HEADER VIRAL PROTEIN 05-MAY-21 7ER1 TITLE CRYSTAL STRUCTURE OF CAPSID P DOMAIN OF NOROVIRUS GI.3 VA115 COMPLEXED TITLE 2 WITH GALA1-3GALB1-4GLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID P DOMAIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS GI.3; SOURCE 3 ORGANISM_TAXID: 647516; SOURCE 4 VARIANT: VA115; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HISTO-BLOOD GROUP ANTIGENS, HUMAN NOROVIRUS, VIRAL RECEPTOR, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN REVDAT 4 29-NOV-23 7ER1 1 REMARK REVDAT 3 03-AUG-22 7ER1 1 JRNL REVDAT 2 29-JUN-22 7ER1 1 JRNL REVDAT 1 11-MAY-22 7ER1 0 JRNL AUTH C.WANG,H.KANG,M.TAN,J.CONG,D.SU,X.LI,Y.CHEN JRNL TITL STRUCTURAL INSIGHT INTO TERMINAL GALACTOSE RECOGNITION BY JRNL TITL 2 TWO NON-HBGA BINDING GI.3 NOROVIRUSES. JRNL REF J.VIROL. V. 96 42022 2022 JRNL REFN ESSN 1098-5514 JRNL PMID 35658530 JRNL DOI 10.1128/JVI.00420-22 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 49385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2549 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 751 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 1.13000 REMARK 3 B12 (A**2) : -0.70000 REMARK 3 B13 (A**2) : -3.22000 REMARK 3 B23 (A**2) : -0.67000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.417 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9499 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8350 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12987 ; 1.321 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19496 ; 1.149 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1199 ; 7.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 462 ;34.483 ;23.160 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1355 ;11.832 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.025 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1233 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10805 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1939 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 231 533 B 231 533 9006 0.100 0.050 REMARK 3 2 A 231 533 C 231 533 9118 0.070 0.050 REMARK 3 3 A 231 533 D 231 533 8934 0.090 0.050 REMARK 3 4 B 231 533 C 231 533 9085 0.080 0.050 REMARK 3 5 B 231 533 D 231 533 9008 0.080 0.050 REMARK 3 6 C 231 533 D 231 533 8921 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ER1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.16100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7ER0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE PH 6.4, 17% (W/V) REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 219 REMARK 465 PRO A 220 REMARK 465 LEU A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 PRO A 224 REMARK 465 GLU A 225 REMARK 465 PHE A 226 REMARK 465 GLN A 227 REMARK 465 LYS A 228 REMARK 465 THR A 229 REMARK 465 LYS A 230 REMARK 465 ALA A 534 REMARK 465 GLY A 535 REMARK 465 PRO A 536 REMARK 465 ALA A 537 REMARK 465 ARG A 538 REMARK 465 SER A 539 REMARK 465 LEU A 540 REMARK 465 GLY A 541 REMARK 465 ILE A 542 REMARK 465 ARG A 543 REMARK 465 ARG A 544 REMARK 465 SER A 545 REMARK 465 GLY B 219 REMARK 465 PRO B 220 REMARK 465 LEU B 221 REMARK 465 GLY B 222 REMARK 465 SER B 223 REMARK 465 PRO B 224 REMARK 465 GLU B 225 REMARK 465 PHE B 226 REMARK 465 GLN B 227 REMARK 465 LYS B 228 REMARK 465 THR B 229 REMARK 465 LYS B 230 REMARK 465 ALA B 534 REMARK 465 GLY B 535 REMARK 465 PRO B 536 REMARK 465 ALA B 537 REMARK 465 ARG B 538 REMARK 465 SER B 539 REMARK 465 LEU B 540 REMARK 465 GLY B 541 REMARK 465 ILE B 542 REMARK 465 ARG B 543 REMARK 465 ARG B 544 REMARK 465 SER B 545 REMARK 465 GLY C 219 REMARK 465 PRO C 220 REMARK 465 LEU C 221 REMARK 465 GLY C 222 REMARK 465 SER C 223 REMARK 465 PRO C 224 REMARK 465 GLU C 225 REMARK 465 PHE C 226 REMARK 465 GLN C 227 REMARK 465 LYS C 228 REMARK 465 THR C 229 REMARK 465 LYS C 230 REMARK 465 THR C 412 REMARK 465 GLU C 413 REMARK 465 ALA C 414 REMARK 465 ALA C 534 REMARK 465 GLY C 535 REMARK 465 PRO C 536 REMARK 465 ALA C 537 REMARK 465 ARG C 538 REMARK 465 SER C 539 REMARK 465 LEU C 540 REMARK 465 GLY C 541 REMARK 465 ILE C 542 REMARK 465 ARG C 543 REMARK 465 ARG C 544 REMARK 465 SER C 545 REMARK 465 GLY D 219 REMARK 465 PRO D 220 REMARK 465 LEU D 221 REMARK 465 GLY D 222 REMARK 465 SER D 223 REMARK 465 PRO D 224 REMARK 465 GLU D 225 REMARK 465 PHE D 226 REMARK 465 GLN D 227 REMARK 465 LYS D 228 REMARK 465 THR D 229 REMARK 465 LYS D 230 REMARK 465 LEU D 411 REMARK 465 THR D 412 REMARK 465 GLU D 413 REMARK 465 ALA D 534 REMARK 465 GLY D 535 REMARK 465 PRO D 536 REMARK 465 ALA D 537 REMARK 465 ARG D 538 REMARK 465 SER D 539 REMARK 465 LEU D 540 REMARK 465 GLY D 541 REMARK 465 ILE D 542 REMARK 465 ARG D 543 REMARK 465 ARG D 544 REMARK 465 SER D 545 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 342 136.92 -39.41 REMARK 500 GLU A 357 -160.93 -118.83 REMARK 500 GLN A 416 52.19 -95.15 REMARK 500 VAL A 519 -60.36 -99.18 REMARK 500 ASN B 299 109.29 -57.87 REMARK 500 GLU B 357 -160.64 -118.98 REMARK 500 SER B 502 -135.22 45.28 REMARK 500 SER B 503 58.09 -95.51 REMARK 500 GLU C 318 -36.06 -142.85 REMARK 500 GLU C 357 -160.78 -118.92 REMARK 500 SER C 502 -131.53 46.50 REMARK 500 SER C 503 54.86 -93.23 REMARK 500 VAL C 519 -60.65 -99.63 REMARK 500 GLU D 357 -160.15 -118.08 REMARK 500 PRO D 438 99.45 -64.54 REMARK 500 VAL D 519 -60.88 -99.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ER1 A 219 545 PDB 7ER1 7ER1 219 545 DBREF 7ER1 B 219 545 PDB 7ER1 7ER1 219 545 DBREF 7ER1 C 219 545 PDB 7ER1 7ER1 219 545 DBREF 7ER1 D 219 545 PDB 7ER1 7ER1 219 545 SEQRES 1 A 327 GLY PRO LEU GLY SER PRO GLU PHE GLN LYS THR LYS PRO SEQRES 2 A 327 PHE SER VAL PRO ASN LEU PRO LEU ASN THR LEU SER ASN SEQRES 3 A 327 SER ARG VAL PRO SER LEU ILE ARG SER MET MET VAL SER SEQRES 4 A 327 ARG ASP HIS GLY GLN MET VAL GLN PHE GLN ASN GLY ARG SEQRES 5 A 327 VAL THR LEU ASP GLY GLN LEU GLN GLY THR THR PRO THR SEQRES 6 A 327 SER ALA SER GLN LEU CYS LYS ILE ARG GLY SER VAL PHE SEQRES 7 A 327 HIS ALA ASN GLY GLY ASN GLY TYR ASN LEU THR GLU LEU SEQRES 8 A 327 ASP GLY SER PRO TYR HIS ALA PHE GLU SER PRO ALA PRO SEQRES 9 A 327 ILE GLY PHE PRO ASP LEU GLY GLU CYS ASP TRP HIS MET SEQRES 10 A 327 GLU ALA SER PRO THR THR GLN PHE ASP THR GLY ASP VAL SEQRES 11 A 327 ILE LYS GLN ILE ASN VAL LYS GLN GLU ALA ALA PHE ALA SEQRES 12 A 327 PRO HIS LEU GLY THR ILE GLN ALA ASP GLY LEU SER ASP SEQRES 13 A 327 VAL SER VAL ASN THR ASN MET ILE ALA LYS LEU GLY TRP SEQRES 14 A 327 VAL SER PRO ALA SER ASP GLY HIS ARG GLY ASN VAL ASP SEQRES 15 A 327 PRO TRP VAL ILE PRO ARG TYR GLY SER THR LEU THR GLU SEQRES 16 A 327 ALA ALA GLN LEU ALA PRO PRO ILE TYR PRO PRO GLY PHE SEQRES 17 A 327 GLY GLU ALA ILE VAL PHE PHE MET SER ASP PHE PRO ILE SEQRES 18 A 327 ALA HIS GLY ALA ASN GLY LEU SER VAL PRO CYS THR ILE SEQRES 19 A 327 PRO GLN GLU PHE VAL THR HIS PHE VAL ASN GLU GLN ALA SEQRES 20 A 327 PRO THR ARG GLY GLU ALA ALA LEU LEU HIS TYR LEU ASP SEQRES 21 A 327 PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU TYR SEQRES 22 A 327 PRO GLU GLY PHE MET THR CYS VAL PRO ASN SER SER GLY SEQRES 23 A 327 THR GLY PRO GLN THR LEU PRO ILE ASN GLY VAL PHE VAL SEQRES 24 A 327 PHE VAL SER TRP VAL SER ARG PHE TYR GLN LEU LYS PRO SEQRES 25 A 327 VAL GLY THR ALA GLY PRO ALA ARG SER LEU GLY ILE ARG SEQRES 26 A 327 ARG SER SEQRES 1 B 327 GLY PRO LEU GLY SER PRO GLU PHE GLN LYS THR LYS PRO SEQRES 2 B 327 PHE SER VAL PRO ASN LEU PRO LEU ASN THR LEU SER ASN SEQRES 3 B 327 SER ARG VAL PRO SER LEU ILE ARG SER MET MET VAL SER SEQRES 4 B 327 ARG ASP HIS GLY GLN MET VAL GLN PHE GLN ASN GLY ARG SEQRES 5 B 327 VAL THR LEU ASP GLY GLN LEU GLN GLY THR THR PRO THR SEQRES 6 B 327 SER ALA SER GLN LEU CYS LYS ILE ARG GLY SER VAL PHE SEQRES 7 B 327 HIS ALA ASN GLY GLY ASN GLY TYR ASN LEU THR GLU LEU SEQRES 8 B 327 ASP GLY SER PRO TYR HIS ALA PHE GLU SER PRO ALA PRO SEQRES 9 B 327 ILE GLY PHE PRO ASP LEU GLY GLU CYS ASP TRP HIS MET SEQRES 10 B 327 GLU ALA SER PRO THR THR GLN PHE ASP THR GLY ASP VAL SEQRES 11 B 327 ILE LYS GLN ILE ASN VAL LYS GLN GLU ALA ALA PHE ALA SEQRES 12 B 327 PRO HIS LEU GLY THR ILE GLN ALA ASP GLY LEU SER ASP SEQRES 13 B 327 VAL SER VAL ASN THR ASN MET ILE ALA LYS LEU GLY TRP SEQRES 14 B 327 VAL SER PRO ALA SER ASP GLY HIS ARG GLY ASN VAL ASP SEQRES 15 B 327 PRO TRP VAL ILE PRO ARG TYR GLY SER THR LEU THR GLU SEQRES 16 B 327 ALA ALA GLN LEU ALA PRO PRO ILE TYR PRO PRO GLY PHE SEQRES 17 B 327 GLY GLU ALA ILE VAL PHE PHE MET SER ASP PHE PRO ILE SEQRES 18 B 327 ALA HIS GLY ALA ASN GLY LEU SER VAL PRO CYS THR ILE SEQRES 19 B 327 PRO GLN GLU PHE VAL THR HIS PHE VAL ASN GLU GLN ALA SEQRES 20 B 327 PRO THR ARG GLY GLU ALA ALA LEU LEU HIS TYR LEU ASP SEQRES 21 B 327 PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU TYR SEQRES 22 B 327 PRO GLU GLY PHE MET THR CYS VAL PRO ASN SER SER GLY SEQRES 23 B 327 THR GLY PRO GLN THR LEU PRO ILE ASN GLY VAL PHE VAL SEQRES 24 B 327 PHE VAL SER TRP VAL SER ARG PHE TYR GLN LEU LYS PRO SEQRES 25 B 327 VAL GLY THR ALA GLY PRO ALA ARG SER LEU GLY ILE ARG SEQRES 26 B 327 ARG SER SEQRES 1 C 327 GLY PRO LEU GLY SER PRO GLU PHE GLN LYS THR LYS PRO SEQRES 2 C 327 PHE SER VAL PRO ASN LEU PRO LEU ASN THR LEU SER ASN SEQRES 3 C 327 SER ARG VAL PRO SER LEU ILE ARG SER MET MET VAL SER SEQRES 4 C 327 ARG ASP HIS GLY GLN MET VAL GLN PHE GLN ASN GLY ARG SEQRES 5 C 327 VAL THR LEU ASP GLY GLN LEU GLN GLY THR THR PRO THR SEQRES 6 C 327 SER ALA SER GLN LEU CYS LYS ILE ARG GLY SER VAL PHE SEQRES 7 C 327 HIS ALA ASN GLY GLY ASN GLY TYR ASN LEU THR GLU LEU SEQRES 8 C 327 ASP GLY SER PRO TYR HIS ALA PHE GLU SER PRO ALA PRO SEQRES 9 C 327 ILE GLY PHE PRO ASP LEU GLY GLU CYS ASP TRP HIS MET SEQRES 10 C 327 GLU ALA SER PRO THR THR GLN PHE ASP THR GLY ASP VAL SEQRES 11 C 327 ILE LYS GLN ILE ASN VAL LYS GLN GLU ALA ALA PHE ALA SEQRES 12 C 327 PRO HIS LEU GLY THR ILE GLN ALA ASP GLY LEU SER ASP SEQRES 13 C 327 VAL SER VAL ASN THR ASN MET ILE ALA LYS LEU GLY TRP SEQRES 14 C 327 VAL SER PRO ALA SER ASP GLY HIS ARG GLY ASN VAL ASP SEQRES 15 C 327 PRO TRP VAL ILE PRO ARG TYR GLY SER THR LEU THR GLU SEQRES 16 C 327 ALA ALA GLN LEU ALA PRO PRO ILE TYR PRO PRO GLY PHE SEQRES 17 C 327 GLY GLU ALA ILE VAL PHE PHE MET SER ASP PHE PRO ILE SEQRES 18 C 327 ALA HIS GLY ALA ASN GLY LEU SER VAL PRO CYS THR ILE SEQRES 19 C 327 PRO GLN GLU PHE VAL THR HIS PHE VAL ASN GLU GLN ALA SEQRES 20 C 327 PRO THR ARG GLY GLU ALA ALA LEU LEU HIS TYR LEU ASP SEQRES 21 C 327 PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU TYR SEQRES 22 C 327 PRO GLU GLY PHE MET THR CYS VAL PRO ASN SER SER GLY SEQRES 23 C 327 THR GLY PRO GLN THR LEU PRO ILE ASN GLY VAL PHE VAL SEQRES 24 C 327 PHE VAL SER TRP VAL SER ARG PHE TYR GLN LEU LYS PRO SEQRES 25 C 327 VAL GLY THR ALA GLY PRO ALA ARG SER LEU GLY ILE ARG SEQRES 26 C 327 ARG SER SEQRES 1 D 327 GLY PRO LEU GLY SER PRO GLU PHE GLN LYS THR LYS PRO SEQRES 2 D 327 PHE SER VAL PRO ASN LEU PRO LEU ASN THR LEU SER ASN SEQRES 3 D 327 SER ARG VAL PRO SER LEU ILE ARG SER MET MET VAL SER SEQRES 4 D 327 ARG ASP HIS GLY GLN MET VAL GLN PHE GLN ASN GLY ARG SEQRES 5 D 327 VAL THR LEU ASP GLY GLN LEU GLN GLY THR THR PRO THR SEQRES 6 D 327 SER ALA SER GLN LEU CYS LYS ILE ARG GLY SER VAL PHE SEQRES 7 D 327 HIS ALA ASN GLY GLY ASN GLY TYR ASN LEU THR GLU LEU SEQRES 8 D 327 ASP GLY SER PRO TYR HIS ALA PHE GLU SER PRO ALA PRO SEQRES 9 D 327 ILE GLY PHE PRO ASP LEU GLY GLU CYS ASP TRP HIS MET SEQRES 10 D 327 GLU ALA SER PRO THR THR GLN PHE ASP THR GLY ASP VAL SEQRES 11 D 327 ILE LYS GLN ILE ASN VAL LYS GLN GLU ALA ALA PHE ALA SEQRES 12 D 327 PRO HIS LEU GLY THR ILE GLN ALA ASP GLY LEU SER ASP SEQRES 13 D 327 VAL SER VAL ASN THR ASN MET ILE ALA LYS LEU GLY TRP SEQRES 14 D 327 VAL SER PRO ALA SER ASP GLY HIS ARG GLY ASN VAL ASP SEQRES 15 D 327 PRO TRP VAL ILE PRO ARG TYR GLY SER THR LEU THR GLU SEQRES 16 D 327 ALA ALA GLN LEU ALA PRO PRO ILE TYR PRO PRO GLY PHE SEQRES 17 D 327 GLY GLU ALA ILE VAL PHE PHE MET SER ASP PHE PRO ILE SEQRES 18 D 327 ALA HIS GLY ALA ASN GLY LEU SER VAL PRO CYS THR ILE SEQRES 19 D 327 PRO GLN GLU PHE VAL THR HIS PHE VAL ASN GLU GLN ALA SEQRES 20 D 327 PRO THR ARG GLY GLU ALA ALA LEU LEU HIS TYR LEU ASP SEQRES 21 D 327 PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU TYR SEQRES 22 D 327 PRO GLU GLY PHE MET THR CYS VAL PRO ASN SER SER GLY SEQRES 23 D 327 THR GLY PRO GLN THR LEU PRO ILE ASN GLY VAL PHE VAL SEQRES 24 D 327 PHE VAL SER TRP VAL SER ARG PHE TYR GLN LEU LYS PRO SEQRES 25 D 327 VAL GLY THR ALA GLY PRO ALA ARG SER LEU GLY ILE ARG SEQRES 26 D 327 ARG SER HET GAL E 1 12 HET GLA E 2 11 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 5 GAL C6 H12 O6 FORMUL 5 GLA C6 H12 O6 FORMUL 6 HOH *751(H2 O) HELIX 1 AA1 PRO A 238 LEU A 242 5 5 HELIX 2 AA2 SER A 284 LEU A 288 5 5 HELIX 3 AA3 THR A 345 ILE A 349 5 5 HELIX 4 AA4 ALA A 361 LEU A 364 5 4 HELIX 5 AA5 PRO A 453 GLN A 464 1 12 HELIX 6 AA6 THR A 505 LEU A 510 5 6 HELIX 7 AA7 PRO B 238 LEU B 242 5 5 HELIX 8 AA8 SER B 284 LEU B 288 5 5 HELIX 9 AA9 THR B 345 ILE B 349 5 5 HELIX 10 AB1 ALA B 361 LEU B 364 5 4 HELIX 11 AB2 PRO B 453 GLN B 464 1 12 HELIX 12 AB3 THR B 505 LEU B 510 5 6 HELIX 13 AB4 PRO C 238 LEU C 242 5 5 HELIX 14 AB5 SER C 284 LEU C 288 5 5 HELIX 15 AB6 THR C 345 ILE C 349 5 5 HELIX 16 AB7 ALA C 361 LEU C 364 5 4 HELIX 17 AB8 PRO C 453 GLN C 464 1 12 HELIX 18 AB9 THR C 505 LEU C 510 5 6 HELIX 19 AC1 PRO D 238 LEU D 242 5 5 HELIX 20 AC2 SER D 284 LEU D 288 5 5 HELIX 21 AC3 THR D 345 ILE D 349 5 5 HELIX 22 AC4 ALA D 361 LEU D 364 5 4 HELIX 23 AC5 PRO D 453 GLN D 464 1 12 HELIX 24 AC6 THR D 505 LEU D 510 5 6 SHEET 1 AA1 3 SER A 253 MET A 255 0 SHEET 2 AA1 3 PHE A 432 ASP A 436 -1 O PHE A 432 N MET A 255 SHEET 3 AA1 3 SER A 447 CYS A 450 -1 O CYS A 450 N PHE A 433 SHEET 1 AA2 6 LYS A 350 VAL A 354 0 SHEET 2 AA2 6 ASP A 332 PRO A 339 -1 N ALA A 337 O LYS A 350 SHEET 3 AA2 6 ASN A 380 SER A 389 -1 O GLY A 386 N HIS A 334 SHEET 4 AA2 6 LYS A 290 ALA A 298 -1 N ILE A 291 O ALA A 383 SHEET 5 AA2 6 GLY A 301 THR A 307 -1 O GLY A 301 N ALA A 298 SHEET 6 AA2 6 THR A 366 GLN A 368 -1 O ILE A 367 N TYR A 304 SHEET 1 AA3 5 ALA A 429 ILE A 430 0 SHEET 2 AA3 5 MET A 496 CYS A 498 -1 O CYS A 498 N ALA A 429 SHEET 3 AA3 5 ARG A 483 LEU A 490 -1 N LYS A 489 O THR A 497 SHEET 4 AA3 5 ALA A 471 ASP A 478 -1 N ALA A 472 O LEU A 490 SHEET 5 AA3 5 VAL A 515 VAL A 522 -1 O VAL A 515 N LEU A 477 SHEET 1 AA4 3 SER B 253 MET B 255 0 SHEET 2 AA4 3 PHE B 432 ASP B 436 -1 O PHE B 432 N MET B 255 SHEET 3 AA4 3 SER B 447 CYS B 450 -1 O CYS B 450 N PHE B 433 SHEET 1 AA5 6 LYS B 350 VAL B 354 0 SHEET 2 AA5 6 CYS B 331 PRO B 339 -1 N MET B 335 O ILE B 352 SHEET 3 AA5 6 ASN B 380 PRO B 390 -1 O GLY B 386 N HIS B 334 SHEET 4 AA5 6 LYS B 290 ALA B 298 -1 N ILE B 291 O ALA B 383 SHEET 5 AA5 6 GLY B 301 THR B 307 -1 O GLY B 301 N ALA B 298 SHEET 6 AA5 6 THR B 366 GLN B 368 -1 O ILE B 367 N TYR B 304 SHEET 1 AA6 5 ALA B 429 ILE B 430 0 SHEET 2 AA6 5 MET B 496 CYS B 498 -1 O CYS B 498 N ALA B 429 SHEET 3 AA6 5 ASN B 484 LEU B 490 -1 N LYS B 489 O THR B 497 SHEET 4 AA6 5 ALA B 471 LEU B 477 -1 N TYR B 476 O LEU B 485 SHEET 5 AA6 5 VAL B 515 VAL B 522 -1 O VAL B 515 N LEU B 477 SHEET 1 AA7 3 SER C 253 MET C 255 0 SHEET 2 AA7 3 PHE C 432 ASP C 436 -1 O PHE C 432 N MET C 255 SHEET 3 AA7 3 SER C 447 CYS C 450 -1 O CYS C 450 N PHE C 433 SHEET 1 AA8 6 LYS C 350 VAL C 354 0 SHEET 2 AA8 6 CYS C 331 PRO C 339 -1 N ALA C 337 O LYS C 350 SHEET 3 AA8 6 ASN C 380 PRO C 390 -1 O SER C 389 N ASP C 332 SHEET 4 AA8 6 LYS C 290 ALA C 298 -1 N ILE C 291 O ALA C 383 SHEET 5 AA8 6 GLY C 301 THR C 307 -1 O GLY C 301 N ALA C 298 SHEET 6 AA8 6 THR C 366 GLN C 368 -1 O ILE C 367 N TYR C 304 SHEET 1 AA9 5 ALA C 429 ILE C 430 0 SHEET 2 AA9 5 MET C 496 CYS C 498 -1 O CYS C 498 N ALA C 429 SHEET 3 AA9 5 ARG C 483 LEU C 490 -1 N LYS C 489 O THR C 497 SHEET 4 AA9 5 ALA C 471 ASP C 478 -1 N ALA C 472 O LEU C 490 SHEET 5 AA9 5 VAL C 515 VAL C 522 -1 O VAL C 515 N LEU C 477 SHEET 1 AB1 3 SER D 253 MET D 255 0 SHEET 2 AB1 3 PHE D 432 ASP D 436 -1 O PHE D 432 N MET D 255 SHEET 3 AB1 3 SER D 447 CYS D 450 -1 O CYS D 450 N PHE D 433 SHEET 1 AB2 6 LYS D 350 VAL D 354 0 SHEET 2 AB2 6 ASP D 332 PRO D 339 -1 N ALA D 337 O LYS D 350 SHEET 3 AB2 6 ASN D 380 SER D 389 -1 O GLY D 386 N HIS D 334 SHEET 4 AB2 6 LYS D 290 ALA D 298 -1 N ILE D 291 O ALA D 383 SHEET 5 AB2 6 GLY D 301 THR D 307 -1 O ASN D 305 N SER D 294 SHEET 6 AB2 6 THR D 366 GLN D 368 -1 O ILE D 367 N TYR D 304 SHEET 1 AB3 5 ALA D 429 ILE D 430 0 SHEET 2 AB3 5 MET D 496 CYS D 498 -1 O CYS D 498 N ALA D 429 SHEET 3 AB3 5 ASN D 484 LEU D 490 -1 N LYS D 489 O THR D 497 SHEET 4 AB3 5 ALA D 471 LEU D 477 -1 N TYR D 476 O LEU D 485 SHEET 5 AB3 5 VAL D 515 VAL D 522 -1 O VAL D 515 N LEU D 477 LINK O3 GAL E 1 C1 GLA E 2 1555 1555 1.45 CRYST1 57.290 59.637 91.419 102.28 96.72 109.77 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017455 0.006275 0.003893 0.00000 SCALE2 0.000000 0.017819 0.004994 0.00000 SCALE3 0.000000 0.000000 0.011439 0.00000