HEADER DNA BINDING PROTEIN/DNA 12-MAY-21 7ET6 TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS TEM1 B3-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR COMPND 3 TEM1; COMPND 4 CHAIN: D, A; COMPND 5 FRAGMENT: B3 DOMAIN; COMPND 6 SYNONYM: PROTEIN TEMPRANILLO 1,RAV1-LIKE ETHYLENE-RESPONSIVE COMPND 7 TRANSCRIPTION FACTOR TEM1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FT-RY14-F; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: FT-RY14-R; COMPND 15 CHAIN: F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TEM1, AT1G25560, F2J7.3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSSETA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 15 ORGANISM_TAXID: 3702; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 19 ORGANISM_TAXID: 3702 KEYWDS GENE REGULATION, FLOWERING TIME REGULATION, PLANT PROTEIN, DNA KEYWDS 2 BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HU,J.DU REVDAT 2 29-NOV-23 7ET6 1 REMARK REVDAT 1 15-SEP-21 7ET6 0 JRNL AUTH H.HU,S.TIAN,G.XIE,R.LIU,N.WANG,S.LI,Y.HE,J.DU JRNL TITL TEM1 COMBINATORIALLY BINDS TO FLOWERING LOCUS T AND RECRUITS JRNL TITL 2 A POLYCOMB FACTOR TO REPRESS THE FLORAL TRANSITION IN JRNL TITL 3 ARABIDOPSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34446554 JRNL DOI 10.1073/PNAS.2103895118 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 10437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.2837 0.99 2798 169 0.2172 0.2471 REMARK 3 2 4.2837 - 3.4009 1.00 2684 131 0.2200 0.2617 REMARK 3 3 3.4009 - 2.9712 0.99 2642 127 0.2579 0.2847 REMARK 3 4 2.9712 - 2.7000 0.69 1795 91 0.3229 0.3799 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 189 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1688 9.6252 -56.2092 REMARK 3 T TENSOR REMARK 3 T11: 1.0470 T22: 1.2283 REMARK 3 T33: 0.5292 T12: -0.0880 REMARK 3 T13: -0.2204 T23: -0.2592 REMARK 3 L TENSOR REMARK 3 L11: 2.3242 L22: 3.9380 REMARK 3 L33: 3.5340 L12: 0.3778 REMARK 3 L13: 0.1032 L23: 2.1984 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: 1.3587 S13: -0.8188 REMARK 3 S21: -1.4601 S22: -0.0615 S23: 0.5209 REMARK 3 S31: 0.7453 S32: -0.8861 S33: -0.0037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 199 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6998 22.2391 -40.5853 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.1974 REMARK 3 T33: 0.3607 T12: 0.0631 REMARK 3 T13: 0.0023 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 5.4594 L22: 5.2538 REMARK 3 L33: 4.4344 L12: 0.1992 REMARK 3 L13: -3.6890 L23: 1.0271 REMARK 3 S TENSOR REMARK 3 S11: 0.2554 S12: 0.0920 S13: 0.5226 REMARK 3 S21: -0.2146 S22: 0.0809 S23: 0.0853 REMARK 3 S31: -0.3721 S32: -0.2256 S33: -0.3752 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 210 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2746 19.1300 -49.4837 REMARK 3 T TENSOR REMARK 3 T11: 0.5861 T22: 0.9504 REMARK 3 T33: 0.5731 T12: 0.1279 REMARK 3 T13: -0.3173 T23: 0.0954 REMARK 3 L TENSOR REMARK 3 L11: 2.9643 L22: 2.1664 REMARK 3 L33: 1.3890 L12: 0.3833 REMARK 3 L13: 2.0269 L23: 0.3498 REMARK 3 S TENSOR REMARK 3 S11: 0.1354 S12: 1.4311 S13: 0.2200 REMARK 3 S21: -1.4075 S22: -0.0993 S23: 1.3254 REMARK 3 S31: -0.0594 S32: -1.1971 S33: -0.0062 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 219 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2696 11.3015 -44.8635 REMARK 3 T TENSOR REMARK 3 T11: 0.6634 T22: 2.1863 REMARK 3 T33: 0.9143 T12: 0.3211 REMARK 3 T13: -0.1760 T23: -0.3507 REMARK 3 L TENSOR REMARK 3 L11: 0.1630 L22: 4.4819 REMARK 3 L33: 1.9884 L12: -0.1947 REMARK 3 L13: 0.1552 L23: -2.3706 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.2873 S13: 0.3252 REMARK 3 S21: -0.2984 S22: 0.3303 S23: 1.0450 REMARK 3 S31: 0.2653 S32: -0.6344 S33: -0.3782 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2114 3.7699 -45.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.5895 T22: 0.5937 REMARK 3 T33: 0.5404 T12: 0.0147 REMARK 3 T13: 0.0247 T23: -0.2492 REMARK 3 L TENSOR REMARK 3 L11: 6.4046 L22: 7.2215 REMARK 3 L33: 8.6023 L12: 3.0018 REMARK 3 L13: 0.1663 L23: -1.6770 REMARK 3 S TENSOR REMARK 3 S11: -0.2483 S12: 0.7088 S13: -1.1745 REMARK 3 S21: -0.8065 S22: -0.0483 S23: -0.3122 REMARK 3 S31: 1.6495 S32: 0.1272 S33: 0.3059 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 251 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1883 11.7013 -39.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.5057 REMARK 3 T33: 0.4292 T12: -0.0971 REMARK 3 T13: -0.0938 T23: -0.1706 REMARK 3 L TENSOR REMARK 3 L11: 7.3377 L22: 2.1569 REMARK 3 L33: 7.0666 L12: 0.1608 REMARK 3 L13: -0.4644 L23: -0.3827 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.0446 S13: -0.1604 REMARK 3 S21: 0.0235 S22: -0.1313 S23: 1.0861 REMARK 3 S31: 0.3391 S32: -0.8654 S33: 0.1161 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 260 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2454 16.4672 -41.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.5447 REMARK 3 T33: 0.1023 T12: 0.0501 REMARK 3 T13: -0.0120 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 5.8596 L22: 6.7051 REMARK 3 L33: 7.6114 L12: 2.4498 REMARK 3 L13: -0.4114 L23: -0.9438 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: 0.1037 S13: 0.3082 REMARK 3 S21: -0.0416 S22: -0.1910 S23: 0.1794 REMARK 3 S31: -0.2202 S32: 0.2492 S33: 0.2371 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 285 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3150 3.9151 -52.9363 REMARK 3 T TENSOR REMARK 3 T11: 0.7764 T22: 1.3726 REMARK 3 T33: 0.6930 T12: -0.0385 REMARK 3 T13: -0.1551 T23: -0.5338 REMARK 3 L TENSOR REMARK 3 L11: 0.4639 L22: 2.6168 REMARK 3 L33: 6.8259 L12: -1.0407 REMARK 3 L13: 0.4273 L23: 0.3807 REMARK 3 S TENSOR REMARK 3 S11: 0.2678 S12: 0.3556 S13: -0.4665 REMARK 3 S21: -0.1428 S22: -0.5046 S23: 0.7741 REMARK 3 S31: 1.4223 S32: -0.8702 S33: 0.1494 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 298 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4515 12.3054 -51.8338 REMARK 3 T TENSOR REMARK 3 T11: 0.4455 T22: 1.3304 REMARK 3 T33: 0.5189 T12: 0.2268 REMARK 3 T13: -0.0863 T23: -0.3847 REMARK 3 L TENSOR REMARK 3 L11: 1.4253 L22: 1.9661 REMARK 3 L33: 8.9469 L12: -1.1410 REMARK 3 L13: -0.1974 L23: 1.4414 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: 0.4330 S13: -0.2363 REMARK 3 S21: -0.3643 S22: -0.0938 S23: -0.1529 REMARK 3 S31: 0.2150 S32: 0.7313 S33: 0.0162 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3700 18.2813 -2.7658 REMARK 3 T TENSOR REMARK 3 T11: 0.6713 T22: 0.4396 REMARK 3 T33: 0.7747 T12: 0.1460 REMARK 3 T13: -0.0199 T23: 0.2045 REMARK 3 L TENSOR REMARK 3 L11: 0.2872 L22: 4.8071 REMARK 3 L33: 4.0688 L12: 0.0717 REMARK 3 L13: -0.0862 L23: 1.0010 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: -0.5117 S13: -0.8755 REMARK 3 S21: 0.6802 S22: 0.0274 S23: -1.1485 REMARK 3 S31: 0.9086 S32: 0.3886 S33: -0.0069 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2479 25.8102 -15.4196 REMARK 3 T TENSOR REMARK 3 T11: 0.6046 T22: 0.2297 REMARK 3 T33: 0.3809 T12: 0.0714 REMARK 3 T13: 0.1866 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 5.4914 L22: 6.4829 REMARK 3 L33: 4.3321 L12: 2.1982 REMARK 3 L13: 0.4291 L23: 4.1642 REMARK 3 S TENSOR REMARK 3 S11: -0.1812 S12: 0.1315 S13: -0.5299 REMARK 3 S21: -1.0227 S22: 0.0591 S23: -0.5075 REMARK 3 S31: 0.1843 S32: 0.2254 S33: 0.1011 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7199 11.4630 -7.2691 REMARK 3 T TENSOR REMARK 3 T11: 0.8043 T22: 0.3197 REMARK 3 T33: 0.8862 T12: 0.1972 REMARK 3 T13: 0.2461 T23: 0.1118 REMARK 3 L TENSOR REMARK 3 L11: 1.7176 L22: 6.9891 REMARK 3 L33: 0.8151 L12: -0.0002 REMARK 3 L13: 0.4541 L23: 1.7924 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.2857 S13: -1.0206 REMARK 3 S21: 0.5434 S22: 0.1065 S23: -0.7646 REMARK 3 S31: 0.8935 S32: 0.2870 S33: -0.0512 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4025 8.1736 -10.2801 REMARK 3 T TENSOR REMARK 3 T11: 1.0704 T22: 0.5606 REMARK 3 T33: 1.2355 T12: 0.1256 REMARK 3 T13: 0.2897 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 5.5126 L22: 5.0125 REMARK 3 L33: 4.8307 L12: -0.4983 REMARK 3 L13: 1.8475 L23: 1.6132 REMARK 3 S TENSOR REMARK 3 S11: -0.2544 S12: 0.3316 S13: -2.1468 REMARK 3 S21: 0.7279 S22: 0.3690 S23: 0.0072 REMARK 3 S31: 1.8391 S32: 0.2863 S33: -0.1009 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9938 22.4312 0.4188 REMARK 3 T TENSOR REMARK 3 T11: 0.8458 T22: 0.5588 REMARK 3 T33: 0.5444 T12: 0.2505 REMARK 3 T13: 0.1146 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 2.2993 L22: 3.5066 REMARK 3 L33: 2.5643 L12: 2.4444 REMARK 3 L13: 1.1149 L23: 1.0671 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: -0.5260 S13: -0.7915 REMARK 3 S21: 1.2164 S22: 0.4570 S23: -0.1901 REMARK 3 S31: 0.3587 S32: 0.0857 S33: -0.2417 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8919 17.4519 -9.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.7400 T22: 0.3593 REMARK 3 T33: 0.5643 T12: 0.0738 REMARK 3 T13: 0.3560 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 5.0573 L22: 7.1350 REMARK 3 L33: 5.4272 L12: -2.9944 REMARK 3 L13: -0.1805 L23: 5.1209 REMARK 3 S TENSOR REMARK 3 S11: -0.0685 S12: 0.3069 S13: -0.8741 REMARK 3 S21: 0.3053 S22: -0.4240 S23: 0.4043 REMARK 3 S31: 0.5482 S32: -0.3027 S33: 0.5375 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5570 14.1149 -15.6134 REMARK 3 T TENSOR REMARK 3 T11: 0.8215 T22: 0.3622 REMARK 3 T33: 0.6347 T12: 0.1736 REMARK 3 T13: 0.3252 T23: -0.0812 REMARK 3 L TENSOR REMARK 3 L11: 3.8324 L22: 3.5401 REMARK 3 L33: 4.2944 L12: -1.1173 REMARK 3 L13: 0.9938 L23: 3.0749 REMARK 3 S TENSOR REMARK 3 S11: 0.1887 S12: 0.7673 S13: -0.9495 REMARK 3 S21: -0.1165 S22: -0.2688 S23: -0.0244 REMARK 3 S31: 0.4287 S32: 0.2172 S33: 0.0306 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5685 29.7060 -7.7661 REMARK 3 T TENSOR REMARK 3 T11: 0.4553 T22: 0.2556 REMARK 3 T33: 0.3972 T12: 0.0678 REMARK 3 T13: 0.1209 T23: 0.0878 REMARK 3 L TENSOR REMARK 3 L11: 4.2950 L22: 9.8122 REMARK 3 L33: 7.1096 L12: 4.5015 REMARK 3 L13: -0.9694 L23: 0.4834 REMARK 3 S TENSOR REMARK 3 S11: -0.2958 S12: -0.1204 S13: 0.3651 REMARK 3 S21: 0.6654 S22: 0.3489 S23: 0.9893 REMARK 3 S31: -0.1575 S32: -0.4773 S33: -0.0775 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5657 24.9172 -2.8571 REMARK 3 T TENSOR REMARK 3 T11: 0.7177 T22: 0.3502 REMARK 3 T33: 0.5099 T12: 0.2719 REMARK 3 T13: -0.0122 T23: 0.1170 REMARK 3 L TENSOR REMARK 3 L11: 5.0986 L22: 7.9146 REMARK 3 L33: 4.4721 L12: 5.2622 REMARK 3 L13: -1.1927 L23: -2.8843 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.7728 S13: -1.0217 REMARK 3 S21: 1.0329 S22: -0.2563 S23: -0.6650 REMARK 3 S31: 0.1962 S32: 0.2743 S33: 0.2422 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0958 20.4673 4.0263 REMARK 3 T TENSOR REMARK 3 T11: 1.5220 T22: 0.8205 REMARK 3 T33: 0.6236 T12: 0.3956 REMARK 3 T13: -0.0585 T23: 0.2787 REMARK 3 L TENSOR REMARK 3 L11: 3.9862 L22: 3.5173 REMARK 3 L33: 4.6363 L12: 0.8926 REMARK 3 L13: 0.8889 L23: -2.6330 REMARK 3 S TENSOR REMARK 3 S11: 0.2796 S12: -1.2277 S13: -1.1433 REMARK 3 S21: 0.8283 S22: -0.2485 S23: -0.2129 REMARK 3 S31: 0.1427 S32: 0.0817 S33: 0.0180 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6784 19.9316 -22.7165 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.4098 REMARK 3 T33: 0.7745 T12: 0.2415 REMARK 3 T13: -0.0126 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 4.2818 L22: 2.6499 REMARK 3 L33: 1.9754 L12: -1.9076 REMARK 3 L13: -0.7331 L23: 0.6686 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.5560 S13: -0.2323 REMARK 3 S21: 0.5888 S22: -0.1087 S23: 0.2075 REMARK 3 S31: 0.0213 S32: 0.1409 S33: 0.1442 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9705 16.6408 -23.3304 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.4838 REMARK 3 T33: 0.9107 T12: 0.6125 REMARK 3 T13: 0.0250 T23: -0.3172 REMARK 3 L TENSOR REMARK 3 L11: 0.2097 L22: 0.2220 REMARK 3 L33: 0.3668 L12: -0.0124 REMARK 3 L13: -0.2522 L23: 0.1241 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: 0.0214 S13: -0.2782 REMARK 3 S21: 0.1026 S22: -0.0715 S23: 0.0048 REMARK 3 S31: 0.2276 S32: 0.0470 S33: 0.0899 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ET6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300020562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.98800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4LDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MGAC, 0.1 M MES PH 6.5, 10% PEG REMARK 280 10000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.49350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.24025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.74675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.49350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.74675 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.24025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 185 REMARK 465 ALA D 186 REMARK 465 VAL D 187 REMARK 465 LEU D 188 REMARK 465 THR D 228 REMARK 465 ALA D 229 REMARK 465 MET D 230 REMARK 465 GLY D 231 REMARK 465 MET D 232 REMARK 465 ASN D 233 REMARK 465 PRO D 234 REMARK 465 SER D 235 REMARK 465 PRO D 236 REMARK 465 THR D 237 REMARK 465 PRO D 308 REMARK 465 VAL D 309 REMARK 465 SER A 185 REMARK 465 ALA A 186 REMARK 465 VAL A 187 REMARK 465 LEU A 188 REMARK 465 ARG A 189 REMARK 465 ALA A 190 REMARK 465 ARG A 191 REMARK 465 GLU A 192 REMARK 465 VAL A 193 REMARK 465 MET A 226 REMARK 465 THR A 227 REMARK 465 THR A 228 REMARK 465 ALA A 229 REMARK 465 MET A 230 REMARK 465 GLY A 231 REMARK 465 MET A 232 REMARK 465 ASN A 233 REMARK 465 PRO A 234 REMARK 465 SER A 235 REMARK 465 PRO A 236 REMARK 465 SER A 307 REMARK 465 PRO A 308 REMARK 465 VAL A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR D 292 45.94 -93.07 REMARK 500 THR A 268 -84.11 -119.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ET6 D 186 309 UNP Q9C6M5 RAVL1_ARATH 186 309 DBREF 7ET6 A 186 309 UNP Q9C6M5 RAVL1_ARATH 186 309 DBREF 7ET6 E 1 15 PDB 7ET6 7ET6 1 15 DBREF 7ET6 F 1 15 PDB 7ET6 7ET6 1 15 SEQADV 7ET6 SER D 185 UNP Q9C6M5 EXPRESSION TAG SEQADV 7ET6 SER A 185 UNP Q9C6M5 EXPRESSION TAG SEQRES 1 D 125 SER ALA VAL LEU ARG ALA ARG GLU VAL LEU PHE GLU LYS SEQRES 2 D 125 THR VAL THR PRO SER ASP VAL GLY LYS LEU ASN ARG LEU SEQRES 3 D 125 VAL ILE PRO LYS GLN HIS ALA GLU LYS HIS PHE PRO LEU SEQRES 4 D 125 PRO ALA MET THR THR ALA MET GLY MET ASN PRO SER PRO SEQRES 5 D 125 THR LYS GLY VAL LEU ILE ASN LEU GLU ASP ARG THR GLY SEQRES 6 D 125 LYS VAL TRP ARG PHE ARG TYR SER TYR TRP ASN SER SER SEQRES 7 D 125 GLN SER TYR VAL LEU THR LYS GLY TRP SER ARG PHE VAL SEQRES 8 D 125 LYS GLU LYS ASN LEU ARG ALA GLY ASP VAL VAL CYS PHE SEQRES 9 D 125 GLU ARG SER THR GLY PRO ASP ARG GLN LEU TYR ILE HIS SEQRES 10 D 125 TRP LYS VAL ARG SER SER PRO VAL SEQRES 1 A 125 SER ALA VAL LEU ARG ALA ARG GLU VAL LEU PHE GLU LYS SEQRES 2 A 125 THR VAL THR PRO SER ASP VAL GLY LYS LEU ASN ARG LEU SEQRES 3 A 125 VAL ILE PRO LYS GLN HIS ALA GLU LYS HIS PHE PRO LEU SEQRES 4 A 125 PRO ALA MET THR THR ALA MET GLY MET ASN PRO SER PRO SEQRES 5 A 125 THR LYS GLY VAL LEU ILE ASN LEU GLU ASP ARG THR GLY SEQRES 6 A 125 LYS VAL TRP ARG PHE ARG TYR SER TYR TRP ASN SER SER SEQRES 7 A 125 GLN SER TYR VAL LEU THR LYS GLY TRP SER ARG PHE VAL SEQRES 8 A 125 LYS GLU LYS ASN LEU ARG ALA GLY ASP VAL VAL CYS PHE SEQRES 9 A 125 GLU ARG SER THR GLY PRO ASP ARG GLN LEU TYR ILE HIS SEQRES 10 A 125 TRP LYS VAL ARG SER SER PRO VAL SEQRES 1 E 15 DG DA DA DA DC DC DA DC DC DT DG DT DT SEQRES 2 E 15 DT DG SEQRES 1 F 15 DC DC DA DA DA DC DA DG DG DT DG DG DT SEQRES 2 F 15 DT DT FORMUL 5 HOH *23(H2 O) HELIX 1 AA1 PRO D 213 PHE D 221 1 9 HELIX 2 AA2 GLY D 270 ASN D 279 1 10 HELIX 3 AA3 PRO A 201 GLY A 205 5 5 HELIX 4 AA4 PRO A 213 PHE A 221 1 9 HELIX 5 AA5 GLY A 270 ASN A 279 1 10 SHEET 1 AA1 7 ARG D 191 THR D 198 0 SHEET 2 AA1 7 VAL D 285 SER D 291 -1 O ARG D 290 N GLU D 192 SHEET 3 AA1 7 LEU D 298 LYS D 303 -1 O TYR D 299 N GLU D 289 SHEET 4 AA1 7 VAL D 240 GLU D 245 1 N GLU D 245 O ILE D 300 SHEET 5 AA1 7 VAL D 251 TRP D 259 -1 O TRP D 252 N LEU D 244 SHEET 6 AA1 7 SER D 264 LEU D 267 -1 O SER D 264 N TRP D 259 SHEET 7 AA1 7 LEU D 210 ILE D 212 -1 N ILE D 212 O TYR D 265 SHEET 1 AA2 3 PHE A 195 THR A 198 0 SHEET 2 AA2 3 ASP A 284 ARG A 290 -1 O PHE A 288 N PHE A 195 SHEET 3 AA2 3 LEU A 298 VAL A 304 -1 O HIS A 301 N CYS A 287 SHEET 1 AA3 4 LEU A 210 ILE A 212 0 SHEET 2 AA3 4 SER A 264 LEU A 267 -1 O TYR A 265 N ILE A 212 SHEET 3 AA3 4 VAL A 251 TRP A 259 -1 N TRP A 259 O SER A 264 SHEET 4 AA3 4 VAL A 240 GLU A 245 -1 N ILE A 242 O PHE A 254 CRYST1 68.760 68.760 162.987 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006135 0.00000