HEADER OXIDOREDUCTASE 06-MAY-21 7ERC TITLE CRYSTAL STRUCTURE OF HUMAN BILIVERDIN IX-BETA REDUCTASE B WITH TITLE 2 DEFERASIROX (ICL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN REDUCTASE (NADPH); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FR,BILIVERDIN REDUCTASE B,BVR-B,BILIVERDIN-IX BETA- COMPND 5 REDUCTASE,GREEN HEME-BINDING PROTEIN,GHBP,NADPH-DEPENDENT DIAPHORASE, COMPND 6 NADPH-FLAVIN REDUCTASE,FLR; COMPND 7 EC: 1.5.1.30,1.3.1.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BLVRB, FLR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLATELETS, BILIVERDIN REDUCTASE B, BLVRB, INHIBITORS, NADP, KEYWDS 2 DEFERASIROX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.GRIESINGER,D.LEE,K.S.RYU,M.KIM,J.H.HA REVDAT 3 29-NOV-23 7ERC 1 REMARK REVDAT 2 23-FEB-22 7ERC 1 JRNL REVDAT 1 19-JAN-22 7ERC 0 JRNL AUTH M.KIM,J.H.HA,J.CHOI,B.R.KIM,V.GAPSYS,K.O.LEE,J.G.JEE, JRNL AUTH 2 K.S.CHAKRABARTI,B.L.DE GROOT,C.GRIESINGER,K.S.RYU,D.LEE JRNL TITL REPOSITIONING FOOD AND DRUG ADMINISTRATION-APPROVED DRUGS JRNL TITL 2 FOR INHIBITING BILIVERDIN IX BETA REDUCTASE B AS A NOVEL JRNL TITL 3 THROMBOCYTOPENIA THERAPEUTIC TARGET. JRNL REF J.MED.CHEM. V. 65 2548 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34957824 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01664 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 64875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.6200 - 2.8700 0.99 4570 145 0.1825 0.2191 REMARK 3 2 2.8700 - 2.5100 1.00 4566 145 0.1937 0.2094 REMARK 3 3 2.5100 - 2.2800 1.00 4519 144 0.1851 0.2129 REMARK 3 4 2.2800 - 2.1200 1.00 4489 143 0.1830 0.2064 REMARK 3 5 2.1200 - 1.9900 1.00 4454 141 0.1890 0.2125 REMARK 3 6 1.9900 - 1.8900 1.00 4499 144 0.1941 0.2395 REMARK 3 7 1.8900 - 1.8100 0.99 4451 141 0.1956 0.2371 REMARK 3 8 1.8100 - 1.7400 1.00 4454 142 0.2064 0.2475 REMARK 3 9 1.7400 - 1.6800 1.00 4454 141 0.2179 0.2931 REMARK 3 10 1.6800 - 1.6300 1.00 4434 142 0.2250 0.2419 REMARK 3 11 1.6300 - 1.5800 0.99 4443 141 0.2338 0.2569 REMARK 3 12 1.5800 - 1.5400 0.99 4367 138 0.2382 0.2915 REMARK 3 13 1.5400 - 1.5000 0.98 4377 140 0.2516 0.2715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.093 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3329 REMARK 3 ANGLE : 1.414 4562 REMARK 3 CHIRALITY : 0.083 533 REMARK 3 PLANARITY : 0.009 575 REMARK 3 DIHEDRAL : 11.422 2647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1455 9.4677 -12.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.1099 REMARK 3 T33: 0.1068 T12: -0.0062 REMARK 3 T13: -0.0023 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.7928 L22: 2.0483 REMARK 3 L33: 2.2908 L12: 0.3634 REMARK 3 L13: -0.1753 L23: 0.6862 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.3201 S13: 0.2164 REMARK 3 S21: -0.1649 S22: 0.0663 S23: -0.0776 REMARK 3 S31: -0.1457 S32: 0.0104 S33: -0.0660 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3535 7.9829 -7.0384 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1113 REMARK 3 T33: 0.1391 T12: 0.0174 REMARK 3 T13: 0.0089 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.8624 L22: 1.0852 REMARK 3 L33: 2.4358 L12: 0.1141 REMARK 3 L13: -0.1688 L23: -0.5427 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 0.1050 S13: 0.3763 REMARK 3 S21: 0.0422 S22: 0.0302 S23: 0.0959 REMARK 3 S31: -0.3796 S32: -0.1398 S33: -0.0685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7962 -5.5991 0.5163 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.0688 REMARK 3 T33: 0.0671 T12: 0.0087 REMARK 3 T13: 0.0015 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6238 L22: 0.6357 REMARK 3 L33: 3.0737 L12: 0.2063 REMARK 3 L13: 0.1060 L23: 0.6024 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0784 S13: -0.0958 REMARK 3 S21: 0.0553 S22: 0.0322 S23: -0.0419 REMARK 3 S31: 0.1285 S32: -0.0166 S33: -0.0475 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7174 1.3463 -2.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.1153 REMARK 3 T33: 0.1099 T12: 0.0025 REMARK 3 T13: -0.0054 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.3064 L22: 2.2173 REMARK 3 L33: 0.7023 L12: 0.4343 REMARK 3 L13: -0.0343 L23: -0.4254 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.0815 S13: 0.0373 REMARK 3 S21: 0.0734 S22: -0.0230 S23: -0.2771 REMARK 3 S31: -0.0282 S32: 0.1080 S33: -0.0123 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0278 -32.1726 0.9576 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.1618 REMARK 3 T33: 0.4166 T12: 0.0243 REMARK 3 T13: 0.0189 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.7026 L22: 4.1714 REMARK 3 L33: 1.0540 L12: 0.0011 REMARK 3 L13: 0.0349 L23: 1.6523 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.1073 S13: 0.3192 REMARK 3 S21: -0.4757 S22: 0.0068 S23: -0.0408 REMARK 3 S31: -0.2899 S32: 0.0166 S33: -0.0659 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0560 -32.3617 -0.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.3302 T22: 0.2147 REMARK 3 T33: 0.5096 T12: 0.0271 REMARK 3 T13: -0.0461 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 2.1818 L22: 3.7752 REMARK 3 L33: 2.4201 L12: -1.3795 REMARK 3 L13: 0.9547 L23: 0.3982 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: -0.0087 S13: -0.2442 REMARK 3 S21: -0.6326 S22: -0.0966 S23: 0.5446 REMARK 3 S31: 0.2510 S32: 0.0900 S33: -0.0442 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.9612 -13.3337 1.6038 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.3010 REMARK 3 T33: 0.5752 T12: 0.0613 REMARK 3 T13: 0.0767 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.6519 L22: 5.4892 REMARK 3 L33: 1.9809 L12: -1.8908 REMARK 3 L13: 1.0901 L23: -3.1969 REMARK 3 S TENSOR REMARK 3 S11: 0.4855 S12: 0.5978 S13: -0.5229 REMARK 3 S21: -0.7352 S22: -0.3325 S23: -0.7900 REMARK 3 S31: 0.1196 S32: 0.3033 S33: -0.2200 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8711 -21.3101 13.2313 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.3904 REMARK 3 T33: 0.3910 T12: 0.0410 REMARK 3 T13: 0.0190 T23: 0.0702 REMARK 3 L TENSOR REMARK 3 L11: 1.6718 L22: 3.3323 REMARK 3 L33: 1.9964 L12: -0.9483 REMARK 3 L13: 0.0838 L23: 1.3511 REMARK 3 S TENSOR REMARK 3 S11: -0.2324 S12: -0.4799 S13: -0.3499 REMARK 3 S21: 0.4365 S22: 0.3317 S23: -0.0872 REMARK 3 S31: 0.0344 S32: 0.2933 S33: -0.0896 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ERC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 1.16_3549 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.09644 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44970 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HE5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9-2.0M AMMONIUM SULFATE, 0.1M BIS REMARK 280 -TRIS (PH 6.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.94000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.75150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.94000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.75150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 547 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 124 O HOH B 501 1.83 REMARK 500 O HOH A 625 O HOH A 657 1.86 REMARK 500 OE1 GLN B 126 O HOH B 502 1.99 REMARK 500 O HOH B 519 O HOH B 580 2.01 REMARK 500 O HOH B 593 O HOH B 606 2.05 REMARK 500 O HOH A 613 O HOH A 681 2.07 REMARK 500 ND1 HIS A 153 O HOH A 501 2.09 REMARK 500 O HOH A 636 O HOH A 639 2.09 REMARK 500 O HOH A 651 O HOH A 694 2.09 REMARK 500 O HOH B 554 O HOH B 597 2.10 REMARK 500 O HOH B 595 O HOH B 602 2.10 REMARK 500 NZ LYS B 99 O SER B 142 2.13 REMARK 500 OD1 ASP B 156 O HOH B 503 2.13 REMARK 500 O HOH A 535 O HOH A 645 2.16 REMARK 500 O HOH A 694 O HOH A 699 2.18 REMARK 500 O HOH A 609 O HOH A 682 2.19 REMARK 500 O HOH A 606 O HOH A 666 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 99 NH1 ARG B 170 1554 1.93 REMARK 500 O HOH A 527 O HOH B 504 1554 1.93 REMARK 500 O HOH A 538 O HOH A 645 1554 2.05 REMARK 500 O HOH A 706 O HOH B 600 3455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -128.59 52.82 REMARK 500 THR A 110 -104.67 -116.46 REMARK 500 PRO A 152 -148.67 -84.25 REMARK 500 ALA B 2 89.56 -151.77 REMARK 500 ARG B 78 -67.64 72.42 REMARK 500 ARG B 78 -72.47 77.10 REMARK 500 ASN B 79 33.08 -146.28 REMARK 500 THR B 110 -108.30 -116.67 REMARK 500 PRO B 152 -152.74 -77.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 DBREF 7ERC A 1 206 UNP P30043 BLVRB_HUMAN 1 206 DBREF 7ERC B 1 206 UNP P30043 BLVRB_HUMAN 1 206 SEQRES 1 A 206 MET ALA VAL LYS LYS ILE ALA ILE PHE GLY ALA THR GLY SEQRES 2 A 206 GLN THR GLY LEU THR THR LEU ALA GLN ALA VAL GLN ALA SEQRES 3 A 206 GLY TYR GLU VAL THR VAL LEU VAL ARG ASP SER SER ARG SEQRES 4 A 206 LEU PRO SER GLU GLY PRO ARG PRO ALA HIS VAL VAL VAL SEQRES 5 A 206 GLY ASP VAL LEU GLN ALA ALA ASP VAL ASP LYS THR VAL SEQRES 6 A 206 ALA GLY GLN ASP ALA VAL ILE VAL LEU LEU GLY THR ARG SEQRES 7 A 206 ASN ASP LEU SER PRO THR THR VAL MET SER GLU GLY ALA SEQRES 8 A 206 ARG ASN ILE VAL ALA ALA MET LYS ALA HIS GLY VAL ASP SEQRES 9 A 206 LYS VAL VAL ALA CYS THR SER ALA PHE LEU LEU TRP ASP SEQRES 10 A 206 PRO THR LYS VAL PRO PRO ARG LEU GLN ALA VAL THR ASP SEQRES 11 A 206 ASP HIS ILE ARG MET HIS LYS VAL LEU ARG GLU SER GLY SEQRES 12 A 206 LEU LYS TYR VAL ALA VAL MET PRO PRO HIS ILE GLY ASP SEQRES 13 A 206 GLN PRO LEU THR GLY ALA TYR THR VAL THR LEU ASP GLY SEQRES 14 A 206 ARG GLY PRO SER ARG VAL ILE SER LYS HIS ASP LEU GLY SEQRES 15 A 206 HIS PHE MET LEU ARG CYS LEU THR THR ASP GLU TYR ASP SEQRES 16 A 206 GLY HIS SER THR TYR PRO SER HIS GLN TYR GLN SEQRES 1 B 206 MET ALA VAL LYS LYS ILE ALA ILE PHE GLY ALA THR GLY SEQRES 2 B 206 GLN THR GLY LEU THR THR LEU ALA GLN ALA VAL GLN ALA SEQRES 3 B 206 GLY TYR GLU VAL THR VAL LEU VAL ARG ASP SER SER ARG SEQRES 4 B 206 LEU PRO SER GLU GLY PRO ARG PRO ALA HIS VAL VAL VAL SEQRES 5 B 206 GLY ASP VAL LEU GLN ALA ALA ASP VAL ASP LYS THR VAL SEQRES 6 B 206 ALA GLY GLN ASP ALA VAL ILE VAL LEU LEU GLY THR ARG SEQRES 7 B 206 ASN ASP LEU SER PRO THR THR VAL MET SER GLU GLY ALA SEQRES 8 B 206 ARG ASN ILE VAL ALA ALA MET LYS ALA HIS GLY VAL ASP SEQRES 9 B 206 LYS VAL VAL ALA CYS THR SER ALA PHE LEU LEU TRP ASP SEQRES 10 B 206 PRO THR LYS VAL PRO PRO ARG LEU GLN ALA VAL THR ASP SEQRES 11 B 206 ASP HIS ILE ARG MET HIS LYS VAL LEU ARG GLU SER GLY SEQRES 12 B 206 LEU LYS TYR VAL ALA VAL MET PRO PRO HIS ILE GLY ASP SEQRES 13 B 206 GLN PRO LEU THR GLY ALA TYR THR VAL THR LEU ASP GLY SEQRES 14 B 206 ARG GLY PRO SER ARG VAL ILE SER LYS HIS ASP LEU GLY SEQRES 15 B 206 HIS PHE MET LEU ARG CYS LEU THR THR ASP GLU TYR ASP SEQRES 16 B 206 GLY HIS SER THR TYR PRO SER HIS GLN TYR GLN HET NAP A 401 48 HET JBL A 402 28 HET SO4 A 403 5 HET NAP B 401 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM JBL 4-[3,5-BIS(2-HYDROXYPHENYL)-1,2,4-TRIAZOL-1-YL]BENZOIC HETNAM 2 JBL ACID HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 JBL C21 H15 N3 O4 FORMUL 5 SO4 O4 S 2- FORMUL 7 HOH *326(H2 O) HELIX 1 AA1 GLY A 13 ALA A 26 1 14 HELIX 2 AA2 GLN A 57 ALA A 66 1 10 HELIX 3 AA3 THR A 85 GLY A 102 1 18 HELIX 4 AA4 SER A 111 TRP A 116 5 6 HELIX 5 AA5 ASP A 117 VAL A 121 5 5 HELIX 6 AA6 PRO A 122 ARG A 124 5 3 HELIX 7 AA7 LEU A 125 SER A 142 1 18 HELIX 8 AA8 LYS A 178 CYS A 188 1 11 HELIX 9 AA9 LEU A 189 THR A 191 5 3 HELIX 10 AB1 GLY B 13 GLY B 27 1 15 HELIX 11 AB2 ASP B 36 LEU B 40 5 5 HELIX 12 AB3 GLN B 57 ALA B 66 1 10 HELIX 13 AB4 THR B 85 GLY B 102 1 18 HELIX 14 AB5 SER B 111 TRP B 116 5 6 HELIX 15 AB6 ASP B 117 VAL B 121 5 5 HELIX 16 AB7 PRO B 122 ARG B 124 5 3 HELIX 17 AB8 LEU B 125 SER B 142 1 18 HELIX 18 AB9 LYS B 178 CYS B 188 1 11 SHEET 1 AA1 8 HIS A 49 VAL A 52 0 SHEET 2 AA1 8 GLU A 29 VAL A 34 1 N VAL A 32 O VAL A 51 SHEET 3 AA1 8 LYS A 5 PHE A 9 1 N ILE A 6 O THR A 31 SHEET 4 AA1 8 ALA A 70 VAL A 73 1 O ILE A 72 N ALA A 7 SHEET 5 AA1 8 LYS A 105 CYS A 109 1 O VAL A 107 N VAL A 73 SHEET 6 AA1 8 LYS A 145 VAL A 149 1 O LYS A 145 N VAL A 106 SHEET 7 AA1 8 SER A 198 SER A 202 1 O THR A 199 N ALA A 148 SHEET 8 AA1 8 THR A 164 LEU A 167 -1 N THR A 164 O SER A 202 SHEET 1 AA2 2 HIS A 153 GLY A 155 0 SHEET 2 AA2 2 VAL A 175 SER A 177 1 O ILE A 176 N HIS A 153 SHEET 1 AA3 8 HIS B 49 VAL B 52 0 SHEET 2 AA3 8 GLU B 29 VAL B 34 1 N VAL B 32 O VAL B 51 SHEET 3 AA3 8 LYS B 5 PHE B 9 1 N ILE B 6 O THR B 31 SHEET 4 AA3 8 ALA B 70 VAL B 73 1 O ILE B 72 N ALA B 7 SHEET 5 AA3 8 LYS B 105 CYS B 109 1 O VAL B 107 N VAL B 71 SHEET 6 AA3 8 LYS B 145 VAL B 149 1 O LYS B 145 N VAL B 106 SHEET 7 AA3 8 SER B 198 SER B 202 1 O THR B 199 N ALA B 148 SHEET 8 AA3 8 THR B 164 LEU B 167 -1 N THR B 164 O SER B 202 SHEET 1 AA4 2 HIS B 153 GLY B 155 0 SHEET 2 AA4 2 VAL B 175 SER B 177 1 O ILE B 176 N HIS B 153 SITE 1 AC1 38 GLY A 10 THR A 12 GLY A 13 GLN A 14 SITE 2 AC1 38 THR A 15 ARG A 35 SER A 38 ASP A 54 SITE 3 AC1 38 VAL A 55 LEU A 74 LEU A 75 GLY A 76 SITE 4 AC1 38 THR A 77 ARG A 78 VAL A 86 MET A 87 SITE 5 AC1 38 CYS A 109 THR A 110 SER A 111 HIS A 132 SITE 6 AC1 38 PRO A 151 PRO A 152 HIS A 153 ILE A 154 SITE 7 AC1 38 JBL A 402 HOH A 501 HOH A 513 HOH A 541 SITE 8 AC1 38 HOH A 543 HOH A 561 HOH A 565 HOH A 577 SITE 9 AC1 38 HOH A 581 HOH A 590 HOH A 603 HOH A 610 SITE 10 AC1 38 SER B 82 HOH B 534 SITE 1 AC2 16 MET A 1 ALA A 2 SER A 111 ALA A 112 SITE 2 AC2 16 PHE A 113 TRP A 116 LEU A 125 PRO A 152 SITE 3 AC2 16 HIS A 153 ARG A 170 ARG A 174 TYR A 200 SITE 4 AC2 16 NAP A 401 HOH A 501 HOH A 566 HOH A 634 SITE 1 AC3 2 HIS A 183 LYS B 4 SITE 1 AC4 31 SER A 37 GLY B 10 THR B 12 GLY B 13 SITE 2 AC4 31 GLN B 14 THR B 15 ARG B 35 ARG B 39 SITE 3 AC4 31 ASP B 54 VAL B 55 LEU B 74 LEU B 75 SITE 4 AC4 31 GLY B 76 ARG B 78 VAL B 86 CYS B 109 SITE 5 AC4 31 THR B 110 HIS B 132 PRO B 151 PRO B 152 SITE 6 AC4 31 HIS B 153 ILE B 154 HOH B 508 HOH B 514 SITE 7 AC4 31 HOH B 523 HOH B 526 HOH B 532 HOH B 548 SITE 8 AC4 31 HOH B 550 HOH B 571 HOH B 576 CRYST1 81.880 117.503 41.765 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023943 0.00000