HEADER TRANSFERASE 08-MAY-21 7ES0 TITLE A RICE GLYCOSYLTRANSFERASE IN COMPLEX WITH UDP AND REX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OS03G0702000, OSNPB_030702000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STEVIOL GLUCOSYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU REVDAT 2 15-DEC-21 7ES0 1 JRNL REVDAT 1 08-DEC-21 7ES0 0 JRNL AUTH J.ZHANG,M.TANG,Y.CHEN,D.KE,J.ZHOU,X.XU,W.YANG,J.HE,H.DONG, JRNL AUTH 2 Y.WEI,J.H.NAISMITH,Y.LIN,X.ZHU,W.CHENG JRNL TITL CATALYTIC FLEXIBILITY OF RICE GLYCOSYLTRANSFERASE OSUGT91C1 JRNL TITL 2 FOR THE PRODUCTION OF PALATABLE STEVIOL GLYCOSIDES. JRNL REF NAT COMMUN V. 12 7030 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34857750 JRNL DOI 10.1038/S41467-021-27144-4 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 69.3 REMARK 3 NUMBER OF REFLECTIONS : 58628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.228 REMARK 3 FREE R VALUE TEST SET COUNT : 3065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 409 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -0.77700 REMARK 3 B33 (A**2) : -0.25300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3371 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3224 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4604 ; 1.358 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7431 ; 1.346 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 6.545 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;30.436 ;19.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;11.825 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;15.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3709 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 755 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 699 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 73 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1639 ; 0.159 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 367 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1656 ; 1.113 ; 1.335 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1655 ; 1.099 ; 1.333 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2077 ; 1.810 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2078 ; 1.810 ; 2.002 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 1.631 ; 1.570 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1716 ; 1.631 ; 1.570 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2527 ; 2.563 ; 2.263 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2528 ; 2.562 ; 2.263 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8091 -26.5713 21.7561 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0077 REMARK 3 T33: 0.0257 T12: 0.0004 REMARK 3 T13: -0.0096 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2241 L22: 0.1724 REMARK 3 L33: 0.1902 L12: -0.1876 REMARK 3 L13: 0.0438 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0158 S13: -0.0142 REMARK 3 S21: 0.0257 S22: -0.0080 S23: 0.0038 REMARK 3 S31: 0.0385 S32: -0.0158 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9970 -20.8157 32.2803 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0447 REMARK 3 T33: 0.0095 T12: -0.0162 REMARK 3 T13: -0.0007 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3810 L22: 0.3269 REMARK 3 L33: 0.1884 L12: -0.3430 REMARK 3 L13: -0.0045 L23: 0.0434 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.0471 S13: 0.0081 REMARK 3 S21: 0.0554 S22: 0.0178 S23: -0.0046 REMARK 3 S31: 0.0085 S32: -0.0670 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1927 -11.8523 25.7212 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0057 REMARK 3 T33: 0.0278 T12: -0.0092 REMARK 3 T13: -0.0043 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0850 L22: 0.0532 REMARK 3 L33: 0.3371 L12: -0.0540 REMARK 3 L13: -0.0276 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0115 S13: 0.0165 REMARK 3 S21: 0.0106 S22: 0.0012 S23: -0.0155 REMARK 3 S31: 0.0252 S32: 0.0045 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 261 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3121 -10.1474 2.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0082 REMARK 3 T33: 0.0164 T12: 0.0066 REMARK 3 T13: 0.0005 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.2344 L22: 0.0309 REMARK 3 L33: 0.3264 L12: -0.0750 REMARK 3 L13: 0.1213 L23: -0.0611 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0218 S13: 0.0127 REMARK 3 S21: -0.0077 S22: -0.0115 S23: 0.0022 REMARK 3 S31: 0.0085 S32: 0.0155 S33: -0.0232 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3178 1.0448 0.0638 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0245 REMARK 3 T33: 0.0472 T12: -0.0305 REMARK 3 T13: -0.0226 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.8374 L22: 0.2557 REMARK 3 L33: 0.2721 L12: -0.1459 REMARK 3 L13: 0.2369 L23: -0.2316 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.0721 S13: 0.1083 REMARK 3 S21: 0.0248 S22: -0.0030 S23: -0.0502 REMARK 3 S31: -0.0831 S32: 0.0414 S33: 0.0813 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 433 A 458 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4478 -18.5652 20.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0125 REMARK 3 T33: 0.0961 T12: 0.0140 REMARK 3 T13: -0.0104 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.1298 L22: 0.6763 REMARK 3 L33: 3.2413 L12: 0.0113 REMARK 3 L13: 0.0685 L23: -1.4600 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0097 S13: -0.1190 REMARK 3 S21: -0.0435 S22: -0.0552 S23: -0.0596 REMARK 3 S31: 0.1089 S32: 0.1270 S33: 0.0383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7ES0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 57.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 57.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.01700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000 0.1 M HEPES BUFFER PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.78050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.97300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.54100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.97300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.78050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.54100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 TYR A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 TYR A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 ARG A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 GLU A 170 REMARK 465 SER A 171 REMARK 465 PRO A 172 REMARK 465 ALA A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 GLN A 177 REMARK 465 GLY A 178 REMARK 465 ARG A 179 REMARK 465 PRO A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 PRO A 184 REMARK 465 THR A 185 REMARK 465 PHE A 186 REMARK 465 GLU A 187 REMARK 465 VAL A 188 REMARK 465 ALA A 189 REMARK 465 ARG A 190 REMARK 465 MET A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 ILE A 194 REMARK 465 ARG A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 SER A 200 REMARK 465 GLY A 201 REMARK 465 TYR A 460 REMARK 465 LYS A 461 REMARK 465 ASP A 462 REMARK 465 LEU A 463 REMARK 465 GLU A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 -165.48 -160.00 REMARK 500 ASP A 161 65.78 -150.80 REMARK 500 ARG A 221 69.65 -115.52 REMARK 500 SER A 235 -57.38 -127.73 REMARK 500 ARG A 256 97.69 -49.14 REMARK 500 GLU A 283 -28.02 -150.25 REMARK 500 THR A 337 52.14 -96.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1080 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.54 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ERX RELATED DB: PDB REMARK 900 RELATED ID: 7ERY RELATED DB: PDB DBREF 7ES0 A 1 462 UNP Q0DPB7 Q0DPB7_ORYSJ 1 462 SEQADV 7ES0 LEU A 463 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 GLU A 464 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 HIS A 465 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 HIS A 466 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 HIS A 467 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 HIS A 468 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 HIS A 469 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES0 HIS A 470 UNP Q0DPB7 EXPRESSION TAG SEQRES 1 A 470 MET ASP SER GLY TYR SER SER SER TYR ALA ALA ALA ALA SEQRES 2 A 470 GLY MET HIS VAL VAL ILE CYS PRO TRP LEU ALA PHE GLY SEQRES 3 A 470 HIS LEU LEU PRO CYS LEU ASP LEU ALA GLN ARG LEU ALA SEQRES 4 A 470 SER ARG GLY HIS ARG VAL SER PHE VAL SER THR PRO ARG SEQRES 5 A 470 ASN ILE SER ARG LEU PRO PRO VAL ARG PRO ALA LEU ALA SEQRES 6 A 470 PRO LEU VAL ALA PHE VAL ALA LEU PRO LEU PRO ARG VAL SEQRES 7 A 470 GLU GLY LEU PRO ASP GLY ALA GLU SER THR ASN ASP VAL SEQRES 8 A 470 PRO HIS ASP ARG PRO ASP MET VAL GLU LEU HIS ARG ARG SEQRES 9 A 470 ALA PHE ASP GLY LEU ALA ALA PRO PHE SER GLU PHE LEU SEQRES 10 A 470 GLY THR ALA CYS ALA ASP TRP VAL ILE VAL ASP VAL PHE SEQRES 11 A 470 HIS HIS TRP ALA ALA ALA ALA ALA LEU GLU HIS LYS VAL SEQRES 12 A 470 PRO CYS ALA MET MET LEU LEU GLY SER ALA HIS MET ILE SEQRES 13 A 470 ALA SER ILE ALA ASP ARG ARG LEU GLU ARG ALA GLU THR SEQRES 14 A 470 GLU SER PRO ALA ALA ALA GLY GLN GLY ARG PRO ALA ALA SEQRES 15 A 470 ALA PRO THR PHE GLU VAL ALA ARG MET LYS LEU ILE ARG SEQRES 16 A 470 THR LYS GLY SER SER GLY MET SER LEU ALA GLU ARG PHE SEQRES 17 A 470 SER LEU THR LEU SER ARG SER SER LEU VAL VAL GLY ARG SEQRES 18 A 470 SER CYS VAL GLU PHE GLU PRO GLU THR VAL PRO LEU LEU SEQRES 19 A 470 SER THR LEU ARG GLY LYS PRO ILE THR PHE LEU GLY LEU SEQRES 20 A 470 MET PRO PRO LEU HIS GLU GLY ARG ARG GLU ASP GLY GLU SEQRES 21 A 470 ASP ALA THR VAL ARG TRP LEU ASP ALA GLN PRO ALA LYS SEQRES 22 A 470 SER VAL VAL TYR VAL ALA LEU GLY SER GLU VAL PRO LEU SEQRES 23 A 470 GLY VAL GLU LYS VAL HIS GLU LEU ALA LEU GLY LEU GLU SEQRES 24 A 470 LEU ALA GLY THR ARG PHE LEU TRP ALA LEU ARG LYS PRO SEQRES 25 A 470 THR GLY VAL SER ASP ALA ASP LEU LEU PRO ALA GLY PHE SEQRES 26 A 470 GLU GLU ARG THR ARG GLY ARG GLY VAL VAL ALA THR ARG SEQRES 27 A 470 TRP VAL PRO GLN MET SER ILE LEU ALA HIS ALA ALA VAL SEQRES 28 A 470 GLY ALA PHE LEU THR HIS CYS GLY TRP ASN SER THR ILE SEQRES 29 A 470 GLU GLY LEU MET PHE GLY HIS PRO LEU ILE MET LEU PRO SEQRES 30 A 470 ILE PHE GLY ASP GLN GLY PRO ASN ALA ARG LEU ILE GLU SEQRES 31 A 470 ALA LYS ASN ALA GLY LEU GLN VAL ALA ARG ASN ASP GLY SEQRES 32 A 470 ASP GLY SER PHE ASP ARG GLU GLY VAL ALA ALA ALA ILE SEQRES 33 A 470 ARG ALA VAL ALA VAL GLU GLU GLU SER SER LYS VAL PHE SEQRES 34 A 470 GLN ALA LYS ALA LYS LYS LEU GLN GLU ILE VAL ALA ASP SEQRES 35 A 470 MET ALA CYS HIS GLU ARG TYR ILE ASP GLY PHE ILE GLN SEQRES 36 A 470 GLN LEU ARG SER TYR LYS ASP LEU GLU HIS HIS HIS HIS SEQRES 37 A 470 HIS HIS HET 3E6 A 501 67 HET UDP A 504 25 HET MPO A 505 13 HET GOL A 506 6 HET EDO A 507 4 HET EDO A 508 4 HETNAM 3E6 REBAUDIOSIDE A2 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 3E6 C44 H70 O23 FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 MPO C7 H15 N O4 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *482(H2 O) HELIX 1 AA1 ALA A 24 ARG A 41 1 18 HELIX 2 AA2 THR A 50 ARG A 56 1 7 HELIX 3 AA3 ARG A 61 PRO A 66 5 6 HELIX 4 AA4 ARG A 95 GLY A 108 1 14 HELIX 5 AA5 LEU A 109 THR A 119 1 11 HELIX 6 AA6 HIS A 131 HIS A 141 1 11 HELIX 7 AA7 SER A 152 ASP A 161 1 10 HELIX 8 AA8 SER A 203 ARG A 214 1 12 HELIX 9 AA9 THR A 230 LEU A 234 5 5 HELIX 10 AB1 LEU A 251 ARG A 255 5 5 HELIX 11 AB2 ASP A 261 ALA A 269 1 9 HELIX 12 AB3 GLY A 287 GLY A 302 1 16 HELIX 13 AB4 SER A 316 LEU A 320 5 5 HELIX 14 AB5 GLY A 324 ARG A 330 1 7 HELIX 15 AB6 PRO A 341 ALA A 347 1 7 HELIX 16 AB7 GLY A 359 PHE A 369 1 11 HELIX 17 AB8 ASP A 381 LYS A 392 1 12 HELIX 18 AB9 ASP A 408 VAL A 421 1 14 HELIX 19 AC1 GLU A 422 ALA A 441 1 20 HELIX 20 AC2 ASP A 442 SER A 459 1 18 SHEET 1 AA1 8 VAL A 68 ALA A 72 0 SHEET 2 AA1 8 ARG A 44 SER A 49 1 N VAL A 45 O ALA A 69 SHEET 3 AA1 8 HIS A 16 CYS A 20 1 N ILE A 19 O SER A 46 SHEET 4 AA1 8 TRP A 124 VAL A 127 1 O ILE A 126 N VAL A 18 SHEET 5 AA1 8 CYS A 145 MET A 148 1 O MET A 148 N VAL A 127 SHEET 6 AA1 8 LEU A 217 GLY A 220 1 O LEU A 217 N MET A 147 SHEET 7 AA1 8 LYS A 240 PHE A 244 1 O THR A 243 N GLY A 220 SHEET 8 AA1 8 THR A 236 LEU A 237 -1 N LEU A 237 O LYS A 240 SHEET 1 AA2 6 GLY A 333 ALA A 336 0 SHEET 2 AA2 6 ARG A 304 ALA A 308 1 N TRP A 307 O VAL A 334 SHEET 3 AA2 6 VAL A 275 ALA A 279 1 N VAL A 278 O LEU A 306 SHEET 4 AA2 6 VAL A 351 THR A 356 1 O LEU A 355 N TYR A 277 SHEET 5 AA2 6 LEU A 373 MET A 375 1 O ILE A 374 N PHE A 354 SHEET 6 AA2 6 GLY A 395 GLN A 397 1 O LEU A 396 N MET A 375 CRYST1 57.561 83.082 87.946 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011371 0.00000