HEADER RNA 22-APR-21 7EOH TITLE CRYSTAL STRUCTURE OF THE PEPPER APTAMER IN COMPLEX WITH HBC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPPER (49-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-TP(DELTAI); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 905931 KEYWDS FLUORESCENT RNA, APTAMER, HBC, RNA EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HUANG,A.M.REN REVDAT 3 29-NOV-23 7EOH 1 REMARK REVDAT 2 16-FEB-22 7EOH 1 JRNL REVDAT 1 24-NOV-21 7EOH 0 JRNL AUTH K.HUANG,X.CHEN,C.LI,Q.SONG,H.LI,L.ZHU,Y.YANG,A.REN JRNL TITL STRUCTURE-BASED INVESTIGATION OF FLUOROGENIC PEPPER APTAMER. JRNL REF NAT.CHEM.BIOL. V. 17 1289 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 34725509 JRNL DOI 10.1038/S41589-021-00884-6 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 17859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5610 - 3.1310 0.99 2538 142 0.1657 0.1965 REMARK 3 2 3.1310 - 2.4853 1.00 2482 151 0.2159 0.2460 REMARK 3 3 2.4853 - 2.1712 0.99 2479 132 0.2162 0.2820 REMARK 3 4 2.1712 - 1.9727 1.00 2494 127 0.2089 0.2625 REMARK 3 5 1.9727 - 1.8313 0.99 2435 135 0.2306 0.2407 REMARK 3 6 1.8313 - 1.7233 0.98 2428 116 0.2551 0.2951 REMARK 3 7 1.7233 - 1.6370 0.84 2088 112 0.2958 0.3228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17900 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.637 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7EOG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM CHLORIDE, 0.005 M REMARK 280 MAGNESIUM CHLORIDE, 0.025 M HEPES, PH 7.0, 1.25 M 1,6-HEXANEDIOL, REMARK 280 40% MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.32100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.51150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.32100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.51150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 288 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 202 O HOH A 209 1.98 REMARK 500 OP2 A A 6 O HOH A 201 2.08 REMARK 500 O HOH A 298 O HOH A 312 2.13 REMARK 500 O2' C A 49 O HOH A 202 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 205 O HOH A 205 2655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 2 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 G A 9 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 7 OP2 REMARK 620 2 U A 8 OP2 91.1 REMARK 620 3 HOH A 282 O 88.9 172.3 REMARK 620 4 HOH A 284 O 174.7 88.0 91.4 REMARK 620 5 HOH A 287 O 84.9 87.9 84.4 89.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 30 OP2 REMARK 620 2 HOH A 215 O 176.1 REMARK 620 3 HOH A 257 O 94.6 84.4 REMARK 620 4 HOH A 258 O 85.3 90.9 93.1 REMARK 620 5 HOH A 260 O 95.6 88.2 91.6 175.1 REMARK 620 6 HOH A 311 O 90.4 90.6 175.0 87.4 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 32 OP2 REMARK 620 2 HOH A 217 O 91.7 REMARK 620 3 HOH A 245 O 89.7 177.6 REMARK 620 4 HOH A 286 O 178.6 86.9 91.6 REMARK 620 5 HOH A 317 O 94.7 90.4 91.4 85.5 REMARK 620 6 HOH A 324 O 92.2 88.8 89.2 87.5 173.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 42 OP2 REMARK 620 2 HOH A 238 O 176.4 REMARK 620 3 HOH A 277 O 86.5 90.8 REMARK 620 4 HOH A 299 O 91.6 90.9 88.0 REMARK 620 5 HOH A 308 O 91.3 91.4 177.1 90.2 REMARK 620 6 HOH A 315 O 92.4 85.1 90.9 175.8 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 210 O REMARK 620 2 HOH A 261 O 95.2 REMARK 620 3 HOH A 276 O 91.3 82.3 REMARK 620 4 HOH A 303 O 77.6 91.6 166.9 REMARK 620 5 HOH A 341 O 85.1 179.7 97.6 88.5 REMARK 620 6 HOH A 344 O 174.9 84.1 93.5 97.4 95.6 REMARK 620 N 1 2 3 4 5 DBREF 7EOH A 1 49 PDB 7EOH 7EOH 1 49 SEQRES 1 A 49 GDP G C G C A C U G G C G C SEQRES 2 A 49 U G C G C C U U C G G G C SEQRES 3 A 49 G C C A A U C G U A G C G SEQRES 4 A 49 U G U C G G C G C C HET GDP A 1 28 HET J8F A 101 23 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM J8F 4-[(~{Z})-1-CYANO-2-[4-[2-HYDROXYETHYL(METHYL) HETNAM 2 J8F AMINO]PHENYL]ETHENYL]BENZENECARBONITRILE HETNAM MG MAGNESIUM ION FORMUL 1 GDP C10 H15 N5 O11 P2 FORMUL 2 J8F C19 H17 N3 O FORMUL 3 MG 5(MG 2+) FORMUL 8 HOH *144(H2 O) LINK O3' GDP A 1 P G A 2 1555 1555 1.57 LINK OP2 C A 7 MG MG A 105 1555 1555 2.01 LINK OP2 U A 8 MG MG A 105 1555 1555 1.97 LINK OP2 A A 30 MG MG A 104 1555 1555 2.00 LINK OP2 U A 32 MG MG A 102 1555 1555 2.05 LINK OP2 U A 42 MG MG A 103 1555 1555 1.99 LINK MG MG A 102 O HOH A 217 1555 1555 2.13 LINK MG MG A 102 O HOH A 245 1555 1555 2.13 LINK MG MG A 102 O HOH A 286 1555 1555 2.08 LINK MG MG A 102 O HOH A 317 1555 1555 2.06 LINK MG MG A 102 O HOH A 324 1555 1555 2.21 LINK MG MG A 103 O HOH A 238 1555 1555 1.98 LINK MG MG A 103 O HOH A 277 1555 1555 2.13 LINK MG MG A 103 O HOH A 299 1555 1555 2.08 LINK MG MG A 103 O HOH A 308 1555 1555 2.09 LINK MG MG A 103 O HOH A 315 1555 1555 2.11 LINK MG MG A 104 O HOH A 215 1555 1555 2.21 LINK MG MG A 104 O HOH A 257 1555 1555 2.15 LINK MG MG A 104 O HOH A 258 1555 1555 2.03 LINK MG MG A 104 O HOH A 260 1555 1555 2.10 LINK MG MG A 104 O HOH A 311 1555 1555 2.13 LINK MG MG A 105 O HOH A 282 1555 1555 2.09 LINK MG MG A 105 O HOH A 284 1555 1555 2.08 LINK MG MG A 105 O HOH A 287 1555 1555 2.17 LINK MG MG A 106 O HOH A 210 1555 2656 2.22 LINK MG MG A 106 O HOH A 261 1555 1555 2.18 LINK MG MG A 106 O HOH A 276 1555 1555 1.90 LINK MG MG A 106 O HOH A 303 1555 2656 2.11 LINK MG MG A 106 O HOH A 341 1555 2656 2.17 LINK MG MG A 106 O HOH A 344 1555 1555 2.01 CRYST1 92.642 35.023 58.127 90.00 127.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010794 0.000000 0.008397 0.00000 SCALE2 0.000000 0.028553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021796 0.00000 HETATM 1 PB GDP A 1 33.919 14.107 22.356 1.00 44.74 P HETATM 2 O1B GDP A 1 34.852 15.188 21.852 1.00 42.02 O HETATM 3 O2B GDP A 1 34.344 13.636 23.737 1.00 33.74 O HETATM 4 O3B GDP A 1 32.491 14.606 22.396 1.00 40.25 O HETATM 5 O3A GDP A 1 34.007 12.791 21.451 1.00 40.13 O HETATM 6 PA GDP A 1 34.450 12.662 19.906 1.00 37.82 P HETATM 7 O1A GDP A 1 33.558 13.465 18.992 1.00 37.41 O HETATM 8 O2A GDP A 1 35.920 12.900 19.665 1.00 37.97 O HETATM 9 O5' GDP A 1 34.119 11.099 19.821 1.00 31.76 O HETATM 10 C5' GDP A 1 35.110 10.132 20.140 1.00 29.72 C HETATM 11 C4' GDP A 1 34.400 8.811 20.382 1.00 28.79 C HETATM 12 O4' GDP A 1 33.503 8.940 21.481 1.00 31.33 O HETATM 13 C3' GDP A 1 33.504 8.411 19.214 1.00 28.25 C HETATM 14 O3' GDP A 1 34.231 7.752 18.178 1.00 28.25 O HETATM 15 C2' GDP A 1 32.501 7.512 19.901 1.00 28.52 C HETATM 16 O2' GDP A 1 33.103 6.248 20.180 1.00 26.95 O HETATM 17 C1' GDP A 1 32.321 8.180 21.241 1.00 26.30 C HETATM 18 N9 GDP A 1 31.185 9.116 21.239 1.00 24.87 N HETATM 19 C8 GDP A 1 31.280 10.457 21.223 1.00 28.07 C HETATM 20 N7 GDP A 1 30.057 11.039 21.225 1.00 28.42 N HETATM 21 C5 GDP A 1 29.153 10.046 21.240 1.00 23.61 C HETATM 22 C6 GDP A 1 27.682 9.963 21.258 1.00 25.70 C HETATM 23 O6 GDP A 1 26.977 10.993 21.260 1.00 26.42 O HETATM 24 N1 GDP A 1 27.136 8.743 21.271 1.00 24.43 N HETATM 25 C2 GDP A 1 27.875 7.622 21.263 1.00 22.41 C HETATM 26 N2 GDP A 1 27.229 6.439 21.273 1.00 22.85 N HETATM 27 N3 GDP A 1 29.234 7.612 21.254 1.00 21.59 N HETATM 28 C4 GDP A 1 29.901 8.783 21.248 1.00 22.10 C