HEADER OXIDOREDUCTASE 06-MAY-21 7ER7 TITLE CRYSTAL STRUCTURE OF HYMAN BILIVERDIN IX-BETA REDUCTASE B WITH TITLE 2 TAMIBAROTENE (A80) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN REDUCTASE (NADPH); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FR,BILIVERDIN REDUCTASE B,BVR-B,BILIVERDIN-IX BETA- COMPND 5 REDUCTASE,GREEN HEME-BINDING PROTEIN,GHBP,NADPH-DEPENDENT DIAPHORASE, COMPND 6 NADPH-FLAVIN REDUCTASE,FLR; COMPND 7 EC: 1.5.1.30,1.3.1.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BLVRB, FLR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLATELETS, BILIVERDIN REDUCTASE B, BLVRB, INHIBITORS, NADP, KEYWDS 2 THROMBOVYTOPENIA, TAMIBAROTENE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.GRIESINGER,D.LEE,K.S.RYU,M.KIM,J.H.HA REVDAT 3 29-NOV-23 7ER7 1 REMARK REVDAT 2 23-FEB-22 7ER7 1 JRNL REVDAT 1 19-JAN-22 7ER7 0 JRNL AUTH M.KIM,J.H.HA,J.CHOI,B.R.KIM,V.GAPSYS,K.O.LEE,J.G.JEE, JRNL AUTH 2 K.S.CHAKRABARTI,B.L.DE GROOT,C.GRIESINGER,K.S.RYU,D.LEE JRNL TITL REPOSITIONING FOOD AND DRUG ADMINISTRATION-APPROVED DRUGS JRNL TITL 2 FOR INHIBITING BILIVERDIN IX BETA REDUCTASE B AS A NOVEL JRNL TITL 3 THROMBOCYTOPENIA THERAPEUTIC TARGET. JRNL REF J.MED.CHEM. V. 65 2548 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34957824 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01664 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 45239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.410 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.0900 - 3.2500 0.99 3167 147 0.1546 0.1795 REMARK 3 2 3.2500 - 2.8400 0.99 3136 144 0.1750 0.2302 REMARK 3 3 2.8400 - 2.5800 0.99 3145 145 0.1837 0.2444 REMARK 3 4 2.5800 - 2.3900 0.99 3106 143 0.1785 0.1987 REMARK 3 5 2.3900 - 2.2500 0.98 3047 140 0.1709 0.2084 REMARK 3 6 2.2500 - 2.1400 1.00 3116 145 0.1721 0.1979 REMARK 3 7 2.1400 - 2.0500 1.00 3108 143 0.1793 0.2266 REMARK 3 8 2.0500 - 1.9700 1.00 3091 143 0.1918 0.2093 REMARK 3 9 1.9700 - 1.9000 1.00 3085 142 0.1889 0.2290 REMARK 3 10 1.9000 - 1.8400 0.96 2951 136 0.2011 0.2490 REMARK 3 11 1.8400 - 1.7900 0.98 3057 142 0.2120 0.2367 REMARK 3 12 1.7900 - 1.7400 0.99 3041 139 0.2246 0.2704 REMARK 3 13 1.7400 - 1.7000 0.96 2975 138 0.2451 0.2844 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.173 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.599 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3364 REMARK 3 ANGLE : 0.928 4618 REMARK 3 CHIRALITY : 0.054 535 REMARK 3 PLANARITY : 0.006 578 REMARK 3 DIHEDRAL : 11.398 2660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3732 5.9237 -15.8749 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.1090 REMARK 3 T33: 0.0643 T12: -0.0107 REMARK 3 T13: 0.0141 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0102 L22: 0.0046 REMARK 3 L33: 0.0020 L12: 0.0051 REMARK 3 L13: 0.0040 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0526 S13: 0.0319 REMARK 3 S21: 0.0096 S22: 0.0296 S23: 0.0051 REMARK 3 S31: -0.0192 S32: -0.0020 S33: 0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3602 12.3802 -9.5431 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.0891 REMARK 3 T33: 0.1329 T12: -0.0071 REMARK 3 T13: 0.0063 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: 0.0483 REMARK 3 L33: 0.0099 L12: -0.0119 REMARK 3 L13: 0.0006 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0610 S13: 0.1080 REMARK 3 S21: -0.0130 S22: 0.0286 S23: 0.0139 REMARK 3 S31: -0.0653 S32: -0.0003 S33: -0.0081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8048 7.1031 -7.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0926 REMARK 3 T33: 0.0924 T12: -0.0006 REMARK 3 T13: 0.0031 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0582 L22: 0.0264 REMARK 3 L33: 0.0415 L12: 0.0300 REMARK 3 L13: -0.0423 L23: -0.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.0705 S13: 0.1537 REMARK 3 S21: 0.0177 S22: 0.0574 S23: 0.0896 REMARK 3 S31: -0.0186 S32: -0.0230 S33: 0.0777 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7750 -4.5632 -8.4458 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.1005 REMARK 3 T33: 0.0502 T12: -0.0066 REMARK 3 T13: 0.0022 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 0.0081 REMARK 3 L33: 0.0010 L12: -0.0004 REMARK 3 L13: 0.0011 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.0559 S13: -0.0017 REMARK 3 S21: -0.0276 S22: 0.0216 S23: 0.0173 REMARK 3 S31: 0.0139 S32: -0.0091 S33: 0.0191 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2370 -5.2878 2.2681 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1106 REMARK 3 T33: -0.0781 T12: 0.0214 REMARK 3 T13: -0.0022 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.1119 L22: 0.0556 REMARK 3 L33: 0.0241 L12: -0.0108 REMARK 3 L13: 0.0120 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: -0.1616 S13: -0.0732 REMARK 3 S21: -0.0401 S22: 0.0341 S23: -0.0522 REMARK 3 S31: 0.0143 S32: 0.0364 S33: 0.0426 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1622 2.2967 1.3239 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1198 REMARK 3 T33: 0.1566 T12: -0.0126 REMARK 3 T13: -0.0045 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.0118 L22: 0.0108 REMARK 3 L33: 0.0271 L12: -0.0021 REMARK 3 L13: 0.0122 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.1003 S13: 0.0371 REMARK 3 S21: 0.0046 S22: 0.0042 S23: 0.0135 REMARK 3 S31: 0.0060 S32: 0.0010 S33: 0.0018 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2876 1.8894 -4.5183 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0795 REMARK 3 T33: 0.0881 T12: -0.0104 REMARK 3 T13: 0.0041 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.0118 L22: 0.0434 REMARK 3 L33: 0.0323 L12: -0.0142 REMARK 3 L13: -0.0002 L23: -0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0658 S13: 0.0876 REMARK 3 S21: -0.0307 S22: -0.0214 S23: -0.0935 REMARK 3 S31: 0.0083 S32: 0.0672 S33: -0.0433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0454 -32.7535 3.3162 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.0328 REMARK 3 T33: 0.4549 T12: 0.0009 REMARK 3 T13: 0.0452 T23: 0.1642 REMARK 3 L TENSOR REMARK 3 L11: 0.0062 L22: 0.0132 REMARK 3 L33: 0.0062 L12: -0.0002 REMARK 3 L13: -0.0012 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0062 S13: 0.0124 REMARK 3 S21: 0.0182 S22: -0.0017 S23: -0.0012 REMARK 3 S31: -0.0210 S32: 0.0169 S33: 0.0021 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.9766 -32.2557 -1.8035 REMARK 3 T TENSOR REMARK 3 T11: 0.1090 T22: -0.0619 REMARK 3 T33: 0.6254 T12: 0.1115 REMARK 3 T13: -0.0348 T23: 0.2778 REMARK 3 L TENSOR REMARK 3 L11: 0.0173 L22: 0.0361 REMARK 3 L33: 0.0131 L12: -0.0247 REMARK 3 L13: -0.0150 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.0281 S13: -0.0171 REMARK 3 S21: -0.1038 S22: -0.0383 S23: 0.1096 REMARK 3 S31: -0.0187 S32: -0.0272 S33: -0.0381 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4699 -12.8354 3.0112 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.1768 REMARK 3 T33: 0.2039 T12: 0.0200 REMARK 3 T13: 0.0337 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: 0.0095 REMARK 3 L33: 0.0016 L12: -0.0020 REMARK 3 L13: 0.0014 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0062 S13: -0.0270 REMARK 3 S21: -0.0152 S22: -0.0019 S23: -0.0023 REMARK 3 S31: 0.0052 S32: 0.0116 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.9103 -18.4296 12.3565 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1498 REMARK 3 T33: 0.2969 T12: 0.0337 REMARK 3 T13: 0.1149 T23: 0.2362 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: 0.0530 REMARK 3 L33: 0.2584 L12: -0.0077 REMARK 3 L13: 0.0001 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: -0.1267 S13: -0.2408 REMARK 3 S21: 0.0941 S22: -0.0067 S23: 0.0896 REMARK 3 S31: -0.0311 S32: 0.0615 S33: -0.0883 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2702 -21.6062 14.1149 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.1511 REMARK 3 T33: 0.2288 T12: 0.0077 REMARK 3 T13: 0.1055 T23: 0.1874 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: 0.0748 REMARK 3 L33: 0.0794 L12: 0.0211 REMARK 3 L13: -0.0264 L23: -0.0602 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0655 S13: -0.0682 REMARK 3 S21: 0.0296 S22: 0.0876 S23: 0.0442 REMARK 3 S31: -0.0425 S32: 0.0014 S33: 0.1074 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3531 -26.2587 13.6651 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.2283 REMARK 3 T33: 0.3718 T12: 0.0158 REMARK 3 T13: 0.0469 T23: 0.1424 REMARK 3 L TENSOR REMARK 3 L11: 0.0364 L22: 0.0592 REMARK 3 L33: 0.0436 L12: 0.0434 REMARK 3 L13: 0.0085 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0372 S13: -0.0796 REMARK 3 S21: 0.0022 S22: 0.0696 S23: -0.0302 REMARK 3 S31: -0.0053 S32: 0.0342 S33: 0.0987 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ER7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 1.16_3549 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.698 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09526 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40640 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HE5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M-2.0M AMMONIUM SULFATE, 0.1M BIS REMARK 280 -TRIS (PH 6.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.12650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.92950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.12650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.92950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 593 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 667 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 609 O HOH A 649 1.76 REMARK 500 O HOH A 638 O HOH A 663 2.10 REMARK 500 O HOH A 666 O HOH A 670 2.14 REMARK 500 O HOH B 529 O HOH B 597 2.16 REMARK 500 O HOH A 537 O HOH A 645 2.18 REMARK 500 O HOH A 648 O HOH A 665 2.18 REMARK 500 NZ LYS A 137 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 4 CA - CB - CG ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -127.34 55.28 REMARK 500 THR A 110 -104.01 -110.60 REMARK 500 PRO A 152 -148.21 -81.21 REMARK 500 ALA B 2 83.40 -157.05 REMARK 500 THR B 77 32.84 -142.06 REMARK 500 ARG B 78 1.71 -65.45 REMARK 500 THR B 110 -105.38 -115.51 REMARK 500 PRO B 152 -146.18 -80.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A80 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 DBREF 7ER7 A 1 206 UNP P30043 BLVRB_HUMAN 1 206 DBREF 7ER7 B 1 206 UNP P30043 BLVRB_HUMAN 1 206 SEQADV 7ER7 HIS A 0 UNP P30043 EXPRESSION TAG SEQADV 7ER7 HIS B 0 UNP P30043 EXPRESSION TAG SEQRES 1 A 207 HIS MET ALA VAL LYS LYS ILE ALA ILE PHE GLY ALA THR SEQRES 2 A 207 GLY GLN THR GLY LEU THR THR LEU ALA GLN ALA VAL GLN SEQRES 3 A 207 ALA GLY TYR GLU VAL THR VAL LEU VAL ARG ASP SER SER SEQRES 4 A 207 ARG LEU PRO SER GLU GLY PRO ARG PRO ALA HIS VAL VAL SEQRES 5 A 207 VAL GLY ASP VAL LEU GLN ALA ALA ASP VAL ASP LYS THR SEQRES 6 A 207 VAL ALA GLY GLN ASP ALA VAL ILE VAL LEU LEU GLY THR SEQRES 7 A 207 ARG ASN ASP LEU SER PRO THR THR VAL MET SER GLU GLY SEQRES 8 A 207 ALA ARG ASN ILE VAL ALA ALA MET LYS ALA HIS GLY VAL SEQRES 9 A 207 ASP LYS VAL VAL ALA CYS THR SER ALA PHE LEU LEU TRP SEQRES 10 A 207 ASP PRO THR LYS VAL PRO PRO ARG LEU GLN ALA VAL THR SEQRES 11 A 207 ASP ASP HIS ILE ARG MET HIS LYS VAL LEU ARG GLU SER SEQRES 12 A 207 GLY LEU LYS TYR VAL ALA VAL MET PRO PRO HIS ILE GLY SEQRES 13 A 207 ASP GLN PRO LEU THR GLY ALA TYR THR VAL THR LEU ASP SEQRES 14 A 207 GLY ARG GLY PRO SER ARG VAL ILE SER LYS HIS ASP LEU SEQRES 15 A 207 GLY HIS PHE MET LEU ARG CYS LEU THR THR ASP GLU TYR SEQRES 16 A 207 ASP GLY HIS SER THR TYR PRO SER HIS GLN TYR GLN SEQRES 1 B 207 HIS MET ALA VAL LYS LYS ILE ALA ILE PHE GLY ALA THR SEQRES 2 B 207 GLY GLN THR GLY LEU THR THR LEU ALA GLN ALA VAL GLN SEQRES 3 B 207 ALA GLY TYR GLU VAL THR VAL LEU VAL ARG ASP SER SER SEQRES 4 B 207 ARG LEU PRO SER GLU GLY PRO ARG PRO ALA HIS VAL VAL SEQRES 5 B 207 VAL GLY ASP VAL LEU GLN ALA ALA ASP VAL ASP LYS THR SEQRES 6 B 207 VAL ALA GLY GLN ASP ALA VAL ILE VAL LEU LEU GLY THR SEQRES 7 B 207 ARG ASN ASP LEU SER PRO THR THR VAL MET SER GLU GLY SEQRES 8 B 207 ALA ARG ASN ILE VAL ALA ALA MET LYS ALA HIS GLY VAL SEQRES 9 B 207 ASP LYS VAL VAL ALA CYS THR SER ALA PHE LEU LEU TRP SEQRES 10 B 207 ASP PRO THR LYS VAL PRO PRO ARG LEU GLN ALA VAL THR SEQRES 11 B 207 ASP ASP HIS ILE ARG MET HIS LYS VAL LEU ARG GLU SER SEQRES 12 B 207 GLY LEU LYS TYR VAL ALA VAL MET PRO PRO HIS ILE GLY SEQRES 13 B 207 ASP GLN PRO LEU THR GLY ALA TYR THR VAL THR LEU ASP SEQRES 14 B 207 GLY ARG GLY PRO SER ARG VAL ILE SER LYS HIS ASP LEU SEQRES 15 B 207 GLY HIS PHE MET LEU ARG CYS LEU THR THR ASP GLU TYR SEQRES 16 B 207 ASP GLY HIS SER THR TYR PRO SER HIS GLN TYR GLN HET NAP A 401 48 HET A80 A 402 26 HET SO4 A 403 5 HET NAP B 401 48 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM A80 4-[(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2- HETNAM 2 A80 YL)CARBAMOYL]BENZOIC ACID HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 A80 C22 H25 N O3 FORMUL 5 SO4 6(O4 S 2-) FORMUL 12 HOH *305(H2 O) HELIX 1 AA1 GLY A 13 ALA A 26 1 14 HELIX 2 AA2 ASP A 36 LEU A 40 5 5 HELIX 3 AA3 GLN A 57 ALA A 66 1 10 HELIX 4 AA4 THR A 85 GLY A 102 1 18 HELIX 5 AA5 SER A 111 TRP A 116 5 6 HELIX 6 AA6 ASP A 117 VAL A 121 5 5 HELIX 7 AA7 PRO A 122 ARG A 124 5 3 HELIX 8 AA8 LEU A 125 SER A 142 1 18 HELIX 9 AA9 LYS A 178 CYS A 188 1 11 HELIX 10 AB1 LEU A 189 THR A 191 5 3 HELIX 11 AB2 GLY B 13 GLY B 27 1 15 HELIX 12 AB3 ASP B 36 LEU B 40 5 5 HELIX 13 AB4 GLN B 57 ALA B 66 1 10 HELIX 14 AB5 THR B 85 GLY B 102 1 18 HELIX 15 AB6 SER B 111 TRP B 116 5 6 HELIX 16 AB7 ASP B 117 VAL B 121 5 5 HELIX 17 AB8 PRO B 122 ARG B 124 5 3 HELIX 18 AB9 LEU B 125 GLU B 141 1 17 HELIX 19 AC1 LYS B 178 CYS B 188 1 11 HELIX 20 AC2 LEU B 189 THR B 191 5 3 SHEET 1 AA1 8 HIS A 49 VAL A 52 0 SHEET 2 AA1 8 GLU A 29 VAL A 34 1 N VAL A 32 O VAL A 51 SHEET 3 AA1 8 LYS A 5 PHE A 9 1 N ILE A 6 O THR A 31 SHEET 4 AA1 8 ALA A 70 VAL A 73 1 O ILE A 72 N ALA A 7 SHEET 5 AA1 8 LYS A 105 CYS A 109 1 O VAL A 107 N VAL A 73 SHEET 6 AA1 8 LYS A 145 VAL A 149 1 O LYS A 145 N VAL A 106 SHEET 7 AA1 8 SER A 198 SER A 202 1 O THR A 199 N ALA A 148 SHEET 8 AA1 8 THR A 164 LEU A 167 -1 N THR A 164 O SER A 202 SHEET 1 AA2 2 HIS A 153 GLY A 155 0 SHEET 2 AA2 2 VAL A 175 SER A 177 1 O ILE A 176 N HIS A 153 SHEET 1 AA3 8 HIS B 49 VAL B 52 0 SHEET 2 AA3 8 GLU B 29 VAL B 34 1 N VAL B 32 O VAL B 51 SHEET 3 AA3 8 LYS B 5 PHE B 9 1 N ILE B 8 O THR B 31 SHEET 4 AA3 8 ALA B 70 VAL B 73 1 O ILE B 72 N ALA B 7 SHEET 5 AA3 8 LYS B 105 CYS B 109 1 O VAL B 107 N VAL B 71 SHEET 6 AA3 8 LYS B 145 VAL B 149 1 O VAL B 149 N ALA B 108 SHEET 7 AA3 8 SER B 198 SER B 202 1 O THR B 199 N ALA B 148 SHEET 8 AA3 8 THR B 164 LEU B 167 -1 N THR B 164 O SER B 202 SHEET 1 AA4 2 HIS B 153 GLY B 155 0 SHEET 2 AA4 2 VAL B 175 SER B 177 1 O ILE B 176 N HIS B 153 SITE 1 AC1 36 GLY A 10 THR A 12 GLY A 13 GLN A 14 SITE 2 AC1 36 THR A 15 ARG A 35 ARG A 39 ASP A 54 SITE 3 AC1 36 VAL A 55 LEU A 74 LEU A 75 GLY A 76 SITE 4 AC1 36 ARG A 78 VAL A 86 MET A 87 CYS A 109 SITE 5 AC1 36 THR A 110 HIS A 132 PRO A 151 PRO A 152 SITE 6 AC1 36 HIS A 153 ILE A 154 A80 A 402 HOH A 508 SITE 7 AC1 36 HOH A 515 HOH A 528 HOH A 548 HOH A 556 SITE 8 AC1 36 HOH A 560 HOH A 565 HOH A 576 HOH A 594 SITE 9 AC1 36 HOH A 595 HOH A 600 SER B 82 HOH B 538 SITE 1 AC2 11 MET A 1 LEU A 81 PHE A 113 TRP A 116 SITE 2 AC2 11 PRO A 152 HIS A 153 ARG A 170 ARG A 174 SITE 3 AC2 11 TYR A 200 NAP A 401 HOH A 548 SITE 1 AC3 5 SER A 173 ARG A 174 HOH A 509 HOH A 525 SITE 2 AC3 5 HOH A 531 SITE 1 AC4 26 ASP A 36 SER A 38 HOH A 501 GLY B 10 SITE 2 AC4 26 THR B 12 GLY B 13 GLN B 14 THR B 15 SITE 3 AC4 26 ARG B 35 ARG B 39 ASP B 54 VAL B 55 SITE 4 AC4 26 LEU B 75 GLY B 76 ARG B 78 CYS B 109 SITE 5 AC4 26 THR B 110 SER B 111 HIS B 132 PRO B 151 SITE 6 AC4 26 PRO B 152 ILE B 154 SO4 B 406 HOH B 511 SITE 7 AC4 26 HOH B 563 HOH B 572 SITE 1 AC5 9 ARG A 140 HOH A 616 HIS B 153 GLY B 155 SITE 2 AC5 9 ASP B 156 GLN B 157 VAL B 175 HOH B 507 SITE 3 AC5 9 HOH B 546 SITE 1 AC6 4 ALA A 48 HIS A 49 LYS B 137 HOH B 501 SITE 1 AC7 3 HIS A 183 LYS B 4 HOH B 512 SITE 1 AC8 3 ALA B 26 TYR B 28 HOH B 509 SITE 1 AC9 5 ARG A 134 ARG B 78 HIS B 153 NAP B 401 SITE 2 AC9 5 HOH B 529 CRYST1 82.253 117.859 42.023 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023796 0.00000