HEADER DNA BINDING PROTEIN 11-APR-21 7ELK TITLE SOLUTION STRUCTURE OF TERFA DERIVED FROM DANIO RERIO COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERFA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH, BRACHYDANIO RERIO; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TERFA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TELOMERE BINDING PROTEIN, MYB DOMAIN, HUMAN TELOMERIC DNA, PLANT KEYWDS 2 TELOMERIC DNA, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.H.YUN,M.KIM,W.LEE REVDAT 2 15-MAY-24 7ELK 1 REMARK REVDAT 1 13-APR-22 7ELK 0 JRNL AUTH M.KIM,J.H.YUN,W.LEE JRNL TITL SOLUTION STRUCTURE OF TERFA DERIVED FROM DANIO RERIO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2.5 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ELK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021678. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] TERFA, 90% REMARK 210 H2O/10% D2O; 1 MM [U-15N] TERFA, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D-NOESY; 3D HCCH-TOCSY; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D 1H-15N NOESY; 2D 1H-15N HSQC REMARK 210 NH2 ONLY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 2.2.5, CYANA, XWINNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 516 -171.17 -69.76 REMARK 500 1 LYS A 518 113.19 -174.75 REMARK 500 1 MET A 524 92.86 -63.94 REMARK 500 1 VAL A 542 158.50 -45.01 REMARK 500 1 HIS A 544 50.90 -94.38 REMARK 500 1 PRO A 553 78.27 -69.79 REMARK 500 1 LYS A 573 48.66 31.49 REMARK 500 2 MET A 524 -73.61 -66.16 REMARK 500 2 VAL A 542 158.95 -44.93 REMARK 500 2 HIS A 544 48.84 -97.83 REMARK 500 2 PRO A 553 77.82 -69.72 REMARK 500 2 LYS A 573 48.49 31.52 REMARK 500 3 VAL A 542 153.92 -45.77 REMARK 500 3 HIS A 544 51.89 -93.41 REMARK 500 3 PRO A 553 78.24 -69.71 REMARK 500 3 ALA A 555 27.19 -148.86 REMARK 500 3 LYS A 573 49.88 31.00 REMARK 500 4 ALA A 517 76.43 -118.08 REMARK 500 4 LYS A 519 112.80 -169.18 REMARK 500 4 ARG A 522 52.19 -93.64 REMARK 500 4 LYS A 523 134.31 -177.08 REMARK 500 4 VAL A 542 159.16 -45.68 REMARK 500 4 HIS A 544 50.23 -103.08 REMARK 500 4 PRO A 553 76.92 -69.72 REMARK 500 4 LYS A 573 48.54 31.58 REMARK 500 5 PRO A 516 -170.90 -69.73 REMARK 500 5 LYS A 519 -73.67 -74.68 REMARK 500 5 ARG A 522 178.66 -59.11 REMARK 500 5 LYS A 523 -64.33 -105.74 REMARK 500 5 VAL A 542 155.44 -45.83 REMARK 500 5 HIS A 544 48.38 -97.38 REMARK 500 5 PRO A 553 77.80 -69.79 REMARK 500 5 LYS A 573 48.31 31.90 REMARK 500 6 LYS A 518 61.64 -114.67 REMARK 500 6 LYS A 519 -55.43 -120.69 REMARK 500 6 ARG A 522 103.20 -52.27 REMARK 500 6 VAL A 542 159.31 -45.46 REMARK 500 6 HIS A 544 48.54 -98.13 REMARK 500 6 PRO A 553 77.25 -69.73 REMARK 500 6 LYS A 573 48.21 31.72 REMARK 500 7 LYS A 519 52.64 -104.85 REMARK 500 7 LYS A 523 -173.32 -66.61 REMARK 500 7 VAL A 542 158.11 -44.75 REMARK 500 7 HIS A 544 50.64 -95.67 REMARK 500 7 LYS A 573 49.05 31.85 REMARK 500 8 PRO A 516 96.03 -69.76 REMARK 500 8 VAL A 542 159.34 -45.12 REMARK 500 8 HIS A 544 49.09 -97.12 REMARK 500 8 PRO A 553 77.02 -69.79 REMARK 500 8 LYS A 573 48.28 31.67 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36418 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF TERFA DERIVED FROM DANIO RERIO DBREF 7ELK A 513 575 UNP Q4QRH9 Q4QRH9_DANRE 512 574 SEQRES 1 A 63 SER THR ALA PRO ALA LYS LYS TYR THR ARG LYS MET TRP SEQRES 2 A 63 SER VAL GLN GLU SER GLU TRP LEU LYS GLN GLY VAL VAL SEQRES 3 A 63 ARG TYR GLY VAL GLY HIS TRP GLU ARG ILE ARG SER ALA SEQRES 4 A 63 PHE PRO PHE ALA GLY ARG THR ALA VAL ASN LEU LYS ASP SEQRES 5 A 63 ARG TRP ARG THR MET VAL LYS LEU LYS MET VAL HELIX 1 AA1 SER A 526 GLY A 541 1 16 HELIX 2 AA2 HIS A 544 SER A 550 1 7 HELIX 3 AA3 ALA A 559 LEU A 572 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1