HEADER HYDROLASE 11-MAY-21 7ESQ TITLE STRUCTURE AND MUTATION ANALYSIS OF THE HEXAMERIC P4 FROM PSEUDOMONAS TITLE 2 AERUGINOSA PHAGE PHIYY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PACKAGING NTPASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PHIYY; SOURCE 3 ORGANISM_TAXID: 1852644; SOURCE 4 GENE: PHIYY_SL4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTOVIRUSES, PHIYY P4, NTPASE, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.ZHANG,T.C.JIN REVDAT 2 29-NOV-23 7ESQ 1 REMARK REVDAT 1 23-MAR-22 7ESQ 0 JRNL AUTH C.ZHANG,Y.LI,A.SAMAD,P.ZHENG,Z.JI,F.CHEN,H.ZHANG,T.JIN JRNL TITL STRUCTURE AND MUTATION ANALYSIS OF THE HEXAMERIC P4 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA PHAGE PHIYY. JRNL REF INT.J.BIOL.MACROMOL. V. 194 42 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 34856215 JRNL DOI 10.1016/J.IJBIOMAC.2021.11.129 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 69731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1300 - 5.4000 1.00 2784 147 0.1719 0.1766 REMARK 3 2 5.3900 - 4.2900 1.00 2697 146 0.1586 0.1902 REMARK 3 3 4.2900 - 3.7500 1.00 2669 137 0.1599 0.1762 REMARK 3 4 3.7500 - 3.4100 1.00 2666 139 0.1764 0.1770 REMARK 3 5 3.4000 - 3.1600 1.00 2691 142 0.1913 0.1925 REMARK 3 6 3.1600 - 2.9700 1.00 2650 136 0.1935 0.2388 REMARK 3 7 2.9700 - 2.8300 1.00 2674 139 0.2021 0.2373 REMARK 3 8 2.8200 - 2.7000 1.00 2649 137 0.2061 0.2287 REMARK 3 9 2.7000 - 2.6000 1.00 2668 137 0.2025 0.2134 REMARK 3 10 2.6000 - 2.5100 1.00 2639 138 0.2045 0.2228 REMARK 3 11 2.5100 - 2.4300 1.00 2627 139 0.2040 0.2067 REMARK 3 12 2.4300 - 2.3600 1.00 2679 140 0.2049 0.2414 REMARK 3 13 2.3600 - 2.3000 1.00 2651 142 0.1984 0.2297 REMARK 3 14 2.3000 - 2.2400 1.00 2607 138 0.2007 0.2220 REMARK 3 15 2.2400 - 2.1900 1.00 2668 141 0.2043 0.2475 REMARK 3 16 2.1900 - 2.1400 1.00 2652 142 0.1900 0.2099 REMARK 3 17 2.1400 - 2.1000 1.00 2624 136 0.1979 0.2015 REMARK 3 18 2.1000 - 2.0600 1.00 2636 136 0.2125 0.2490 REMARK 3 19 2.0600 - 2.0300 1.00 2638 142 0.2155 0.2423 REMARK 3 20 2.0200 - 1.9900 1.00 2636 139 0.2138 0.2333 REMARK 3 21 1.9900 - 1.9600 1.00 2643 138 0.2265 0.2697 REMARK 3 22 1.9600 - 1.9300 1.00 2633 140 0.2396 0.2514 REMARK 3 23 1.9300 - 1.9000 1.00 2663 140 0.2766 0.3358 REMARK 3 24 1.9000 - 1.8700 1.00 2635 138 0.2706 0.2817 REMARK 3 25 1.8700 - 1.8500 0.94 2473 130 0.3220 0.3760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ESQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 687024 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4BLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NH4 TARTRATE, 20% PEG2000 MME, REMARK 280 PHOSPHATE PH 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 85.13000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 85.13000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 85.13000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 85.13000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 85.13000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 85.13000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 85.13000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 85.13000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.13000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.13000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 85.13000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.13000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 85.13000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 85.13000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 85.13000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 85.13000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 85.13000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 85.13000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 85.13000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 85.13000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 85.13000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 10 REMARK 465 ASP A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LYS A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 ARG A 20 REMARK 465 THR A 21 REMARK 465 ARG A 22 REMARK 465 LYS A 23 REMARK 465 PRO A 24 REMARK 465 LYS A 25 REMARK 465 ASN A 26 REMARK 465 GLU A 27 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 GLY A 218 REMARK 465 GLU A 219 REMARK 465 GLY A 220 REMARK 465 GLN A 297 REMARK 465 PRO A 298 REMARK 465 LYS A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 VAL A 302 REMARK 465 THR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 VAL A 306 REMARK 465 ILE A 307 REMARK 465 PRO A 308 REMARK 465 ARG A 309 REMARK 465 ALA A 310 REMARK 465 THR A 311 REMARK 465 VAL A 312 REMARK 465 VAL A 313 REMARK 465 PRO A 314 REMARK 465 GLN A 315 REMARK 465 PRO A 316 REMARK 465 SER A 317 REMARK 465 ALA A 318 REMARK 465 VAL A 319 REMARK 465 VAL A 320 REMARK 465 ARG A 321 REMARK 465 ASN A 322 REMARK 465 THR A 323 REMARK 465 ARG A 324 REMARK 465 LEU A 325 REMARK 465 GLU A 326 REMARK 465 SER A 327 REMARK 465 GLN A 328 REMARK 465 THR A 329 REMARK 465 ILE A 330 REMARK 465 ASP A 331 REMARK 465 VAL A 332 REMARK 465 SER A 333 REMARK 465 ASP A 334 REMARK 465 ASP A 335 REMARK 465 ASP A 336 REMARK 465 LEU A 337 REMARK 465 ASN A 338 REMARK 465 ASN A 339 REMARK 465 GLU A 340 REMARK 465 PRO A 341 REMARK 465 GLY A 342 REMARK 465 ARG A 343 REMARK 465 GLN A 344 REMARK 465 GLY A 345 REMARK 465 SER A 346 REMARK 465 ARG A 347 REMARK 465 LYS A 348 REMARK 465 HIS A 349 REMARK 465 ILE A 350 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 9 REMARK 465 LYS B 10 REMARK 465 ASP B 11 REMARK 465 LYS B 12 REMARK 465 GLU B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 LYS B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 ARG B 20 REMARK 465 THR B 21 REMARK 465 ARG B 22 REMARK 465 LYS B 23 REMARK 465 PRO B 24 REMARK 465 LYS B 25 REMARK 465 ASN B 26 REMARK 465 GLU B 219 REMARK 465 TRP B 292 REMARK 465 GLY B 293 REMARK 465 VAL B 294 REMARK 465 GLY B 295 REMARK 465 LYS B 296 REMARK 465 GLN B 297 REMARK 465 PRO B 298 REMARK 465 LYS B 299 REMARK 465 ALA B 300 REMARK 465 ALA B 301 REMARK 465 VAL B 302 REMARK 465 THR B 303 REMARK 465 GLU B 304 REMARK 465 GLU B 305 REMARK 465 VAL B 306 REMARK 465 ILE B 307 REMARK 465 PRO B 308 REMARK 465 ARG B 309 REMARK 465 ALA B 310 REMARK 465 THR B 311 REMARK 465 VAL B 312 REMARK 465 VAL B 313 REMARK 465 PRO B 314 REMARK 465 GLN B 315 REMARK 465 PRO B 316 REMARK 465 SER B 317 REMARK 465 ALA B 318 REMARK 465 VAL B 319 REMARK 465 VAL B 320 REMARK 465 ARG B 321 REMARK 465 ASN B 322 REMARK 465 THR B 323 REMARK 465 ARG B 324 REMARK 465 LEU B 325 REMARK 465 GLU B 326 REMARK 465 SER B 327 REMARK 465 GLN B 328 REMARK 465 THR B 329 REMARK 465 ILE B 330 REMARK 465 ASP B 331 REMARK 465 VAL B 332 REMARK 465 SER B 333 REMARK 465 ASP B 334 REMARK 465 ASP B 335 REMARK 465 ASP B 336 REMARK 465 LEU B 337 REMARK 465 ASN B 338 REMARK 465 ASN B 339 REMARK 465 GLU B 340 REMARK 465 PRO B 341 REMARK 465 GLY B 342 REMARK 465 ARG B 343 REMARK 465 GLN B 344 REMARK 465 GLY B 345 REMARK 465 SER B 346 REMARK 465 ARG B 347 REMARK 465 LYS B 348 REMARK 465 HIS B 349 REMARK 465 ILE B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 617 15455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -158.19 -127.43 REMARK 500 VAL B 32 -39.26 -133.65 REMARK 500 SER B 117 -156.87 -129.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 151 OG REMARK 620 2 PPV A 402 O12 173.3 REMARK 620 3 PPV A 402 O11 94.2 87.6 REMARK 620 4 HOH A 517 O 87.1 91.7 175.1 REMARK 620 5 HOH A 526 O 85.5 87.9 97.1 87.7 REMARK 620 6 HOH A 528 O 90.6 95.8 93.3 82.0 169.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 151 OG REMARK 620 2 PPV B 402 O21 91.5 REMARK 620 3 PPV B 402 O22 168.7 92.3 REMARK 620 4 HOH B 508 O 79.7 97.5 89.3 REMARK 620 5 HOH B 510 O 87.8 173.3 89.6 88.9 REMARK 620 6 HOH B 540 O 93.9 90.6 96.6 169.7 82.8 REMARK 620 N 1 2 3 4 5 DBREF1 7ESQ A 1 350 UNP A0A1U9AK63_9VIRU DBREF2 7ESQ A A0A1U9AK63 1 350 DBREF1 7ESQ B 1 350 UNP A0A1U9AK63_9VIRU DBREF2 7ESQ B A0A1U9AK63 1 350 SEQRES 1 A 350 MET THR ASP ASN LYS ARG PRO GLN LEU LYS ASP LYS GLU SEQRES 2 A 350 PRO ALA ALA LYS PRO ALA ARG THR ARG LYS PRO LYS ASN SEQRES 3 A 350 GLU THR VAL ALA LEU VAL VAL GLU ALA THR THR GLU ALA SEQRES 4 A 350 GLU ALA LYS LYS SER LEU ARG GLU GLY GLY LEU VAL PRO SEQRES 5 A 350 ALA ALA HIS GLU ILE MET ILE PRO VAL GLY ASN MET ILE SEQRES 6 A 350 LEU ALA VAL ASP THR GLN VAL LEU ASP LYS CYS ALA LEU SEQRES 7 A 350 ALA LEU ALA ALA SER ASP ASP PRO GLY ARG TRP PHE ALA SEQRES 8 A 350 GLU ASN GLU SER LEU ILE HIS SER THR VAL PHE ALA PRO SEQRES 9 A 350 VAL ALA LYS GLY LEU HIS ARG VAL TYR PRO LEU LEU SER SEQRES 10 A 350 VAL ARG PRO GLU VAL PRO ALA GLY TYR GLU ALA SER TRP SEQRES 11 A 350 PRO THR GLN ASP HIS MET PRO GLY LEU HIS LEU VAL VAL SEQRES 12 A 350 GLY GLY THR GLY ALA GLY LYS SER SER TYR LEU ALA SER SEQRES 13 A 350 GLN ASP LEU THR LEU VAL ILE ARG TRP GLY GLU PRO ALA SEQRES 14 A 350 GLU ARG PHE ASP VAL GLU GLY ALA THR HIS ALA VAL SER SEQRES 15 A 350 ASP LEU ASN GLU ALA LEU ALA VAL ALA PHE VAL MET ALA SEQRES 16 A 350 ARG ALA GLY TYR ARG PRO ALA ILE ASP SER PHE ARG ASN SEQRES 17 A 350 LEU VAL PHE GLY ILE GLU SER ALA ALA GLY GLU GLY GLY SEQRES 18 A 350 ILE SER THR ALA LEU TYR SER ALA MET THR ALA ILE ASN SEQRES 19 A 350 ASN VAL CYS SER ARG LEU GLY ILE VAL VAL MET VAL VAL SEQRES 20 A 350 VAL ASN PRO MET ALA THR GLU ALA LYS ALA GLU LEU VAL SEQRES 21 A 350 TYR ASN ASN MET ALA ALA SER VAL ALA GLY MET THR VAL SEQRES 22 A 350 LEU MET ASP GLY ALA VAL SER LYS GLN THR VAL ARG THR SEQRES 23 A 350 LEU SER GLY ARG THR TRP GLY VAL GLY LYS GLN PRO LYS SEQRES 24 A 350 ALA ALA VAL THR GLU GLU VAL ILE PRO ARG ALA THR VAL SEQRES 25 A 350 VAL PRO GLN PRO SER ALA VAL VAL ARG ASN THR ARG LEU SEQRES 26 A 350 GLU SER GLN THR ILE ASP VAL SER ASP ASP ASP LEU ASN SEQRES 27 A 350 ASN GLU PRO GLY ARG GLN GLY SER ARG LYS HIS ILE SEQRES 1 B 350 MET THR ASP ASN LYS ARG PRO GLN LEU LYS ASP LYS GLU SEQRES 2 B 350 PRO ALA ALA LYS PRO ALA ARG THR ARG LYS PRO LYS ASN SEQRES 3 B 350 GLU THR VAL ALA LEU VAL VAL GLU ALA THR THR GLU ALA SEQRES 4 B 350 GLU ALA LYS LYS SER LEU ARG GLU GLY GLY LEU VAL PRO SEQRES 5 B 350 ALA ALA HIS GLU ILE MET ILE PRO VAL GLY ASN MET ILE SEQRES 6 B 350 LEU ALA VAL ASP THR GLN VAL LEU ASP LYS CYS ALA LEU SEQRES 7 B 350 ALA LEU ALA ALA SER ASP ASP PRO GLY ARG TRP PHE ALA SEQRES 8 B 350 GLU ASN GLU SER LEU ILE HIS SER THR VAL PHE ALA PRO SEQRES 9 B 350 VAL ALA LYS GLY LEU HIS ARG VAL TYR PRO LEU LEU SER SEQRES 10 B 350 VAL ARG PRO GLU VAL PRO ALA GLY TYR GLU ALA SER TRP SEQRES 11 B 350 PRO THR GLN ASP HIS MET PRO GLY LEU HIS LEU VAL VAL SEQRES 12 B 350 GLY GLY THR GLY ALA GLY LYS SER SER TYR LEU ALA SER SEQRES 13 B 350 GLN ASP LEU THR LEU VAL ILE ARG TRP GLY GLU PRO ALA SEQRES 14 B 350 GLU ARG PHE ASP VAL GLU GLY ALA THR HIS ALA VAL SER SEQRES 15 B 350 ASP LEU ASN GLU ALA LEU ALA VAL ALA PHE VAL MET ALA SEQRES 16 B 350 ARG ALA GLY TYR ARG PRO ALA ILE ASP SER PHE ARG ASN SEQRES 17 B 350 LEU VAL PHE GLY ILE GLU SER ALA ALA GLY GLU GLY GLY SEQRES 18 B 350 ILE SER THR ALA LEU TYR SER ALA MET THR ALA ILE ASN SEQRES 19 B 350 ASN VAL CYS SER ARG LEU GLY ILE VAL VAL MET VAL VAL SEQRES 20 B 350 VAL ASN PRO MET ALA THR GLU ALA LYS ALA GLU LEU VAL SEQRES 21 B 350 TYR ASN ASN MET ALA ALA SER VAL ALA GLY MET THR VAL SEQRES 22 B 350 LEU MET ASP GLY ALA VAL SER LYS GLN THR VAL ARG THR SEQRES 23 B 350 LEU SER GLY ARG THR TRP GLY VAL GLY LYS GLN PRO LYS SEQRES 24 B 350 ALA ALA VAL THR GLU GLU VAL ILE PRO ARG ALA THR VAL SEQRES 25 B 350 VAL PRO GLN PRO SER ALA VAL VAL ARG ASN THR ARG LEU SEQRES 26 B 350 GLU SER GLN THR ILE ASP VAL SER ASP ASP ASP LEU ASN SEQRES 27 B 350 ASN GLU PRO GLY ARG GLN GLY SER ARG LYS HIS ILE HET MG A 401 1 HET PPV A 402 9 HET PEG A 403 7 HET PEG A 404 7 HET MG B 401 1 HET PPV B 402 9 HET PEG B 403 7 HET PEG B 404 7 HETNAM MG MAGNESIUM ION HETNAM PPV PYROPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 MG 2(MG 2+) FORMUL 4 PPV 2(H4 O7 P2) FORMUL 5 PEG 4(C4 H10 O3) FORMUL 11 HOH *254(H2 O) HELIX 1 AA1 THR A 37 LYS A 42 1 6 HELIX 2 AA2 THR A 70 ALA A 82 1 13 HELIX 3 AA3 ASP A 85 GLU A 92 1 8 HELIX 4 AA4 ASN A 93 THR A 100 1 8 HELIX 5 AA5 GLY A 108 TYR A 113 1 6 HELIX 6 AA6 GLY A 149 LEU A 154 1 6 HELIX 7 AA7 ALA A 155 GLN A 157 5 3 HELIX 8 AA8 GLU A 170 VAL A 174 5 5 HELIX 9 AA9 ASP A 183 ALA A 197 1 15 HELIX 10 AB1 PHE A 206 ILE A 213 1 8 HELIX 11 AB2 SER A 223 GLY A 241 1 19 HELIX 12 AB3 LYS A 256 ALA A 266 1 11 HELIX 13 AB4 THR B 37 LYS B 42 1 6 HELIX 14 AB5 THR B 70 SER B 83 1 14 HELIX 15 AB6 ASP B 85 ASN B 93 1 9 HELIX 16 AB7 ASN B 93 SER B 99 1 7 HELIX 17 AB8 GLY B 108 TYR B 113 1 6 HELIX 18 AB9 GLY B 149 ALA B 155 1 7 HELIX 19 AC1 ARG B 171 GLY B 176 1 6 HELIX 20 AC2 ASP B 183 ALA B 197 1 15 HELIX 21 AC3 PHE B 206 ILE B 213 1 8 HELIX 22 AC4 THR B 224 GLY B 241 1 18 HELIX 23 AC5 LYS B 256 ALA B 266 1 11 SHEET 1 AA1 3 GLU A 56 VAL A 61 0 SHEET 2 AA1 3 MET A 64 ASP A 69 -1 O LEU A 66 N ILE A 59 SHEET 3 AA1 3 VAL A 101 PHE A 102 -1 O PHE A 102 N ALA A 67 SHEET 1 AA2 8 THR A 178 ALA A 180 0 SHEET 2 AA2 8 LEU A 161 ARG A 164 1 N VAL A 162 O HIS A 179 SHEET 3 AA2 8 PRO A 201 ASP A 204 1 O ALA A 202 N ILE A 163 SHEET 4 AA2 8 VAL A 243 VAL A 248 1 O VAL A 247 N ILE A 203 SHEET 5 AA2 8 GLY A 138 VAL A 143 1 N VAL A 142 O VAL A 246 SHEET 6 AA2 8 GLY A 270 MET A 275 1 O LEU A 274 N VAL A 143 SHEET 7 AA2 8 ALA A 278 ARG A 285 -1 O LYS A 281 N VAL A 273 SHEET 8 AA2 8 ARG A 290 VAL A 294 -1 O THR A 291 N VAL A 284 SHEET 1 AA3 3 GLU B 56 VAL B 61 0 SHEET 2 AA3 3 MET B 64 ASP B 69 -1 O LEU B 66 N ILE B 59 SHEET 3 AA3 3 VAL B 101 PHE B 102 -1 O PHE B 102 N ALA B 67 SHEET 1 AA4 8 THR B 178 ALA B 180 0 SHEET 2 AA4 8 LEU B 161 ARG B 164 1 N VAL B 162 O HIS B 179 SHEET 3 AA4 8 PRO B 201 ASP B 204 1 O ALA B 202 N ILE B 163 SHEET 4 AA4 8 VAL B 243 VAL B 248 1 O VAL B 247 N ILE B 203 SHEET 5 AA4 8 GLY B 138 VAL B 143 1 N VAL B 142 O VAL B 246 SHEET 6 AA4 8 GLY B 270 MET B 275 1 O THR B 272 N LEU B 141 SHEET 7 AA4 8 ALA B 278 THR B 286 -1 O LYS B 281 N VAL B 273 SHEET 8 AA4 8 GLY B 289 ARG B 290 -1 O GLY B 289 N THR B 286 LINK OG SER A 151 MG MG A 401 1555 1555 2.15 LINK MG MG A 401 O12 PPV A 402 1555 1555 2.08 LINK MG MG A 401 O11 PPV A 402 1555 1555 2.06 LINK MG MG A 401 O HOH A 517 1555 1555 2.14 LINK MG MG A 401 O HOH A 526 1555 1555 2.19 LINK MG MG A 401 O HOH A 528 1555 1555 2.13 LINK OG SER B 151 MG MG B 401 1555 1555 2.22 LINK MG MG B 401 O21 PPV B 402 1555 1555 2.09 LINK MG MG B 401 O22 PPV B 402 1555 1555 2.17 LINK MG MG B 401 O HOH B 508 1555 1555 2.15 LINK MG MG B 401 O HOH B 510 1555 1555 2.15 LINK MG MG B 401 O HOH B 540 1555 1555 2.17 CISPEP 1 TRP A 130 PRO A 131 0 1.42 CISPEP 2 ASP A 204 SER A 205 0 13.59 CISPEP 3 TRP B 130 PRO B 131 0 -2.90 CISPEP 4 ASP B 204 SER B 205 0 15.57 CRYST1 170.260 170.260 170.260 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005873 0.00000