ARG THR THR GLY LYS GLU ASN ALA LYS TYR LEU SEQRES 41 A 1053 ILE GLU LYS ILE LYS LEU HIS ASP MET GLN GLU GLY LYS SEQRES 42 A 1053 CYS LEU TYR SER LEU GLU ALA ILE PRO LEU GLU ASP LEU SEQRES 43 A 1053 LEU ASN ASN PRO PHE ASN TYR GLU VAL ASP HIS ILE ILE SEQRES 44 A 1053 PRO ARG SER VAL SER PHE ASP ASN SER PHE ASN ASN LYS SEQRES 45 A 1053 VAL LEU VAL LYS GLN GLU GLU ALA SER LYS LYS GLY ASN SEQRES 46 A 1053 ARG THR PRO PHE GLN TYR LEU SER SER SER ASP SER LYS SEQRES 47 A 1053 ILE SER TYR GLU THR PHE LYS LYS HIS ILE LEU ASN LEU SEQRES 48 A 1053 ALA LYS GLY LYS GLY ARG ILE SER LYS THR LYS LYS GLU SEQRES 49 A 1053 TYR LEU LEU GLU GLU ARG ASP ILE ASN ARG PHE SER VAL SEQRES 50 A 1053 GLN LYS ASP PHE ILE ASN ARG ASN LEU VAL ASP THR ARG SEQRES 51 A 1053 TYR ALA THR ARG GLY LEU MET ASN LEU LEU ARG SER TYR SEQRES 52 A 1053 PHE ARG VAL ASN ASN LEU ASP VAL LYS VAL LYS SER ILE SEQRES 53 A 1053 ASN GLY GLY PHE THR SER PHE LEU ARG ARG LYS TRP LYS SEQRES 54 A 1053 PHE LYS LYS GLU ARG ASN LYS GLY TYR LYS HIS HIS ALA SEQRES 55 A 1053 GLU ASP ALA LEU ILE ILE ALA ASN ALA ASP PHE ILE PHE SEQRES 56 A 1053 LYS GLU TRP LYS LYS LEU ASP LYS ALA LYS LYS VAL MET SEQRES 57 A 1053 GLU ASN GLN MET PHE GLU GLU LYS GLN ALA GLU SER MET SEQRES 58 A 1053 PRO GLU ILE GLU THR GLU GLN GLU TYR LYS GLU ILE PHE SEQRES 59 A 1053 ILE THR PRO HIS GLN ILE LYS HIS ILE LYS ASP PHE LYS SEQRES 60 A 1053 ASP TYR LYS TYR SER HIS ARG VAL ASP LYS LYS PRO ASN SEQRES 61 A 1053 ARG GLU LEU ILE ASN ASP THR LEU TYR SER THR ARG LYS SEQRES 62 A 1053 ASP ASP LYS GLY ASN THR LEU ILE VAL ASN ASN LEU ASN SEQRES 63 A 1053 GLY LEU TYR ASP LYS ASP ASN ASP LYS LEU LYS LYS LEU SEQRES 64 A 1053 ILE ASN LYS SER PRO GLU LYS LEU LEU MET TYR HIS HIS SEQRES 65 A 1053 ASP PRO GLN THR TYR GLN LYS LEU LYS LEU ILE MET GLU SEQRES 66 A 1053 GLN TYR GLY ASP GLU LYS ASN PRO LEU TYR LYS TYR TYR SEQRES 67 A 1053 GLU GLU THR GLY ASN TYR LEU THR LYS TYR SER LYS LYS SEQRES 68 A 1053 ASP ASN GLY PRO VAL ILE LYS LYS ILE LYS TYR TYR GLY SEQRES 69 A 1053 ASN LYS LEU ASN ALA HIS LEU ASP ILE THR ASP ASP TYR SEQRES 70 A 1053 PRO ASN SER ARG ASN LYS VAL VAL LYS LEU SER LEU LYS SEQRES 71 A 1053 PRO TYR ARG PHE ASP VAL TYR LEU ASP ASN GLY VAL TYR SEQRES 72 A 1053 LYS PHE VAL THR VAL LYS ASN LEU ASP VAL ILE LYS LYS SEQRES 73 A 1053 GLU ASN TYR TYR GLU VAL ASN SER LYS ALA TYR GLU GLU SEQRES 74 A 1053 ALA LYS LYS LEU LYS LYS ILE SER ASN GLN ALA GLU PHE SEQRES 75 A 1053 ILE ALA SER PHE TYR ASN ASN ASP LEU ILE LYS ILE ASN SEQRES 76 A 1053 GLY GLU LEU TYR ARG VAL ILE GLY VAL ASN ASN ASP LEU SEQRES 77 A 1053 LEU ASN ARG ILE GLU VAL ASN MET ILE ASP ILE THR TYR SEQRES 78 A 1053 ARG GLU TYR LEU GLU ASN MET ASN ASP LYS ARG PRO PRO SEQRES 79 A 1053 ARG ILE ILE LYS THR ILE ALA SER LYS THR GLN SER ILE SEQRES 80 A 1053 LYS LYS TYR SER THR ASP ILE LEU GLY ASN LEU TYR GLU SEQRES 81 A 1053 VAL LYS SER LYS LYS HIS PRO GLN ILE ILE LYS LYS GLY SEQRES 1 B 73 G G A A A U U A G G U G C SEQRES 2 B 73 G C U U G G C G U U U U A SEQRES 3 B 73 G U A C U C U G G A A A C SEQRES 4 B 73 A G A A U C U A C U A A A SEQRES 5 B 73 A C A A G G C A A A A U G SEQRES 6 B 73 C C G U G U U U SEQRES 1 C 28 DC DT DA DT DT DC DA DA DG DC DC DA DA SEQRES 2 C 28 DG DC DG DC DA DC DC DT DA DA DT DT DT SEQRES 3 C 28 DC DC SEQRES 1 D 8 DT DT DG DA DA DT DA DG SEQRES 1 E 100 MET LYS SER VAL LYS TYR ILE SER ASN MET SER LYS GLN SEQRES 2 E 100 GLU LYS GLY TYR ARG VAL TYR VAL ASN VAL VAL ASN GLU SEQRES 3 E 100 ASP THR ASP LYS GLY PHE LEU PHE PRO SER VAL PRO LYS SEQRES 4 E 100 GLU VAL ILE GLU ASN ASP LYS ILE ASP GLU LEU PHE ASN SEQRES 5 E 100 PHE GLU HIS HIS LYS PRO TYR VAL GLN LYS ALA LYS SER SEQRES 6 E 100 ARG TYR ASP LYS ASN GLY ILE GLY TYR LYS ILE VAL GLN SEQRES 7 E 100 LEU ASP GLU GLY PHE GLN LYS PHE ILE GLU LEU ASN LYS SEQRES 8 E 100 GLU LYS MET LYS GLU ASN LEU ASP TYR FORMUL 6 HOH *126(H2 O) HELIX 1 AA1 ASN A 40 TYR A 74 1 35 HELIX 2 AA2 ASN A 87 LEU A 96 1 10 HELIX 3 AA3 SER A 101 ARG A 115 1 15 HELIX 4 AA4 SER A 133 LEU A 145 1 13 HELIX 5 AA5 TYR A 149 GLY A 162 1 14 HELIX 6 AA6 GLY A 166 ARG A 170 5 5 HELIX 7 AA7 LYS A 172 LYS A 188 1 17 HELIX 8 AA8 ASP A 194 THR A 207 1 14 HELIX 9 AA9 ASP A 225 MET A 234 1 10 HELIX 10 AB1 ALA A 250 ASN A 264 1 15 HELIX 11 AB2 GLU A 276 VAL A 287 1 12 HELIX 12 AB3 THR A 295 LEU A 304 1 10 HELIX 13 AB4 ASN A 306 GLU A 308 5 3 HELIX 14 AB5 LEU A 326 THR A 336 1 11 HELIX 15 AB6 ARG A 338 GLU A 343 1 6 HELIX 16 AB7 ASN A 344 TYR A 358 1 15 HELIX 17 AB8 SER A 360 ASN A 370 1 11 HELIX 18 AB9 THR A 376 SER A 384 1 9 HELIX 19 AC1 SER A 396 THR A 410 1 15 HELIX 20 AC2 ASN A 413 LEU A 421 1 9 HELIX 21 AC3 PRO A 437 THR A 439 5 3 HELIX 22 AC4 LEU A 440 ILE A 445 1 6 HELIX 23 AC5 SER A 447 GLY A 469 1 23 HELIX 24 AC6 LYS A 485 MET A 494 1 10 HELIX 25 AC7 ASN A 498 THR A 512 1 15 HELIX 26 AC8 LYS A 514 ASN A 516 5 3 HELIX 27 AC9 ALA A 517 GLN A 530 1 14 HELIX 28 AD1 PRO A 542 ASN A 549 1 8 HELIX 29 AD2 GLN A 577 GLY A 584 1 8 HELIX 30 AD3 THR A 587 SER A 593 1 7 HELIX 31 AD4 SER A 600 ALA A 612 1 13 HELIX 32 AD5 SER A 619 LEU A 627 1 9 HELIX 33 AD6 ARG A 634 ASN A 645 1 12 HELIX 34 AD7 ARG A 650 ASN A 667 1 18 HELIX 35 AD8 GLY A 679 LYS A 687 1 9 HELIX 36 AD9 TYR A 698 LYS A 723 1 26 HELIX 37 AE1 GLU A 743 THR A 756 1 14 HELIX 38 AE2 PRO A 757 ASP A 765 1 9 HELIX 39 AE3 ASP A 814 SER A 823 1 10 HELIX 40 AE4 PRO A 824 LYS A 826 5 3 HELIX 41 AE5 LEU A 827 HIS A 832 1 6 HELIX 42 AE6 ASP A 833 TYR A 847 1 15 HELIX 43 AE7 ASN A 852 GLY A 862 1 11 HELIX 44 AE8 THR A 894 TYR A 897 5 4 HELIX 45 AE9 ASN A 943 LYS A 954 1 12 HELIX 46 AF1 THR A 1000 MET A 1008 1 9 HELIX 47 AF2 PRO E 38 GLU E 43 1 6 HELIX 48 AF3 LYS E 46 PHE E 53 5 8 HELIX 49 AF4 GLY E 82 ASN E 97 1 16 SHEET 1 AA1 6 LYS A 672 SER A 675 0 SHEET 2 AA1 6 ASP A 473 LEU A 478 1 N ILE A 474 O LYS A 672 SHEET 3 AA1 6 TYR A 5 ILE A 11 1 N LEU A 7 O ASP A 473 SHEET 4 AA1 6 SER A 15 ASP A 22 -1 O ILE A 21 N ILE A 6 SHEET 5 AA1 6 VAL A 28 LEU A 35 -1 O GLY A 32 N TYR A 18 SHEET 6 AA1 6 TYR A 769 HIS A 773 1 O SER A 772 N LEU A 35 SHEET 1 AA2 2 VAL A 266 ILE A 267 0 SHEET 2 AA2 2 ILE A 310 LYS A 311 -1 O LYS A 311 N VAL A 266 SHEET 1 AA3 2 TYR A 553 HIS A 557 0 SHEET 2 AA3 2 LYS A 572 LYS A 576 -1 O VAL A 575 N GLU A 554 SHEET 1 AA4 5 ILE A 880 LYS A 886 0 SHEET 2 AA4 5 THR A 799 LEU A 805 -1 N ILE A 801 O GLY A 884 SHEET 3 AA4 5 TYR A 789 LYS A 793 -1 N ARG A 792 O LEU A 800 SHEET 4 AA4 5 VAL A 904 LYS A 906 -1 O VAL A 905 N TYR A 789 SHEET 5 AA4 5 LEU A 891 ASP A 892 -1 N LEU A 891 O LYS A 906 SHEET 1 AA5 3 VAL A 922 LYS A 929 0 SHEET 2 AA5 3 PRO A 911 ASP A 919 -1 N ARG A 913 O VAL A 928 SHEET 3 AA5 3 GLU A 961 PHE A 966 -1 O ALA A 964 N VAL A 916 SHEET 1 AA6 3 VAL A 933 LYS A 935 0 SHEET 2 AA6 3 TYR A 940 VAL A 942 -1 O GLU A 941 N ILE A 934 SHEET 3 AA6 3 ILE A1050 LYS A1051 -1 O LYS A1051 N TYR A 940 SHEET 1 AA7 6 ILE A1016 THR A1019 0 SHEET 2 AA7 6 ARG A 991 ASN A 995 -1 N ILE A 992 O LYS A1018 SHEET 3 AA7 6 GLU A 977 ASN A 986 -1 N GLY A 983 O GLU A 993 SHEET 4 AA7 6 LEU A 971 ILE A 974 -1 N ILE A 972 O TYR A 979 SHEET 5 AA7 6 ILE A1027 THR A1032 -1 O LYS A1028 N LYS A 973 SHEET 6 AA7 6 LEU A1038 GLU A1040 -1 O TYR A1039 N SER A1031 SHEET 1 AA8 5 TYR E 59 LYS E 62 0 SHEET 2 AA8 5 THR E 28 VAL E 37 -1 N ASP E 29 O GLN E 61 SHEET 3 AA8 5 TYR E 17 VAL E 24 -1 N VAL E 21 O PHE E 32 SHEET 4 AA8 5 VAL E 4 LYS E 12 -1 N SER E 11 O ARG E 18 SHEET 5 AA8 5 VAL E 77 GLN E 78 -1 O VAL E 77 N ILE E 7 CRYST1 330.585 105.222 68.551 90.00 92.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003025 0.000000 0.000143 0.00000 SCALE2 0.000000 0.009504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014604 0.00000