HEADER LYASE 11-MAY-21 7ESK TITLE CRYSTAL STRUCTURE OF A L-RHAMNOSE-ALPHA-1,4-D-GLUCURONATE LYASE FROM TITLE 2 FUSARIUM OXYSPORUM 12S, LIGAND FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RHAMNOSE-ALPHA-1,4-D-GLUCURONATE LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSARIUM OXYSPORUM; SOURCE 3 ORGANISM_TAXID: 5507; SOURCE 4 STRAIN: 12S; SOURCE 5 GENE: FORHAM1; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZ-ALPHA-A KEYWDS SEVEN-BLADED BETA-PROPELLER, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KONDO,T.ARAKAWA,S.FUSHINOBU,T.SAKAMOTO REVDAT 3 13-NOV-24 7ESK 1 REMARK REVDAT 2 01-SEP-21 7ESK 1 JRNL REVDAT 1 04-AUG-21 7ESK 0 JRNL AUTH T.KONDO,M.KICHIJO,A.MARUTA,M.NAKAYA,S.TAKENAKA,T.ARAKAWA, JRNL AUTH 2 S.FUSHINOBU,T.SAKAMOTO JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF GUM ARABIC JRNL TITL 2 L-RHAMNOSE-ALPHA-1,4-D-GLUCURONATE LYASE ESTABLISHES A NOVEL JRNL TITL 3 POLYSACCHARIDE LYASE FAMILY. JRNL REF J.BIOL.CHEM. V. 297 01001 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34303708 JRNL DOI 10.1016/J.JBC.2021.101001 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 179860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 732 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 597 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3517 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3167 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4793 ; 2.230 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7323 ; 1.100 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 7.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;36.024 ;24.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;10.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4004 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 835 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ESK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300019276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 190044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % (V/V) PEG 1500, 0.1 M BICINE-NAOH REMARK 280 (PH 8.5), 10 % (V/V) 2-PROPANOL, CRYSTAL WAS SOAKED INTO 20 % (V/ REMARK 280 V) GLYCEROL AT 298 K FOR 1 MIN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.05650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.50400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.63350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.50400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.05650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.63350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 LEU A 420 REMARK 465 GLU A 421 REMARK 465 GLN A 422 REMARK 465 LYS A 423 REMARK 465 LEU A 424 REMARK 465 ILE A 425 REMARK 465 SER A 426 REMARK 465 GLU A 427 REMARK 465 GLU A 428 REMARK 465 ASP A 429 REMARK 465 LEU A 430 REMARK 465 ASN A 431 REMARK 465 SER A 432 REMARK 465 ALA A 433 REMARK 465 VAL A 434 REMARK 465 ASP A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 18 CB SER A 18 OG -0.081 REMARK 500 ARG A 59 CZ ARG A 59 NH1 -0.091 REMARK 500 GLU A 70 CB GLU A 70 CG -0.133 REMARK 500 ASP A 129 CB ASP A 129 CG -0.140 REMARK 500 GLU A 137 CD GLU A 137 OE2 0.071 REMARK 500 SER A 183 CB SER A 183 OG -0.119 REMARK 500 TYR A 202 CZ TYR A 202 CE2 -0.110 REMARK 500 TYR A 208 CE1 TYR A 208 CZ -0.079 REMARK 500 ALA A 402 N ALA A 402 CA -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 34 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 210 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 239 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 LYS A 241 CD - CE - NZ ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP A 260 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 260 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 260 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 286 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 337 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 349 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 408 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 141 -162.56 -102.41 REMARK 500 TYR A 150 61.86 73.42 REMARK 500 SER A 172 91.46 -167.79 REMARK 500 GLU A 277 -101.89 -93.74 REMARK 500 ASP A 368 46.94 -91.08 REMARK 500 ASN A 377 60.35 60.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 208 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1193 DISTANCE = 6.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 28 OE2 REMARK 620 2 GLU A 154 OE1 100.9 REMARK 620 3 LEU A 206 O 81.6 71.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 171 O REMARK 620 2 ASP A 198 O 82.8 REMARK 620 3 ASP A 198 OD1 90.1 70.7 REMARK 620 4 GLU A 221 O 95.1 97.9 166.8 REMARK 620 N 1 2 3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AMINO ACID SEQUENCE OF FORHAM1 HAS BEEN REGISTERED IN GENBANK, REMARK 999 DDBJ AND EMBL. ITS ACCESSION NUMBER IS LC617219. DBREF 7ESK A -1 441 PDB 7ESK 7ESK -1 441 SEQRES 1 A 443 GLU PHE LEU THR VAL LYS SER THR LYS GLN TRP THR ILE SEQRES 2 A 443 GLY THR ASP VAL GLN GLY SER GLU ARG LEU ASN GLY VAL SEQRES 3 A 443 SER TYR GLN GLU ASP ALA LEU ILE THR TYR GLY ASP TYR SEQRES 4 A 443 GLN TYR VAL THR PHE TYR GLU THR ALA PRO ALA GLY TYR SEQRES 5 A 443 LEU ASN HIS PHE VAL LYS VAL GLY ARG ARG ARG VAL SER SEQRES 6 A 443 PRO SER VAL GLY ASP TRP GLU PHE LEU THR LEU ASP ASP SEQRES 7 A 443 TYR THR GLN LYS THR MET ASP GLY HIS ASN MET ILE SER SEQRES 8 A 443 MET GLY ILE SER GLY ASP GLY LYS ILE HIS LEU SER PHE SEQRES 9 A 443 ASP HIS HIS ASP VAL PRO ILE ASN TYR ARG ILE SER LYS SEQRES 10 A 443 ASN GLY ILE ALA LYS ASP VAL PRO SER LYS TRP THR SER SEQRES 11 A 443 ASP LEU PHE ASP PRO VAL VAL HIS GLU LEU VAL GLY SER SEQRES 12 A 443 GLN GLY PRO TYR SER PRO LEU THR TYR PRO ARG PHE GLU SEQRES 13 A 443 PRO LEU GLY ASN GLY ASP LEU LEU LEU GLU PHE ARG ILE SEQRES 14 A 443 GLY GLN SER GLY SER GLY ASP SER TYR ILE HIS ARG TYR SEQRES 15 A 443 SER ALA SER THR GLY LYS TRP GLN ALA TYR GLY MET TYR SEQRES 16 A 443 ILE GLN GLY ASP ASP ASN ASN ALA TYR ILE ASN GLY LEU SEQRES 17 A 443 ASP TYR LEU ASP GLY LYS LEU TYR THR SER TRP THR VAL SEQRES 18 A 443 ARG GLU THR PRO ASN ALA ASP THR ASN HIS GLY VAL TYR SEQRES 19 A 443 PHE ALA TYR SER ASN ASP ASP GLY LYS THR TRP PHE ASN SEQRES 20 A 443 THR ASN ASP THR LYS LEU THR LYS PRO ILE SER THR SER SEQRES 21 A 443 ASP ASP SER THR LEU ILE TRP ASP ILE PRO GLN ASN SER SEQRES 22 A 443 ARG MET VAL ASN GLN GLU GLY GLN LEU ILE ASP THR LYS SEQRES 23 A 443 GLY ARG PHE HIS ILE LEU MET ARG ASP LEU LEU SER GLY SEQRES 24 A 443 GLU HIS GLN TYR GLN HIS TYR LEU ARG LYS ALA ASP GLY SEQRES 25 A 443 THR TRP THR LYS ASN ALA ILE ASN PRO ALA GLY LEU ASN SEQRES 26 A 443 GLY PRO ASP LEU TYR ASP PRO ARG GLY LYS LEU ALA GLY SEQRES 27 A 443 ASP ALA SER GLY GLU TYR LEU PHE GLY ILE LEU PRO ASP SEQRES 28 A 443 PRO VAL LYS GLN SER THR GLY ILE TYR VAL ALA THR ALA SEQRES 29 A 443 SER LYS ASP PHE LYS ASP TRP LYS SER LEU ALA GLU ILE SEQRES 30 A 443 PRO ASN THR SER THR GLU PRO LEU PHE ASP LYS THR ARG SEQRES 31 A 443 LEU HIS GLU SER GLY ILE LEU SER VAL PHE VAL ARG GLN SEQRES 32 A 443 ALA GLY GLY PHE PRO ASP ARG LYS LEU GLN VAL TRP ASP SEQRES 33 A 443 PHE GLU LEU ASP LEU LEU GLU GLN LYS LEU ILE SER GLU SEQRES 34 A 443 GLU ASP LEU ASN SER ALA VAL ASP HIS HIS HIS HIS HIS SEQRES 35 A 443 HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET CA A 501 1 HET NA A 502 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *597(H2 O) HELIX 1 AA1 THR A 127 PHE A 131 5 5 HELIX 2 AA2 ASN A 224 ASP A 226 5 3 HELIX 3 AA3 ASP A 259 SER A 261 5 3 HELIX 4 AA4 SER A 363 ASP A 365 5 3 HELIX 5 AA5 ASP A 385 GLY A 393 1 9 SHEET 1 AA1 4 VAL A 3 THR A 13 0 SHEET 2 AA1 4 LYS A 409 LEU A 417 -1 O GLU A 416 N LYS A 4 SHEET 3 AA1 4 ILE A 394 ARG A 400 -1 N LEU A 395 O PHE A 415 SHEET 4 AA1 4 LEU A 383 PHE A 384 -1 N LEU A 383 O PHE A 398 SHEET 1 AA2 4 LEU A 31 TYR A 34 0 SHEET 2 AA2 4 TYR A 37 THR A 45 -1 O TYR A 39 N ILE A 32 SHEET 3 AA2 4 HIS A 53 ARG A 61 -1 O LYS A 56 N PHE A 42 SHEET 4 AA2 4 GLU A 70 GLN A 79 -1 O GLN A 79 N HIS A 53 SHEET 1 AA3 3 ILE A 88 ILE A 92 0 SHEET 2 AA3 3 ILE A 98 PHE A 102 -1 O HIS A 99 N GLY A 91 SHEET 3 AA3 3 TYR A 111 ILE A 113 -1 O ARG A 112 N LEU A 100 SHEET 1 AA4 5 LEU A 148 PRO A 155 0 SHEET 2 AA4 5 LEU A 161 GLN A 169 -1 O LEU A 162 N GLU A 154 SHEET 3 AA4 5 SER A 172 TYR A 180 -1 O TYR A 180 N LEU A 161 SHEET 4 AA4 5 TRP A 187 GLN A 195 -1 O GLN A 188 N ARG A 179 SHEET 5 AA4 5 ILE A 255 SER A 256 1 O ILE A 255 N GLN A 195 SHEET 1 AA5 3 ASN A 200 ILE A 203 0 SHEET 2 AA5 3 LYS A 212 ARG A 220 -1 O THR A 218 N TYR A 202 SHEET 3 AA5 3 ASP A 207 LEU A 209 -1 N ASP A 207 O TYR A 214 SHEET 1 AA6 4 ASN A 200 ILE A 203 0 SHEET 2 AA6 4 LYS A 212 ARG A 220 -1 O THR A 218 N TYR A 202 SHEET 3 AA6 4 ASN A 228 SER A 236 -1 O TYR A 232 N TRP A 217 SHEET 4 AA6 4 LEU A 263 TRP A 265 -1 O ILE A 264 N VAL A 231 SHEET 1 AA7 4 GLY A 278 ILE A 281 0 SHEET 2 AA7 4 PHE A 287 ASP A 293 -1 O LEU A 290 N GLY A 278 SHEET 3 AA7 4 GLN A 300 ARG A 306 -1 O ARG A 306 N PHE A 287 SHEET 4 AA7 4 TRP A 312 ILE A 317 -1 O ASN A 315 N HIS A 303 SHEET 1 AA8 4 LYS A 333 GLY A 336 0 SHEET 2 AA8 4 TYR A 342 ASP A 349 -1 O PHE A 344 N ALA A 335 SHEET 3 AA8 4 SER A 354 THR A 361 -1 O SER A 354 N ASP A 349 SHEET 4 AA8 4 LYS A 370 ILE A 375 -1 O LEU A 372 N ILE A 357 LINK ND2 ASN A 247 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.41 LINK OE2 GLU A 28 CA CA A 501 1555 1555 2.29 LINK OE1 GLU A 154 CA CA A 501 1555 1555 2.38 LINK O GLY A 171 NA NA A 502 1555 1555 2.36 LINK O ASP A 198 NA NA A 502 1555 1555 2.37 LINK OD1AASP A 198 NA NA A 502 1555 1555 2.84 LINK O LEU A 206 CA CA A 501 1555 1555 2.37 LINK O GLU A 221 NA NA A 502 1555 1555 2.24 CISPEP 1 GLU A 28 ASP A 29 0 8.54 CISPEP 2 SER A 63 PRO A 64 0 -6.19 CISPEP 3 GLY A 143 PRO A 144 0 16.36 CISPEP 4 SER A 146 PRO A 147 0 -8.40 CISPEP 5 LYS A 253 PRO A 254 0 -7.79 CISPEP 6 PHE A 405 PRO A 406 0 -1.33 CRYST1 58.113 65.267 107.008 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009345 0.00000